Wall clock time and date at job start Tue Mar 31 2020 19:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.43356 * 2 1 4 4 C 1.54882 * 110.48563 * 122.54396 * 2 1 3 5 5 C 1.54895 * 102.74693 * 156.75219 * 4 2 1 6 6 C 1.54264 * 104.19437 * 322.05593 * 5 4 2 7 7 H 1.09001 * 110.02657 * 264.27994 * 6 5 4 8 8 C 1.52997 * 110.03229 * 142.89708 * 6 5 4 9 9 N 1.46505 * 109.47212 * 67.08881 * 8 6 5 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 6 11 11 O 1.21361 * 120.00677 * 0.02562 * 10 9 8 12 12 C 1.49342 * 119.99710 * 180.02562 * 10 9 8 13 13 O 1.21388 * 120.00217 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00203 * 180.02562 * 12 10 9 15 15 C 1.39935 * 120.00311 * 179.97438 * 14 12 10 16 16 C 1.40464 * 125.97766 * 0.02562 * 15 14 12 17 17 C 1.35216 * 107.86661 * 179.97438 * 16 15 14 18 18 N 1.34990 * 107.87486 * 0.02562 * 17 16 15 19 19 C 1.46502 * 125.96996 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.46909 * 124.99825 * 19 18 17 21 21 H 1.07994 * 120.00562 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99887 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99852 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99979 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46887 * 60.00871 * 24 22 20 26 26 H 1.48502 * 109.47012 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47640 * 300.00500 * 24 22 20 28 28 N 1.31266 * 125.98437 * 179.68931 * 15 14 12 29 29 C 1.53874 * 106.63981 * 23.58288 * 6 5 4 30 30 H 1.09004 * 109.46445 * 298.91297 * 1 2 3 31 31 H 1.08991 * 109.47153 * 58.90923 * 1 2 3 32 32 H 1.09001 * 109.47259 * 178.91759 * 1 2 3 33 33 H 1.08995 * 110.76278 * 38.43501 * 4 2 1 34 34 H 1.09006 * 110.75483 * 275.06212 * 4 2 1 35 35 H 1.09002 * 110.48327 * 203.37105 * 5 4 2 36 36 H 1.08998 * 110.59736 * 80.79257 * 5 4 2 37 37 H 1.09002 * 109.47153 * 307.08873 * 8 6 5 38 38 H 1.09001 * 109.46832 * 187.09064 * 8 6 5 39 39 H 0.96996 * 119.99606 * 0.02562 * 9 8 6 40 40 H 0.96996 * 120.00278 * 0.02562 * 14 12 10 41 41 H 1.07999 * 126.06603 * 0.02562 * 16 15 14 42 42 H 1.07996 * 126.06017 * 180.02562 * 17 16 15 43 43 H 1.08994 * 109.46904 * 244.99700 * 19 18 17 44 44 H 1.08993 * 109.46936 * 4.99865 * 19 18 17 45 45 H 0.96994 * 119.99989 * 179.97438 * 23 22 20 46 46 H 1.09007 * 110.02609 * 119.30979 * 29 6 5 47 47 H 1.08996 * 110.03185 * 240.73978 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4920 -1.1941 0.7626 6 6 3.3202 -1.5375 -0.7314 7 1 3.1757 -2.6110 -0.8534 8 6 4.5502 -1.0817 -1.5189 9 7 5.7102 -1.8824 -1.1193 10 6 6.9121 -1.6566 -1.6856 11 8 7.0337 -0.7897 -2.5262 12 6 8.0945 -2.4732 -1.2788 13 8 7.9728 -3.3406 -0.4384 14 7 9.2966 -2.2471 -1.8447 15 6 10.4046 -3.0119 -1.4631 16 6 10.4068 -4.0421 -0.5083 17 6 11.6650 -4.5307 -0.4281 18 7 12.4340 -3.8396 -1.2961 19 6 13.8655 -4.0454 -1.5300 20 6 14.1045 -4.2901 -2.9976 21 1 13.2734 -4.2918 -3.6872 22 6 15.3846 -4.5109 -3.4602 23 7 16.3968 -4.5083 -2.6205 24 14 15.6808 -4.8150 -5.2793 25 1 15.2150 -3.6406 -6.0597 26 1 17.1319 -5.0234 -5.5164 27 1 14.9311 -6.0231 -5.7078 28 7 11.6224 -2.8963 -1.9391 29 6 2.0724 -0.7793 -1.2172 30 1 -0.3632 0.4969 0.8996 31 1 -0.3633 0.5306 -0.8800 32 1 -0.3634 -1.0275 -0.0194 33 1 1.4595 -1.6596 1.4229 34 1 2.1230 -0.1362 2.1008 35 1 3.8339 -2.0674 1.3181 36 1 4.1912 -0.3670 0.8860 37 1 4.7457 -0.0298 -1.3105 38 1 4.3680 -1.2131 -2.5855 39 1 5.6129 -2.5755 -0.4478 40 1 9.3939 -1.5538 -2.5160 41 1 9.5545 -4.3840 0.0602 42 1 11.9961 -5.3318 0.2161 43 1 14.4161 -3.1590 -1.2151 44 1 14.2069 -4.9077 -0.9575 45 1 17.2972 -4.6640 -2.9458 46 1 2.3433 -0.0865 -2.0140 47 1 1.3223 -1.4848 -1.5742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362209084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:51 Heat of formation + Delta-G solvation = -26.558335 kcal Electronic energy + Delta-G solvation = -27355.427619 eV Core-core repulsion = 23345.540891 eV Total energy + Delta-G solvation = -4009.886728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.44974 -41.54369 -40.02310 -39.28371 -36.72418 -35.84853 -35.23291 -32.83597 -32.42052 -31.02235 -30.29091 -28.88519 -27.70699 -26.04911 -24.91055 -24.25095 -22.62798 -21.84575 -21.29515 -21.09298 -20.39812 -19.35967 -18.70686 -18.28644 -17.77896 -17.28483 -17.04241 -16.89185 -16.33140 -16.08533 -15.96341 -15.69787 -15.22605 -15.07903 -14.57770 -14.48800 -14.34591 -14.19821 -13.87416 -13.79507 -13.71937 -13.53166 -13.03579 -12.81493 -12.71729 -12.64567 -12.30480 -12.14957 -12.05030 -11.81443 -11.70472 -11.63672 -11.52246 -11.43983 -11.40062 -11.27675 -10.78466 -10.72088 -10.34463 -9.83741 -9.21855 -8.33828 -6.47471 0.04774 0.86900 1.13856 1.38437 1.40308 1.48962 1.74449 1.85159 2.26066 2.34136 2.60593 2.98600 3.24934 3.58375 3.66674 3.77695 3.91265 4.18007 4.22363 4.29401 4.45855 4.59532 4.63386 4.64057 4.70814 4.74967 4.78251 4.83918 4.88324 4.90044 4.95128 4.98661 5.02799 5.09702 5.12311 5.18504 5.22102 5.36861 5.38943 5.51985 5.55768 5.60567 5.74546 5.78505 5.85724 6.15877 6.25451 6.56228 6.63678 6.78997 6.96532 7.22460 8.73830 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.032948 B = 0.001712 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.614446 B =16348.272163 C =16917.587127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.098 4.098 7 H 0.090 0.910 8 C 0.123 3.877 9 N -0.679 5.679 10 C 0.522 3.478 11 O -0.538 6.538 12 C 0.517 3.483 13 O -0.507 6.507 14 N -0.601 5.601 15 C 0.258 3.742 16 C -0.287 4.287 17 C 0.061 3.939 18 N -0.339 5.339 19 C 0.271 3.729 20 C -0.551 4.551 21 H 0.052 0.948 22 C 0.021 3.979 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.276 1.276 26 H -0.272 1.272 27 H -0.269 1.269 28 N -0.342 5.342 29 C -0.112 4.112 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.422 0.578 40 H 0.428 0.572 41 H 0.177 0.823 42 H 0.207 0.793 43 H 0.023 0.977 44 H 0.063 0.937 45 H 0.273 0.727 46 H 0.069 0.931 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.454 5.672 7.653 32.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.156 4.156 5 C -0.164 4.164 6 C -0.117 4.117 7 H 0.108 0.892 8 C 0.001 3.999 9 N -0.332 5.332 10 C 0.302 3.698 11 O -0.416 6.416 12 C 0.298 3.702 13 O -0.380 6.380 14 N -0.251 5.251 15 C 0.004 3.996 16 C -0.318 4.318 17 C -0.088 4.088 18 N -0.121 5.121 19 C 0.153 3.847 20 C -0.589 4.589 21 H 0.070 0.930 22 C -0.180 4.180 23 N -0.557 5.557 24 Si 0.794 3.206 25 H -0.201 1.201 26 H -0.197 1.197 27 H -0.194 1.194 28 N -0.173 5.173 29 C -0.150 4.150 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.260 0.740 40 H 0.266 0.734 41 H 0.194 0.806 42 H 0.224 0.776 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -30.428 6.267 6.852 31.813 hybrid contribution 0.307 -0.389 -0.412 0.644 sum -30.121 5.879 6.440 31.358 Atomic orbital electron populations 1.21794 0.94522 1.02019 1.01785 1.22009 0.95888 0.99168 0.94749 0.91138 1.22559 0.95565 1.00014 0.97489 1.22508 0.97702 1.01594 0.94556 1.22012 0.93051 1.01538 0.95050 0.89150 1.21862 0.83131 0.95108 0.99825 1.45721 1.07021 1.38532 1.41968 1.19451 0.84345 0.83578 0.82464 1.90800 1.84968 1.33262 1.32538 1.20377 0.83620 0.84347 0.81903 1.90684 1.84293 1.32003 1.31023 1.42129 1.05077 1.36162 1.41699 1.19339 0.87426 0.95348 0.97517 1.21758 0.98870 1.03204 1.07991 1.23254 0.90949 0.98919 0.95663 1.48912 1.09677 1.25041 1.28514 1.19383 0.70282 0.97364 0.97689 1.21384 0.93700 1.50758 0.93094 0.92985 1.25702 0.95113 0.94189 1.02972 1.69977 1.00067 1.49045 1.36632 0.85431 0.77478 0.78801 0.78904 1.20096 1.19711 1.19437 1.77319 1.00810 1.16359 1.22848 1.22224 0.95793 0.99026 0.97922 0.92607 0.92583 0.92343 0.90936 0.91541 0.90882 0.91874 0.90897 0.90723 0.74018 0.73426 0.80594 0.77599 0.95944 0.91890 0.91806 0.91240 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.13 71.98 0.66 -0.34 16 2 C -0.10 -0.79 3.46 -9.68 -0.03 -0.83 16 3 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 4 C -0.12 -0.95 6.33 31.88 0.20 -0.75 16 5 C -0.13 -1.12 6.05 31.67 0.19 -0.93 16 6 C -0.10 -0.83 2.97 -10.07 -0.03 -0.86 16 7 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 8 C 0.12 1.56 4.73 86.38 0.41 1.97 16 9 N -0.68 -11.01 5.39 -464.52 -2.50 -13.51 16 10 C 0.52 12.27 7.89 87.24 0.69 12.96 16 11 O -0.54 -15.11 16.48 -3.28 -0.05 -15.17 16 12 C 0.52 14.48 7.85 87.24 0.69 15.16 16 13 O -0.51 -14.94 13.60 -3.36 -0.05 -14.98 16 14 N -0.60 -19.53 5.43 -308.89 -1.68 -21.21 16 15 C 0.26 10.25 8.10 133.40 1.08 11.33 16 16 C -0.29 -10.59 9.60 22.12 0.21 -10.38 16 17 C 0.06 2.28 11.43 83.51 0.95 3.23 16 18 N -0.34 -15.69 3.67 -351.87 -1.29 -16.98 16 19 C 0.27 13.93 6.26 85.63 0.54 14.46 16 20 C -0.55 -31.07 9.23 25.60 0.24 -30.84 16 21 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 22 C 0.02 1.15 5.46 84.66 0.46 1.62 16 23 N -0.92 -51.82 13.29 21.45 0.28 -51.54 16 24 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 28 N -0.34 -16.04 12.42 -54.53 -0.68 -16.72 16 29 C -0.11 -0.86 6.04 31.35 0.19 -0.67 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.38 8.11 -2.39 -0.02 0.36 16 33 H 0.07 0.54 8.06 -2.39 -0.02 0.52 16 34 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.67 7.77 -2.39 -0.02 0.65 16 37 H 0.07 1.02 8.02 -2.39 -0.02 1.00 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.42 5.67 7.80 -92.71 -0.72 4.95 16 40 H 0.43 13.00 8.29 -92.71 -0.77 12.23 16 41 H 0.18 5.89 5.91 -2.91 -0.02 5.88 16 42 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16 43 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 3.12 8.07 -2.39 -0.02 3.10 16 45 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.07 0.55 7.67 -2.38 -0.02 0.53 16 47 H 0.08 0.52 7.82 -2.39 -0.02 0.50 16 Total: -1.00 -67.44 392.50 2.01 -65.43 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.49 Total: 23.75 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.44 Total: 15.16 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -5.86 Total: -119.96 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.10 Total: -30.15 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.44 2.01 -65.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362209084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.875 kcal (2) G-P(sol) polarization free energy of solvation -67.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds