Wall clock time and date at job start Tue Mar 31 2020 19:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.43356 * 2 1 4 4 C 1.54882 * 110.48563 * 122.54396 * 2 1 3 5 5 C 1.54895 * 102.74693 * 156.75219 * 4 2 1 6 6 C 1.54264 * 104.19437 * 322.05593 * 5 4 2 7 7 H 1.09001 * 110.02657 * 264.27994 * 6 5 4 8 8 C 1.52997 * 110.03229 * 142.89708 * 6 5 4 9 9 N 1.46505 * 109.47212 * 67.08881 * 8 6 5 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 6 11 11 O 1.21361 * 120.00677 * 0.02562 * 10 9 8 12 12 C 1.49342 * 119.99710 * 180.02562 * 10 9 8 13 13 O 1.21388 * 120.00217 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00203 * 180.02562 * 12 10 9 15 15 C 1.39935 * 120.00311 * 179.97438 * 14 12 10 16 16 C 1.40464 * 125.97766 * 0.02562 * 15 14 12 17 17 C 1.35216 * 107.86661 * 179.97438 * 16 15 14 18 18 N 1.34990 * 107.87486 * 0.02562 * 17 16 15 19 19 C 1.46502 * 125.96996 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.46909 * 124.99825 * 19 18 17 21 21 H 1.07994 * 120.00562 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99887 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99852 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99979 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46887 * 60.00871 * 24 22 20 26 26 H 1.48502 * 109.47012 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47640 * 300.00500 * 24 22 20 28 28 N 1.31266 * 125.98437 * 179.68931 * 15 14 12 29 29 C 1.53874 * 106.63981 * 23.58288 * 6 5 4 30 30 H 1.09004 * 109.46445 * 298.91297 * 1 2 3 31 31 H 1.08991 * 109.47153 * 58.90923 * 1 2 3 32 32 H 1.09001 * 109.47259 * 178.91759 * 1 2 3 33 33 H 1.08995 * 110.76278 * 38.43501 * 4 2 1 34 34 H 1.09006 * 110.75483 * 275.06212 * 4 2 1 35 35 H 1.09002 * 110.48327 * 203.37105 * 5 4 2 36 36 H 1.08998 * 110.59736 * 80.79257 * 5 4 2 37 37 H 1.09002 * 109.47153 * 307.08873 * 8 6 5 38 38 H 1.09001 * 109.46832 * 187.09064 * 8 6 5 39 39 H 0.96996 * 119.99606 * 0.02562 * 9 8 6 40 40 H 0.96996 * 120.00278 * 0.02562 * 14 12 10 41 41 H 1.07999 * 126.06603 * 0.02562 * 16 15 14 42 42 H 1.07996 * 126.06017 * 180.02562 * 17 16 15 43 43 H 1.08994 * 109.46904 * 244.99700 * 19 18 17 44 44 H 1.08993 * 109.46936 * 4.99865 * 19 18 17 45 45 H 0.96994 * 119.99989 * 179.97438 * 23 22 20 46 46 H 1.09007 * 110.02609 * 119.30979 * 29 6 5 47 47 H 1.08996 * 110.03185 * 240.73978 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4920 -1.1941 0.7626 6 6 3.3202 -1.5375 -0.7314 7 1 3.1757 -2.6110 -0.8534 8 6 4.5502 -1.0817 -1.5189 9 7 5.7102 -1.8824 -1.1193 10 6 6.9121 -1.6566 -1.6856 11 8 7.0337 -0.7897 -2.5262 12 6 8.0945 -2.4732 -1.2788 13 8 7.9728 -3.3406 -0.4384 14 7 9.2966 -2.2471 -1.8447 15 6 10.4046 -3.0119 -1.4631 16 6 10.4068 -4.0421 -0.5083 17 6 11.6650 -4.5307 -0.4281 18 7 12.4340 -3.8396 -1.2961 19 6 13.8655 -4.0454 -1.5300 20 6 14.1045 -4.2901 -2.9976 21 1 13.2734 -4.2918 -3.6872 22 6 15.3846 -4.5109 -3.4602 23 7 16.3968 -4.5083 -2.6205 24 14 15.6808 -4.8150 -5.2793 25 1 15.2150 -3.6406 -6.0597 26 1 17.1319 -5.0234 -5.5164 27 1 14.9311 -6.0231 -5.7078 28 7 11.6224 -2.8963 -1.9391 29 6 2.0724 -0.7793 -1.2172 30 1 -0.3632 0.4969 0.8996 31 1 -0.3633 0.5306 -0.8800 32 1 -0.3634 -1.0275 -0.0194 33 1 1.4595 -1.6596 1.4229 34 1 2.1230 -0.1362 2.1008 35 1 3.8339 -2.0674 1.3181 36 1 4.1912 -0.3670 0.8860 37 1 4.7457 -0.0298 -1.3105 38 1 4.3680 -1.2131 -2.5855 39 1 5.6129 -2.5755 -0.4478 40 1 9.3939 -1.5538 -2.5160 41 1 9.5545 -4.3840 0.0602 42 1 11.9961 -5.3318 0.2161 43 1 14.4161 -3.1590 -1.2151 44 1 14.2069 -4.9077 -0.9575 45 1 17.2972 -4.6640 -2.9458 46 1 2.3433 -0.0865 -2.0140 47 1 1.3223 -1.4848 -1.5742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362209084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:52 Heat of formation + Delta-G solvation = -6.876312 kcal Electronic energy + Delta-G solvation = -27354.574143 eV Core-core repulsion = 23345.540891 eV Total energy + Delta-G solvation = -4009.033251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10081 -40.27803 -39.26786 -38.34358 -35.62013 -34.66726 -33.36525 -31.88467 -31.04497 -29.83521 -29.42179 -27.41250 -26.64109 -25.10724 -23.92711 -22.76720 -21.32125 -20.82065 -20.53452 -20.02895 -19.54793 -18.29005 -17.10120 -16.62213 -16.45826 -16.28273 -16.20985 -15.60359 -15.22102 -15.04583 -14.69644 -14.37140 -14.08913 -14.04854 -13.94352 -13.52356 -13.42266 -12.98813 -12.95612 -12.41910 -12.33111 -12.28365 -11.90744 -11.71533 -11.52214 -11.34911 -11.28094 -11.12521 -11.06883 -11.01667 -10.88820 -10.85876 -10.55516 -10.27420 -10.04093 -9.58714 -9.55231 -9.53067 -8.64497 -8.23707 -7.58767 -6.26012 -4.31317 1.19737 2.05353 2.65756 3.02665 3.18906 3.25724 3.28932 3.34159 3.65891 3.83803 4.01541 4.10885 4.18283 4.30430 4.40248 4.58860 4.75593 4.91078 4.99181 5.03879 5.09310 5.13221 5.15115 5.25577 5.35022 5.37608 5.42152 5.50659 5.55837 5.60890 5.70649 5.71218 5.75183 5.86571 5.95165 5.98903 6.09795 6.31085 6.40530 6.78665 6.88875 7.01718 7.23820 7.35663 7.61556 7.68689 7.84523 7.94811 7.97239 8.53569 8.77023 9.34558 10.82765 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.032948 B = 0.001712 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.614446 B =16348.272163 C =16917.587127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.106 4.106 7 H 0.082 0.918 8 C 0.124 3.876 9 N -0.699 5.699 10 C 0.515 3.485 11 O -0.516 6.516 12 C 0.512 3.488 13 O -0.500 6.500 14 N -0.598 5.598 15 C 0.250 3.750 16 C -0.286 4.286 17 C 0.053 3.947 18 N -0.314 5.314 19 C 0.257 3.743 20 C -0.532 4.532 21 H 0.069 0.931 22 C 0.063 3.937 23 N -0.895 5.895 24 Si 0.909 3.091 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 N -0.294 5.294 29 C -0.113 4.113 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.414 0.586 40 H 0.423 0.577 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.268 0.732 46 H 0.069 0.931 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.595 6.317 7.538 31.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.125 4.125 7 H 0.100 0.900 8 C 0.001 3.999 9 N -0.353 5.353 10 C 0.295 3.705 11 O -0.391 6.391 12 C 0.292 3.708 13 O -0.374 6.374 14 N -0.246 5.246 15 C -0.003 4.003 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.096 5.096 19 C 0.140 3.860 20 C -0.570 4.570 21 H 0.087 0.913 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.736 3.264 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 N -0.126 5.126 29 C -0.151 4.151 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.250 0.750 40 H 0.261 0.739 41 H 0.178 0.822 42 H 0.188 0.812 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.512 6.920 6.702 30.095 hybrid contribution -0.109 -0.615 -0.466 0.780 sum -28.621 6.305 6.236 29.963 Atomic orbital electron populations 1.21807 0.94955 1.01820 1.01665 1.22006 0.95518 0.99416 0.94794 0.90694 1.22566 0.95881 0.99860 0.97467 1.22502 0.97509 1.01725 0.94508 1.22052 0.93927 1.01054 0.95438 0.89967 1.21691 0.83335 0.95465 0.99404 1.45712 1.07747 1.38885 1.42985 1.19886 0.84250 0.84026 0.82323 1.90796 1.84758 1.32281 1.31267 1.19932 0.83664 0.84566 0.82643 1.90706 1.84151 1.31659 1.30841 1.42001 1.05346 1.36145 1.41157 1.19018 0.87402 0.95504 0.98334 1.21514 0.98491 1.03547 1.08141 1.22582 0.91323 0.99056 0.96703 1.49173 1.10170 1.23528 1.26757 1.19792 0.68733 0.98478 0.98981 1.21217 0.93796 1.50084 0.91888 0.91290 1.24938 0.95481 0.94697 0.98853 1.69905 0.99674 1.48797 1.34914 0.86373 0.77037 0.79038 0.83983 1.19889 1.21018 1.20036 1.77407 0.99437 1.14858 1.20865 1.22223 0.96001 0.98935 0.97925 0.92688 0.92692 0.92600 0.91326 0.91529 0.91243 0.91084 0.90672 0.90798 0.74960 0.73948 0.82165 0.81233 0.93548 0.92374 0.92232 0.91234 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.13 37.16 0.34 -0.27 16 2 C -0.10 -0.47 3.46 -88.91 -0.31 -0.77 16 3 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 4 C -0.12 -0.58 6.33 -24.74 -0.16 -0.74 16 5 C -0.12 -0.66 6.05 -25.07 -0.15 -0.81 16 6 C -0.11 -0.56 2.97 -89.50 -0.27 -0.82 16 7 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 8 C 0.12 0.89 4.73 -4.04 -0.02 0.87 16 9 N -0.70 -6.29 5.39 -60.76 -0.33 -6.62 16 10 C 0.52 6.37 7.89 -11.64 -0.09 6.28 16 11 O -0.52 -7.46 16.48 5.49 0.09 -7.37 16 12 C 0.51 7.47 7.85 -11.64 -0.09 7.38 16 13 O -0.50 -7.81 13.60 5.46 0.07 -7.74 16 14 N -0.60 -9.82 5.43 -11.58 -0.06 -9.89 16 15 C 0.25 5.00 8.10 -154.55 -1.25 3.75 16 16 C -0.29 -5.44 9.60 -39.82 -0.38 -5.82 16 17 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 18 N -0.31 -7.19 3.67 -62.57 -0.23 -7.42 16 19 C 0.26 6.46 6.26 -5.19 -0.03 6.43 16 20 C -0.53 -14.72 9.23 -34.44 -0.32 -15.04 16 21 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 24 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 28 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 29 C -0.11 -0.54 6.04 -25.56 -0.15 -0.69 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.23 8.11 -51.93 -0.42 -0.19 16 33 H 0.07 0.32 8.06 -51.93 -0.42 -0.10 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.43 7.77 -51.93 -0.40 0.02 16 37 H 0.08 0.58 8.02 -51.93 -0.42 0.16 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.41 3.24 7.80 -40.82 -0.32 2.92 16 40 H 0.42 6.40 8.29 -40.82 -0.34 6.06 16 41 H 0.16 2.85 5.91 -52.49 -0.31 2.54 16 42 H 0.17 2.62 8.06 -52.49 -0.42 2.19 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 45 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.07 0.33 7.67 -51.93 -0.40 -0.07 16 47 H 0.07 0.31 7.82 -51.93 -0.41 -0.09 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -31.60 392.50 -8.81 -40.41 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.20 Total: 4.96 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -3.18 Total: 2.22 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.51 Total: -54.74 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.16 Total: -15.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.60 -8.81 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362209084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.536 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds