Wall clock time and date at job start Tue Mar 31 2020 19:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.01407 * 2 1 4 4 C 1.53875 * 110.03801 * 121.43969 * 2 1 3 5 5 C 1.54265 * 106.59670 * 119.28503 * 4 2 1 6 6 C 1.54889 * 104.19790 * 23.61579 * 5 4 2 7 7 C 1.54265 * 110.03417 * 238.61211 * 2 1 3 8 8 H 1.08995 * 110.48827 * 335.91092 * 7 2 1 9 9 C 1.53004 * 110.48845 * 98.42245 * 7 2 1 10 10 N 1.46499 * 109.47198 * 185.00135 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.27868 * 10 9 7 12 12 O 1.21363 * 120.00411 * 359.72017 * 11 10 9 13 13 C 1.49344 * 119.99833 * 179.72288 * 11 10 9 14 14 O 1.21393 * 119.99777 * 0.02562 * 13 11 10 15 15 N 1.34773 * 120.00203 * 179.97438 * 13 11 10 16 16 C 1.39927 * 120.00263 * 180.02562 * 15 13 11 17 17 C 1.40465 * 125.97847 * 359.72045 * 16 15 13 18 18 C 1.35215 * 107.86564 * 179.82660 * 17 16 15 19 19 N 1.34993 * 107.87803 * 0.42831 * 18 17 16 20 20 C 1.46499 * 125.97261 * 179.68812 * 19 18 17 21 21 C 1.50698 * 109.46618 * 125.01953 * 20 19 18 22 22 H 1.08000 * 120.00422 * 359.97438 * 21 20 19 23 23 C 1.37883 * 120.00013 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99473 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00411 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47075 * 59.99643 * 25 23 21 27 27 H 1.48498 * 109.47387 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47042 * 300.00005 * 25 23 21 29 29 N 1.31271 * 125.98578 * 180.02562 * 16 15 13 30 30 H 1.09007 * 109.46486 * 181.39245 * 1 2 3 31 31 H 1.08997 * 109.47230 * 301.38685 * 1 2 3 32 32 H 1.08993 * 109.47586 * 61.39121 * 1 2 3 33 33 H 1.08995 * 110.04074 * 238.57435 * 4 2 1 34 34 H 1.09000 * 110.02591 * 0.02562 * 4 2 1 35 35 H 1.08998 * 110.48375 * 142.29545 * 5 4 2 36 36 H 1.09005 * 110.48809 * 264.80128 * 5 4 2 37 37 H 1.08999 * 110.75678 * 203.74428 * 6 5 4 38 38 H 1.09002 * 110.75322 * 80.36928 * 6 5 4 39 39 H 1.09009 * 109.46730 * 64.99922 * 9 7 2 40 40 H 1.08998 * 109.46846 * 305.00467 * 9 7 2 41 41 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 42 42 H 0.97000 * 120.00112 * 0.02562 * 15 13 11 43 43 H 1.08000 * 126.06717 * 359.97438 * 17 16 15 44 44 H 1.08002 * 126.06262 * 180.15426 * 18 17 16 45 45 H 1.08996 * 109.47144 * 245.02199 * 20 19 18 46 46 H 1.08997 * 109.47080 * 5.02028 * 20 19 18 47 47 H 0.97002 * 119.99982 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0572 -0.7540 1.2334 5 6 2.8876 -1.9408 0.7026 6 6 3.3138 -1.5003 -0.7199 7 6 2.0585 -0.7548 -1.2372 8 1 1.3135 -1.4636 -1.5987 9 6 2.4392 0.2309 -2.3438 10 7 2.8240 -0.5106 -3.5472 11 6 3.2061 0.1547 -4.6552 12 8 3.2264 1.3682 -4.6578 13 6 3.6044 -0.6013 -5.8801 14 8 3.5836 -1.8151 -5.8777 15 7 3.9859 0.0640 -6.9883 16 6 4.3586 -0.6444 -8.1361 17 6 4.3868 -2.0423 -8.2702 18 6 4.7962 -2.3303 -9.5263 19 7 5.0291 -1.1635 -10.1641 20 6 5.4948 -1.0157 -11.5451 21 6 4.5371 -0.1362 -12.3067 22 1 3.6682 0.2716 -11.8117 23 6 4.7696 0.1472 -13.6360 24 7 5.8274 -0.3498 -14.2389 25 14 3.5828 1.2381 -14.5799 26 1 3.5180 2.5738 -13.9343 27 1 4.0542 1.3868 -15.9802 28 1 2.2324 0.6202 -14.5757 29 7 4.7483 -0.1189 -9.2741 30 1 -0.3632 -1.0275 0.0250 31 1 -0.3633 0.5352 0.8773 32 1 -0.3634 0.4920 -0.9021 33 1 2.6868 -0.0962 1.8324 34 1 1.2230 -1.1204 1.8317 35 1 3.7638 -2.1042 1.3300 36 1 2.2779 -2.8434 0.6580 37 1 3.5326 -2.3671 -1.3434 38 1 4.1711 -0.8285 -0.6755 39 1 3.2767 0.8443 -2.0115 40 1 1.5865 0.8715 -2.5688 41 1 2.8081 -1.4805 -3.5450 42 1 4.0022 1.0338 -6.9903 43 1 4.1254 -2.7598 -7.5065 44 1 4.9198 -3.3187 -9.9438 45 1 6.4857 -0.5617 -11.5478 46 1 5.5432 -1.9961 -12.0191 47 1 5.9912 -0.1501 -15.1739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440122720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:19 Heat of formation + Delta-G solvation = -6.670640 kcal Electronic energy + Delta-G solvation = -27503.422785 eV Core-core repulsion = 23494.398453 eV Total energy + Delta-G solvation = -4009.024333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.09978 -40.28309 -39.32476 -38.34538 -35.53442 -34.56719 -33.35911 -31.69409 -31.05052 -30.46502 -29.42080 -27.16779 -26.40555 -25.30461 -23.76739 -22.74243 -21.38504 -20.94918 -20.60414 -19.97591 -19.52942 -18.33628 -17.00470 -16.62034 -16.43888 -16.24880 -16.10956 -15.45095 -15.30642 -15.05217 -14.84975 -14.38525 -14.19370 -14.03930 -13.90424 -13.56688 -13.35380 -12.95962 -12.90605 -12.42172 -12.41704 -12.28933 -11.90497 -11.65382 -11.50157 -11.40197 -11.20133 -11.13631 -11.07149 -11.06333 -10.86665 -10.84802 -10.55577 -10.27336 -10.03984 -9.58715 -9.55070 -9.52614 -8.64441 -8.23628 -7.58722 -6.25955 -4.31224 1.19879 2.05238 2.65869 3.02820 3.18532 3.25717 3.28934 3.34156 3.65999 3.83333 4.02711 4.10453 4.16366 4.30351 4.40050 4.70715 4.80796 4.84589 4.94658 4.99469 5.09334 5.09895 5.12127 5.27078 5.39659 5.40946 5.42270 5.51154 5.56315 5.66887 5.70683 5.71743 5.75685 5.86188 5.93180 5.99795 6.09854 6.31129 6.40561 6.78708 6.88991 7.01668 7.23872 7.35767 7.61699 7.68663 7.84583 7.94893 7.97347 8.53584 8.77005 9.34585 10.82779 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028334 B = 0.001790 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.969388 B =15636.246969 C =16244.411317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.103 4.103 8 H 0.086 0.914 9 C 0.125 3.875 10 N -0.699 5.699 11 C 0.515 3.485 12 O -0.516 6.516 13 C 0.512 3.488 14 O -0.500 6.500 15 N -0.598 5.598 16 C 0.250 3.750 17 C -0.286 4.286 18 C 0.053 3.947 19 N -0.314 5.314 20 C 0.257 3.743 21 C -0.531 4.531 22 H 0.069 0.931 23 C 0.063 3.937 24 N -0.895 5.895 25 Si 0.909 3.091 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.275 1.275 29 N -0.294 5.294 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.414 0.586 42 H 0.423 0.577 43 H 0.161 0.839 44 H 0.170 0.830 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -3.533 29.703 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.159 4.159 5 C -0.162 4.162 6 C -0.161 4.161 7 C -0.122 4.122 8 H 0.104 0.896 9 C 0.002 3.998 10 N -0.353 5.353 11 C 0.295 3.705 12 O -0.391 6.391 13 C 0.292 3.708 14 O -0.374 6.374 15 N -0.246 5.246 16 C -0.003 4.003 17 C -0.317 4.317 18 C -0.097 4.097 19 N -0.096 5.096 20 C 0.140 3.860 21 C -0.569 4.569 22 H 0.087 0.913 23 C -0.140 4.140 24 N -0.533 5.533 25 Si 0.736 3.264 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 N -0.126 5.126 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.250 0.750 42 H 0.261 0.739 43 H 0.178 0.822 44 H 0.188 0.812 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.825 -2.423 28.778 29.675 hybrid contribution -0.710 -0.115 -0.277 0.770 sum -7.534 -2.537 28.501 29.589 Atomic orbital electron populations 1.21911 0.94671 1.01938 1.01906 1.21704 0.95896 0.99601 0.93556 0.90533 1.22226 0.99513 0.97042 0.97077 1.22340 0.99614 0.98055 0.96226 1.22627 0.97097 1.00105 0.96265 1.22372 0.98277 0.97212 0.94331 0.89557 1.21582 1.00886 0.94302 0.83032 1.45698 1.66390 1.11597 1.11586 1.19886 0.78733 0.87542 0.84318 1.90797 1.51622 1.13218 1.83459 1.19932 0.79267 0.87654 0.83949 1.90707 1.50795 1.13043 1.82816 1.41998 1.62663 1.11177 1.08805 1.19016 1.02804 0.91083 0.87348 1.21514 1.17738 0.93751 0.98689 1.22584 1.01285 0.92659 0.93145 1.49171 1.46853 1.01542 1.12060 1.19794 0.96355 0.99506 0.70340 1.21212 1.09627 1.30940 0.95153 0.91304 1.24942 0.95783 0.96029 0.97253 1.69907 1.26754 1.44385 1.12236 0.86371 0.80762 0.80892 0.78400 1.19882 1.21028 1.20038 1.77407 1.24147 1.12765 0.98259 0.92499 0.92556 0.92478 0.91768 0.91600 0.91618 0.91561 0.91163 0.91013 0.90692 0.90776 0.74969 0.73947 0.82163 0.81233 0.93543 0.92370 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.84 37.16 0.33 -0.36 16 2 C -0.09 -0.43 3.07 -89.50 -0.27 -0.71 16 3 H 0.08 0.39 7.84 -51.93 -0.41 -0.02 16 4 C -0.12 -0.56 6.46 -25.61 -0.17 -0.72 16 5 C -0.12 -0.60 6.83 -25.07 -0.17 -0.77 16 6 C -0.12 -0.65 6.19 -24.74 -0.15 -0.81 16 7 C -0.10 -0.55 2.42 -88.96 -0.22 -0.77 16 8 H 0.09 0.45 7.85 -51.93 -0.41 0.05 16 9 C 0.12 0.90 4.96 -4.04 -0.02 0.88 16 10 N -0.70 -6.28 5.44 -60.76 -0.33 -6.61 16 11 C 0.52 6.36 7.89 -11.63 -0.09 6.27 16 12 O -0.52 -7.45 16.48 5.49 0.09 -7.35 16 13 C 0.51 7.46 7.85 -11.64 -0.09 7.37 16 14 O -0.50 -7.80 13.60 5.46 0.07 -7.73 16 15 N -0.60 -9.81 5.43 -11.58 -0.06 -9.88 16 16 C 0.25 5.00 8.10 -154.55 -1.25 3.75 16 17 C -0.29 -5.43 9.60 -39.82 -0.38 -5.82 16 18 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 19 N -0.31 -7.19 3.67 -62.56 -0.23 -7.42 16 20 C 0.26 6.46 6.26 -5.20 -0.03 6.42 16 21 C -0.53 -14.69 9.24 -34.44 -0.32 -15.01 16 22 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 25 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 29 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 30 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.29 7.67 -51.93 -0.40 -0.11 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.41 7.97 -51.93 -0.41 0.00 16 39 H 0.07 0.57 8.02 -51.92 -0.42 0.16 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.41 3.23 7.91 -40.82 -0.32 2.91 16 42 H 0.42 6.39 8.29 -40.82 -0.34 6.05 16 43 H 0.16 2.85 5.91 -52.49 -0.31 2.54 16 44 H 0.17 2.62 8.06 -52.49 -0.42 2.19 16 45 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 47 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -31.55 392.76 -8.77 -40.33 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.21 Total: 5.01 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -3.13 Total: 2.19 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.50 Total: -54.70 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.16 Total: -15.08 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.55 -8.77 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440122720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.655 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds