Wall clock time and date at job start Tue Mar 31 2020 19:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.43342 * 2 1 4 4 C 1.54268 * 110.48432 * 122.54061 * 2 1 3 5 5 C 1.53874 * 106.59760 * 142.42007 * 4 2 1 6 6 C 1.54265 * 106.59954 * 0.02562 * 5 4 2 7 7 H 1.09001 * 110.48861 * 95.06734 * 6 5 4 8 8 N 1.46497 * 110.48330 * 217.57843 * 6 5 4 9 9 C 1.46495 * 120.00197 * 56.75797 * 8 6 5 10 10 C 1.34779 * 119.99923 * 236.75031 * 8 6 5 11 11 O 1.21360 * 120.00006 * 5.35326 * 10 8 6 12 12 C 1.49347 * 120.00023 * 185.34262 * 10 8 6 13 13 O 1.21384 * 119.99821 * 6.00809 * 12 10 8 14 14 N 1.34777 * 119.99930 * 186.00937 * 12 10 8 15 15 C 1.39922 * 120.00012 * 180.02562 * 14 12 10 16 16 C 1.40461 * 125.98087 * 359.97438 * 15 14 12 17 17 C 1.35221 * 107.86696 * 180.02562 * 16 15 14 18 18 N 1.34980 * 107.87439 * 359.97438 * 17 16 15 19 19 C 1.46508 * 125.97091 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47176 * 125.00273 * 19 18 17 21 21 H 1.07994 * 120.00229 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99795 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00223 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47098 * 59.99692 * 24 22 20 26 26 H 1.48506 * 109.46847 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47107 * 299.99550 * 24 22 20 28 28 N 1.31278 * 125.98042 * 179.69180 * 15 14 12 29 29 C 1.54894 * 104.31085 * 336.31913 * 6 5 4 30 30 H 1.09003 * 109.47256 * 298.90965 * 1 2 3 31 31 H 1.09003 * 109.47170 * 58.91539 * 1 2 3 32 32 H 1.09007 * 109.47136 * 178.91225 * 1 2 3 33 33 H 1.08996 * 110.03277 * 23.13547 * 4 2 1 34 34 H 1.09002 * 110.03273 * 261.70597 * 4 2 1 35 35 H 1.08997 * 110.03759 * 240.70979 * 5 4 2 36 36 H 1.09004 * 110.07296 * 119.30431 * 5 4 2 37 37 H 1.08999 * 109.47404 * 95.23896 * 9 8 6 38 38 H 1.09009 * 109.47215 * 215.24094 * 9 8 6 39 39 H 1.09005 * 109.47305 * 335.23837 * 9 8 6 40 40 H 0.97000 * 119.99844 * 359.97438 * 14 12 10 41 41 H 1.08003 * 126.06504 * 359.97438 * 16 15 14 42 42 H 1.08003 * 126.06117 * 180.02562 * 17 16 15 43 43 H 1.08999 * 109.46907 * 245.00365 * 19 18 17 44 44 H 1.09002 * 109.46507 * 4.99991 * 19 18 17 45 45 H 0.96993 * 120.00004 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.75472 * 156.32570 * 29 6 5 47 47 H 1.08995 * 110.75644 * 279.69680 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0699 -0.7773 1.2183 5 6 3.3184 -1.5370 0.7369 6 6 3.4941 -1.1942 -0.7569 7 1 4.1920 -0.3658 -0.8788 8 7 3.9583 -2.3677 -1.5010 9 6 3.1818 -3.6095 -1.4692 10 6 5.0997 -2.3048 -2.2150 11 8 5.7931 -1.3101 -2.1643 12 6 5.5113 -3.4593 -3.0683 13 8 4.7672 -4.4085 -3.2053 14 7 6.7090 -3.4473 -3.6863 15 6 7.0944 -4.5286 -4.4862 16 6 6.3364 -5.6855 -4.7310 17 6 7.0551 -6.4870 -5.5492 18 7 8.2236 -5.8661 -5.8158 19 6 9.2995 -6.3844 -6.6645 20 6 9.6221 -5.3770 -7.7378 21 1 9.0797 -4.4442 -7.7835 22 6 10.6090 -5.6466 -8.6621 23 7 11.2692 -6.7827 -8.6068 24 14 11.0084 -4.3982 -9.9930 25 1 11.4443 -3.1259 -9.3634 26 1 12.0990 -4.9235 -10.8532 27 1 9.7997 -4.1526 -10.8201 28 7 8.2256 -4.6372 -5.1435 29 6 2.0762 -0.7819 -1.2245 30 1 -0.3634 0.4968 0.8996 31 1 -0.3634 0.5306 -0.8801 32 1 -0.3634 -1.0275 -0.0195 33 1 1.3184 -1.4819 1.5745 34 1 2.3389 -0.0834 2.0146 35 1 3.1730 -2.6102 0.8595 36 1 4.1939 -1.2124 1.2994 37 1 2.5229 -3.6484 -2.3366 38 1 3.8599 -4.4628 -1.4894 39 1 2.5847 -3.6415 -0.5577 40 1 7.3035 -2.6886 -3.5771 41 1 5.3542 -5.8977 -4.3351 42 1 6.7482 -7.4524 -5.9238 43 1 10.1864 -6.5648 -6.0571 44 1 8.9795 -7.3182 -7.1268 45 1 11.9637 -6.9722 -9.2568 46 1 2.1308 -0.1395 -2.1034 47 1 1.4646 -1.6615 -1.4251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429916947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:12 Heat of formation + Delta-G solvation = -2.843089 kcal Electronic energy + Delta-G solvation = -28190.955925 eV Core-core repulsion = 24182.097567 eV Total energy + Delta-G solvation = -4008.858358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.52165 -41.72755 -40.13100 -39.01060 -36.86255 -35.82307 -35.20975 -32.83373 -31.70463 -31.01635 -29.67005 -28.83622 -28.03722 -26.78050 -25.46241 -24.50387 -22.80466 -21.88773 -21.07419 -20.85851 -20.28345 -18.92684 -18.70181 -18.35014 -18.01540 -17.35314 -17.05507 -16.67804 -16.55410 -16.19752 -15.84595 -15.47749 -15.21887 -14.64020 -14.59447 -14.35668 -14.25341 -14.07193 -14.00585 -13.87544 -13.71588 -13.40294 -13.25194 -12.92567 -12.76397 -12.58794 -12.47606 -12.38747 -12.28820 -12.11421 -11.82079 -11.67850 -11.63710 -11.51865 -11.42842 -11.22908 -10.72832 -10.55642 -9.89735 -9.79500 -9.20521 -8.34128 -6.47629 0.03405 0.84016 1.13577 1.37729 1.39771 1.48304 1.71970 1.78777 2.23997 2.32480 2.46802 2.98117 3.08997 3.57214 3.63960 3.87140 3.91661 4.19359 4.22702 4.30277 4.35072 4.47509 4.49420 4.60359 4.66941 4.69695 4.72762 4.83749 4.84085 4.87695 4.90662 4.99816 5.01560 5.04752 5.13730 5.17443 5.21536 5.29047 5.37483 5.41609 5.55449 5.56633 5.75671 5.79235 5.85722 6.03443 6.25362 6.48257 6.63376 6.74036 6.96979 7.22142 8.73421 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027347 B = 0.001986 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.640264 B =14093.283433 C =14547.340048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.132 4.132 6 C 0.125 3.875 7 H 0.091 0.909 8 N -0.567 5.567 9 C 0.070 3.930 10 C 0.516 3.484 11 O -0.543 6.543 12 C 0.516 3.484 13 O -0.495 6.495 14 N -0.603 5.603 15 C 0.259 3.741 16 C -0.286 4.286 17 C 0.060 3.940 18 N -0.340 5.340 19 C 0.271 3.729 20 C -0.550 4.550 21 H 0.051 0.949 22 C 0.020 3.980 23 N -0.918 5.918 24 Si 0.969 3.031 25 H -0.276 1.276 26 H -0.272 1.272 27 H -0.269 1.269 28 N -0.344 5.344 29 C -0.125 4.125 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.426 0.574 41 H 0.179 0.821 42 H 0.207 0.793 43 H 0.023 0.977 44 H 0.064 0.936 45 H 0.273 0.727 46 H 0.063 0.937 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.129 8.837 19.846 31.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.171 4.171 6 C 0.023 3.977 7 H 0.109 0.891 8 N -0.299 5.299 9 C -0.071 4.071 10 C 0.297 3.703 11 O -0.421 6.421 12 C 0.297 3.703 13 O -0.368 6.368 14 N -0.252 5.252 15 C 0.005 3.995 16 C -0.316 4.316 17 C -0.088 4.088 18 N -0.122 5.122 19 C 0.153 3.847 20 C -0.588 4.588 21 H 0.069 0.931 22 C -0.181 4.181 23 N -0.557 5.557 24 Si 0.793 3.207 25 H -0.201 1.201 26 H -0.197 1.197 27 H -0.194 1.194 28 N -0.175 5.175 29 C -0.163 4.163 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.264 0.736 41 H 0.196 0.804 42 H 0.224 0.776 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.986 9.068 19.374 30.675 hybrid contribution 0.438 0.450 -0.749 0.977 sum -21.548 9.517 18.625 30.030 Atomic orbital electron populations 1.21777 0.93756 1.02307 1.02053 1.21955 0.96441 0.99119 0.93707 0.90635 1.22160 0.96213 0.99092 0.97531 1.22504 0.99428 1.02004 0.93123 1.22342 0.96828 0.86750 0.91826 0.89087 1.47806 1.21470 1.15208 1.45389 1.22298 0.96964 0.84141 1.03671 1.19644 0.82743 0.86628 0.81247 1.90770 1.53029 1.33324 1.64987 1.20253 0.81029 0.87901 0.81094 1.90655 1.51082 1.34839 1.60224 1.42149 1.18788 1.19391 1.44875 1.19330 0.94008 0.90401 0.95776 1.21760 1.04699 0.94761 1.10414 1.23261 0.86252 1.00862 0.98455 1.48906 1.15599 1.11661 1.36011 1.19385 0.83228 0.94756 0.87363 1.21366 1.20685 1.03776 1.12951 0.93068 1.25705 0.94966 0.97607 0.99790 1.69976 1.23936 1.24306 1.37470 0.85438 0.78191 0.78684 0.78347 1.20126 1.19699 1.19432 1.77329 1.20712 1.03846 1.15618 1.22976 0.94017 1.00887 0.98461 0.91857 0.92780 0.92081 0.90198 0.90877 0.90053 0.91445 0.91298 0.89822 0.88258 0.73643 0.80423 0.77603 0.95949 0.91870 0.91813 0.91795 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.13 71.98 0.66 -0.35 16 2 C -0.09 -0.84 3.46 -9.60 -0.03 -0.87 16 3 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.11 -0.88 6.37 31.32 0.20 -0.68 16 5 C -0.13 -1.48 6.32 31.32 0.20 -1.28 16 6 C 0.12 1.94 3.25 46.07 0.15 2.09 16 7 H 0.09 1.78 6.99 -2.39 -0.02 1.77 16 8 N -0.57 -10.76 2.86 -818.27 -2.34 -13.10 16 9 C 0.07 1.04 7.90 127.77 1.01 2.04 16 10 C 0.52 13.25 7.72 87.24 0.67 13.93 16 11 O -0.54 -16.37 15.86 -3.28 -0.05 -16.42 16 12 C 0.52 14.89 7.66 87.24 0.67 15.56 16 13 O -0.49 -14.31 10.50 -3.35 -0.04 -14.35 16 14 N -0.60 -19.98 5.43 -308.89 -1.68 -21.66 16 15 C 0.26 10.32 8.10 133.40 1.08 11.40 16 16 C -0.29 -10.42 9.60 22.12 0.21 -10.21 16 17 C 0.06 2.25 11.43 83.51 0.95 3.21 16 18 N -0.34 -15.71 3.67 -351.83 -1.29 -17.00 16 19 C 0.27 13.94 6.26 85.63 0.54 14.47 16 20 C -0.55 -31.05 9.23 25.60 0.24 -30.82 16 21 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 22 C 0.02 1.11 5.46 84.65 0.46 1.57 16 23 N -0.92 -51.89 13.29 21.45 0.28 -51.61 16 24 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 N -0.34 -16.18 12.42 -54.54 -0.68 -16.86 16 29 C -0.13 -1.50 5.90 32.00 0.19 -1.32 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.08 0.48 7.84 -2.39 -0.02 0.46 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.81 6.19 -2.39 -0.01 0.79 16 36 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 38 H 0.08 1.49 5.95 -2.38 -0.01 1.48 16 39 H 0.10 0.89 6.35 -2.38 -0.02 0.87 16 40 H 0.43 13.40 8.31 -92.71 -0.77 12.63 16 41 H 0.18 5.82 5.91 -2.91 -0.02 5.80 16 42 H 0.21 5.85 8.06 -2.91 -0.02 5.83 16 43 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 3.13 8.07 -2.39 -0.02 3.11 16 45 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 0.90 7.18 -2.39 -0.02 0.89 16 Total: -1.00 -67.43 382.91 3.66 -63.77 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.23 Total: 22.54 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 7.19 Total: 18.73 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -5.70 Total: -120.23 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.09 Total: -30.76 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -67.43 3.66 -63.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429916947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.931 kcal (2) G-P(sol) polarization free energy of solvation -67.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds