Wall clock time and date at job start Tue Mar 31 2020 19:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.43727 * 2 1 4 4 C 1.54888 * 110.48571 * 237.32167 * 2 1 3 5 5 C 1.54889 * 102.74883 * 203.37877 * 4 2 1 6 6 C 1.54258 * 104.19597 * 37.94197 * 5 4 2 7 7 H 1.09001 * 110.07555 * 95.69425 * 6 5 4 8 8 C 1.52998 * 110.03220 * 217.10693 * 6 5 4 9 9 N 1.46506 * 109.47166 * 292.16374 * 8 6 5 10 10 C 1.34774 * 120.00095 * 179.97438 * 9 8 6 11 11 O 1.21363 * 119.99831 * 0.02562 * 10 9 8 12 12 C 1.49344 * 119.99915 * 179.97438 * 10 9 8 13 13 O 1.21380 * 119.99715 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99915 * 179.97438 * 12 10 9 15 15 C 1.39927 * 119.99865 * 180.02562 * 14 12 10 16 16 C 1.40457 * 125.98422 * 0.02562 * 15 14 12 17 17 C 1.35215 * 107.87160 * 179.97438 * 16 15 14 18 18 N 1.34992 * 107.87332 * 0.02562 * 17 16 15 19 19 C 1.46499 * 125.96803 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.46992 * 124.99754 * 19 18 17 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47094 * 90.00289 * 24 22 20 26 26 H 1.48505 * 109.47195 * 210.00171 * 24 22 20 27 27 H 1.48493 * 109.47449 * 330.00136 * 24 22 20 28 28 N 1.31280 * 125.97951 * 180.29373 * 15 14 12 29 29 C 1.53879 * 106.59849 * 336.38829 * 6 5 4 30 30 H 1.09000 * 109.46983 * 297.45415 * 1 2 3 31 31 H 1.09005 * 109.46978 * 57.45650 * 1 2 3 32 32 H 1.09002 * 109.47109 * 177.45117 * 1 2 3 33 33 H 1.08999 * 110.75656 * 321.69267 * 4 2 1 34 34 H 1.09003 * 110.75822 * 85.06204 * 4 2 1 35 35 H 1.08998 * 110.48477 * 279.26020 * 5 4 2 36 36 H 1.08999 * 110.48636 * 156.62127 * 5 4 2 37 37 H 1.09008 * 109.47512 * 172.16575 * 8 6 5 38 38 H 1.08994 * 109.47471 * 52.16691 * 8 6 5 39 39 H 0.97005 * 119.99446 * 0.02562 * 9 8 6 40 40 H 0.97001 * 119.99997 * 0.02562 * 14 12 10 41 41 H 1.08004 * 126.06148 * 359.97438 * 16 15 14 42 42 H 1.07996 * 126.06046 * 180.02562 * 17 16 15 43 43 H 1.09002 * 109.47391 * 4.99745 * 19 18 17 44 44 H 1.09001 * 109.46813 * 244.99801 * 19 18 17 45 45 H 0.97002 * 119.99768 * 179.97438 * 23 22 20 46 46 H 1.09000 * 110.02803 * 119.28339 * 29 6 5 47 47 H 1.08991 * 110.03398 * 240.66498 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7834 -1.2213 5 6 3.4907 -1.1988 -0.7586 6 6 3.3166 -1.5396 0.7357 7 1 3.1696 -2.6125 0.8601 8 6 4.5466 -1.0847 1.5238 9 7 5.7017 -1.9000 1.1397 10 6 6.9030 -1.6769 1.7086 11 8 7.0277 -0.8009 2.5392 12 6 8.0803 -2.5083 1.3175 13 8 7.9553 -3.3847 0.4870 14 7 9.2817 -2.2849 1.8859 15 6 10.3849 -3.0636 1.5191 16 6 10.3831 -4.1052 0.5768 17 6 11.6378 -4.6046 0.5080 18 7 12.4082 -3.9099 1.3718 19 6 13.8369 -4.1243 1.6146 20 6 14.5821 -2.8318 1.4023 21 1 14.0451 -1.9397 1.1155 22 6 15.9493 -2.7878 1.5751 23 7 16.6031 -3.8740 1.9247 24 14 16.8728 -1.1855 1.3125 25 1 16.9365 -0.4354 2.5926 26 1 18.2503 -1.4794 0.8420 27 1 16.1659 -0.3678 0.2944 28 7 11.6017 -2.9517 1.9990 29 6 2.0700 -0.7773 1.2181 30 1 -0.3633 0.4738 0.9119 31 1 -0.3633 0.5528 -0.8663 32 1 -0.3633 -1.0267 -0.0457 33 1 1.4581 -1.6617 -1.4203 34 1 2.1251 -0.1406 -2.1000 35 1 4.1897 -0.3717 -0.8824 36 1 3.8316 -2.0737 -1.3123 37 1 4.3581 -1.2017 2.5911 38 1 4.7520 -0.0371 1.3039 39 1 5.6019 -2.5998 0.4755 40 1 9.3816 -1.5843 2.5493 41 1 9.5307 -4.4467 0.0082 42 1 11.9653 -5.4154 -0.1257 43 1 14.2137 -4.8787 0.9239 44 1 13.9841 -4.4645 2.6397 45 1 17.5650 -3.8432 2.0460 46 1 1.3177 -1.4804 1.5757 47 1 2.3411 -0.0840 2.0142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362209085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:54 Heat of formation + Delta-G solvation = -26.682206 kcal Electronic energy + Delta-G solvation = -27361.957309 eV Core-core repulsion = 23352.065210 eV Total energy + Delta-G solvation = -4009.892099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.44982 -41.54305 -40.02570 -39.28792 -36.72558 -35.85010 -35.23555 -32.83711 -32.42345 -31.02175 -30.29294 -28.88749 -27.70641 -26.05014 -24.91072 -24.24939 -22.62743 -21.84690 -21.30425 -21.09226 -20.39795 -19.35831 -18.71273 -18.28768 -17.77787 -17.29315 -17.03521 -16.89151 -16.30347 -16.18721 -15.83024 -15.75797 -15.24138 -15.06818 -14.58245 -14.48203 -14.34331 -14.20533 -13.87441 -13.79921 -13.71782 -13.53987 -13.03098 -12.82278 -12.71958 -12.64455 -12.31536 -12.14652 -12.04743 -11.81753 -11.70370 -11.63286 -11.52576 -11.43629 -11.40457 -11.27532 -10.78505 -10.72597 -10.34367 -9.83705 -9.21911 -8.34209 -6.47756 0.04794 0.86936 1.13809 1.37733 1.39194 1.49960 1.74561 1.85037 2.26085 2.33883 2.60558 2.98253 3.24957 3.58368 3.66497 3.77727 3.91243 4.17889 4.22309 4.29272 4.45920 4.59586 4.63360 4.64135 4.70590 4.75036 4.78159 4.83875 4.88294 4.89941 4.94957 4.98778 5.02689 5.09650 5.12228 5.18316 5.21996 5.36763 5.38860 5.52042 5.55670 5.60455 5.74485 5.78463 5.85621 6.15873 6.25413 6.56245 6.63670 6.79027 6.96395 7.22272 8.73650 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027906 B = 0.001725 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.142831 B =16227.148371 C =16563.404422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.097 4.097 7 H 0.091 0.909 8 C 0.123 3.877 9 N -0.679 5.679 10 C 0.522 3.478 11 O -0.538 6.538 12 C 0.517 3.483 13 O -0.507 6.507 14 N -0.601 5.601 15 C 0.258 3.742 16 C -0.288 4.288 17 C 0.061 3.939 18 N -0.339 5.339 19 C 0.271 3.729 20 C -0.550 4.550 21 H 0.052 0.948 22 C 0.021 3.979 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.273 1.273 28 N -0.342 5.342 29 C -0.112 4.112 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.422 0.578 40 H 0.428 0.572 41 H 0.177 0.823 42 H 0.207 0.793 43 H 0.064 0.936 44 H 0.023 0.977 45 H 0.273 0.727 46 H 0.077 0.923 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.123 3.630 -5.404 32.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.164 4.164 6 C -0.116 4.116 7 H 0.109 0.891 8 C 0.001 3.999 9 N -0.332 5.332 10 C 0.302 3.698 11 O -0.416 6.416 12 C 0.298 3.702 13 O -0.380 6.380 14 N -0.251 5.251 15 C 0.004 3.996 16 C -0.318 4.318 17 C -0.088 4.088 18 N -0.121 5.121 19 C 0.153 3.847 20 C -0.588 4.588 21 H 0.070 0.930 22 C -0.180 4.180 23 N -0.557 5.557 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.198 1.198 28 N -0.174 5.174 29 C -0.150 4.150 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.260 0.740 40 H 0.266 0.734 41 H 0.194 0.806 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -31.120 4.164 -4.537 31.723 hybrid contribution 0.541 0.308 -0.344 0.711 sum -30.579 4.471 -4.880 31.287 Atomic orbital electron populations 1.21797 0.94504 1.02030 1.01784 1.21992 0.95916 0.99157 0.94776 0.91173 1.22564 0.95595 0.99985 0.97488 1.22511 0.97704 1.01559 0.94615 1.22011 0.93050 1.01568 0.94989 0.89062 1.21865 0.83265 0.94803 0.99995 1.45726 1.07262 1.37735 1.42522 1.19454 0.84306 0.83705 0.82380 1.90800 1.84769 1.32988 1.33015 1.20374 0.83580 0.84539 0.81751 1.90682 1.84109 1.31843 1.31363 1.42128 1.05359 1.35241 1.42340 1.19338 0.87357 0.95002 0.97928 1.21756 0.99058 1.02841 1.08175 1.23255 0.90789 0.99149 0.95592 1.48908 1.09597 1.23879 1.29757 1.19390 0.70108 0.97783 0.97464 1.21411 0.92831 0.95809 1.48789 0.93015 1.25699 0.97870 1.00411 0.94013 1.69984 1.09506 1.29347 1.46893 0.85370 0.77763 0.78848 0.78570 1.19980 1.19557 1.19808 1.77321 1.00723 1.15256 1.24055 1.22204 0.95816 0.99030 0.97909 0.92539 0.92662 0.92315 0.90893 0.91602 0.91950 0.90873 0.90631 0.90992 0.74015 0.73421 0.80591 0.77592 0.91864 0.95944 0.91808 0.90435 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.12 71.98 0.66 -0.35 16 2 C -0.10 -0.80 3.46 -9.72 -0.03 -0.84 16 3 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 4 C -0.12 -0.97 6.33 31.88 0.20 -0.77 16 5 C -0.13 -1.15 6.08 31.67 0.19 -0.95 16 6 C -0.10 -0.83 2.96 -10.07 -0.03 -0.85 16 7 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 8 C 0.12 1.56 4.73 86.38 0.41 1.97 16 9 N -0.68 -11.01 5.40 -464.51 -2.51 -13.52 16 10 C 0.52 12.27 7.89 87.24 0.69 12.96 16 11 O -0.54 -15.11 16.48 -3.29 -0.05 -15.17 16 12 C 0.52 14.48 7.85 87.24 0.69 15.17 16 13 O -0.51 -14.94 13.60 -3.34 -0.05 -14.98 16 14 N -0.60 -19.53 5.43 -308.90 -1.68 -21.21 16 15 C 0.26 10.26 8.10 133.40 1.08 11.34 16 16 C -0.29 -10.60 9.60 22.11 0.21 -10.38 16 17 C 0.06 2.28 11.43 83.51 0.95 3.23 16 18 N -0.34 -15.69 3.67 -351.84 -1.29 -16.98 16 19 C 0.27 13.91 6.26 85.63 0.54 14.45 16 20 C -0.55 -31.03 9.24 25.60 0.24 -30.80 16 21 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 22 C 0.02 1.14 5.46 84.66 0.46 1.60 16 23 N -0.92 -51.81 13.29 21.45 0.28 -51.52 16 24 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 28 N -0.34 -16.04 12.43 -54.54 -0.68 -16.72 16 29 C -0.11 -0.85 6.03 31.32 0.19 -0.66 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.06 0.38 8.12 -2.39 -0.02 0.36 16 33 H 0.07 0.55 8.04 -2.39 -0.02 0.53 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.69 7.76 -2.39 -0.02 0.67 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 1.02 8.00 -2.39 -0.02 1.00 16 39 H 0.42 5.67 7.82 -92.70 -0.73 4.94 16 40 H 0.43 13.00 8.29 -92.71 -0.77 12.23 16 41 H 0.18 5.90 5.91 -2.91 -0.02 5.88 16 42 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16 43 H 0.06 3.13 8.07 -2.39 -0.02 3.11 16 44 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.08 0.51 7.84 -2.39 -0.02 0.49 16 47 H 0.07 0.55 7.67 -2.39 -0.02 0.53 16 Total: -1.00 -67.53 392.53 2.00 -65.53 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.50 Total: 23.64 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.44 Total: 15.11 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -5.87 Total: -119.95 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.10 Total: -30.15 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -67.53 2.00 -65.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362209085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.846 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds