Wall clock time and date at job start Tue Mar 31 2020 19:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.01407 * 2 1 4 4 C 1.53875 * 110.03801 * 121.43969 * 2 1 3 5 5 C 1.54265 * 106.59670 * 119.28503 * 4 2 1 6 6 C 1.54889 * 104.19790 * 23.61579 * 5 4 2 7 7 C 1.54265 * 110.03417 * 238.61211 * 2 1 3 8 8 H 1.08995 * 110.48827 * 335.91092 * 7 2 1 9 9 C 1.53004 * 110.48845 * 98.42245 * 7 2 1 10 10 N 1.46499 * 109.47198 * 185.00135 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.27868 * 10 9 7 12 12 O 1.21363 * 120.00411 * 359.72017 * 11 10 9 13 13 C 1.49344 * 119.99833 * 179.72288 * 11 10 9 14 14 O 1.21393 * 119.99777 * 0.02562 * 13 11 10 15 15 N 1.34773 * 120.00203 * 179.97438 * 13 11 10 16 16 C 1.39927 * 120.00263 * 180.02562 * 15 13 11 17 17 C 1.40465 * 125.97847 * 359.72045 * 16 15 13 18 18 C 1.35215 * 107.86564 * 179.82660 * 17 16 15 19 19 N 1.34993 * 107.87803 * 0.42831 * 18 17 16 20 20 C 1.46499 * 125.97261 * 179.68812 * 19 18 17 21 21 C 1.50698 * 109.46618 * 125.01953 * 20 19 18 22 22 H 1.08000 * 120.00422 * 359.97438 * 21 20 19 23 23 C 1.37883 * 120.00013 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99473 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00411 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47075 * 59.99643 * 25 23 21 27 27 H 1.48498 * 109.47387 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47042 * 300.00005 * 25 23 21 29 29 N 1.31271 * 125.98578 * 180.02562 * 16 15 13 30 30 H 1.09007 * 109.46486 * 181.39245 * 1 2 3 31 31 H 1.08997 * 109.47230 * 301.38685 * 1 2 3 32 32 H 1.08993 * 109.47586 * 61.39121 * 1 2 3 33 33 H 1.08995 * 110.04074 * 238.57435 * 4 2 1 34 34 H 1.09000 * 110.02591 * 0.02562 * 4 2 1 35 35 H 1.08998 * 110.48375 * 142.29545 * 5 4 2 36 36 H 1.09005 * 110.48809 * 264.80128 * 5 4 2 37 37 H 1.08999 * 110.75678 * 203.74428 * 6 5 4 38 38 H 1.09002 * 110.75322 * 80.36928 * 6 5 4 39 39 H 1.09009 * 109.46730 * 64.99922 * 9 7 2 40 40 H 1.08998 * 109.46846 * 305.00467 * 9 7 2 41 41 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 42 42 H 0.97000 * 120.00112 * 0.02562 * 15 13 11 43 43 H 1.08000 * 126.06717 * 359.97438 * 17 16 15 44 44 H 1.08002 * 126.06262 * 180.15426 * 18 17 16 45 45 H 1.08996 * 109.47144 * 245.02199 * 20 19 18 46 46 H 1.08997 * 109.47080 * 5.02028 * 20 19 18 47 47 H 0.97002 * 119.99982 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0572 -0.7540 1.2334 5 6 2.8876 -1.9408 0.7026 6 6 3.3138 -1.5003 -0.7199 7 6 2.0585 -0.7548 -1.2372 8 1 1.3135 -1.4636 -1.5987 9 6 2.4392 0.2309 -2.3438 10 7 2.8240 -0.5106 -3.5472 11 6 3.2061 0.1547 -4.6552 12 8 3.2264 1.3682 -4.6578 13 6 3.6044 -0.6013 -5.8801 14 8 3.5836 -1.8151 -5.8777 15 7 3.9859 0.0640 -6.9883 16 6 4.3586 -0.6444 -8.1361 17 6 4.3868 -2.0423 -8.2702 18 6 4.7962 -2.3303 -9.5263 19 7 5.0291 -1.1635 -10.1641 20 6 5.4948 -1.0157 -11.5451 21 6 4.5371 -0.1362 -12.3067 22 1 3.6682 0.2716 -11.8117 23 6 4.7696 0.1472 -13.6360 24 7 5.8274 -0.3498 -14.2389 25 14 3.5828 1.2381 -14.5799 26 1 3.5180 2.5738 -13.9343 27 1 4.0542 1.3868 -15.9802 28 1 2.2324 0.6202 -14.5757 29 7 4.7483 -0.1189 -9.2741 30 1 -0.3632 -1.0275 0.0250 31 1 -0.3633 0.5352 0.8773 32 1 -0.3634 0.4920 -0.9021 33 1 2.6868 -0.0962 1.8324 34 1 1.2230 -1.1204 1.8317 35 1 3.7638 -2.1042 1.3300 36 1 2.2779 -2.8434 0.6580 37 1 3.5326 -2.3671 -1.3434 38 1 4.1711 -0.8285 -0.6755 39 1 3.2767 0.8443 -2.0115 40 1 1.5865 0.8715 -2.5688 41 1 2.8081 -1.4805 -3.5450 42 1 4.0022 1.0338 -6.9903 43 1 4.1254 -2.7598 -7.5065 44 1 4.9198 -3.3187 -9.9438 45 1 6.4857 -0.5617 -11.5478 46 1 5.5432 -1.9961 -12.0191 47 1 5.9912 -0.1501 -15.1739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440122720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:17 Heat of formation + Delta-G solvation = -26.326899 kcal Electronic energy + Delta-G solvation = -27504.275145 eV Core-core repulsion = 23494.398453 eV Total energy + Delta-G solvation = -4009.876692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.44794 -41.54283 -40.06278 -39.31742 -36.69815 -35.75392 -35.20274 -32.83466 -32.07620 -31.09534 -31.01983 -28.83636 -27.26795 -26.17562 -24.93280 -24.10662 -22.62761 -21.89680 -21.43308 -21.14539 -20.33990 -19.41550 -18.70586 -18.26683 -17.74060 -17.27312 -16.91877 -16.87941 -16.26313 -16.10101 -15.83325 -15.79145 -15.36864 -15.03757 -14.68667 -14.57834 -14.31105 -14.20047 -13.87290 -13.75621 -13.71727 -13.44553 -13.03368 -12.85993 -12.80019 -12.64632 -12.30372 -12.14836 -11.94232 -11.89194 -11.66001 -11.60963 -11.56882 -11.46548 -11.43873 -11.22577 -10.78093 -10.71975 -10.34211 -9.83567 -9.21732 -8.33719 -6.47273 0.04935 0.86866 1.13998 1.38405 1.40316 1.48943 1.74676 1.84911 2.26248 2.34114 2.60343 2.98631 3.24706 3.57508 3.67455 3.73933 3.91359 4.22349 4.27373 4.32863 4.45281 4.49726 4.56330 4.63604 4.70547 4.71153 4.79516 4.84019 4.88461 4.89746 4.95175 5.01098 5.03051 5.07989 5.12022 5.20482 5.29634 5.35204 5.37716 5.51903 5.55769 5.58507 5.74647 5.78648 5.85753 6.15934 6.25571 6.56323 6.63747 6.79100 6.96626 7.22524 8.73862 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028334 B = 0.001790 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.969388 B =15636.246969 C =16244.411317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.095 4.095 8 H 0.092 0.908 9 C 0.124 3.876 10 N -0.679 5.679 11 C 0.523 3.477 12 O -0.538 6.538 13 C 0.517 3.483 14 O -0.507 6.507 15 N -0.601 5.601 16 C 0.258 3.742 17 C -0.287 4.287 18 C 0.061 3.939 19 N -0.339 5.339 20 C 0.271 3.729 21 C -0.550 4.550 22 H 0.052 0.948 23 C 0.020 3.980 24 N -0.919 5.919 25 Si 0.970 3.030 26 H -0.275 1.275 27 H -0.273 1.273 28 H -0.269 1.269 29 N -0.342 5.342 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.422 0.578 42 H 0.428 0.572 43 H 0.177 0.823 44 H 0.207 0.793 45 H 0.023 0.977 46 H 0.063 0.937 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.334 -4.228 31.104 32.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.161 4.161 6 C -0.162 4.162 7 C -0.114 4.114 8 H 0.110 0.890 9 C 0.002 3.998 10 N -0.332 5.332 11 C 0.302 3.698 12 O -0.415 6.415 13 C 0.298 3.702 14 O -0.380 6.380 15 N -0.251 5.251 16 C 0.004 3.996 17 C -0.318 4.318 18 C -0.088 4.088 19 N -0.121 5.121 20 C 0.153 3.847 21 C -0.588 4.588 22 H 0.070 0.930 23 C -0.181 4.181 24 N -0.557 5.557 25 Si 0.794 3.206 26 H -0.201 1.201 27 H -0.197 1.197 28 H -0.194 1.194 29 N -0.173 5.173 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.260 0.740 42 H 0.266 0.734 43 H 0.194 0.806 44 H 0.224 0.776 45 H 0.041 0.959 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.981 -3.152 30.235 31.429 hybrid contribution -0.370 0.042 -0.536 0.653 sum -8.351 -3.109 29.699 31.007 Atomic orbital electron populations 1.21904 0.94417 1.02103 1.01910 1.21701 0.96076 0.99511 0.93389 0.90682 1.22222 0.99662 0.96954 0.96922 1.22338 0.99779 0.98205 0.95822 1.22636 0.96811 1.00029 0.96745 1.22326 0.98484 0.96831 0.93764 0.89003 1.21739 1.00784 0.94707 0.82564 1.45703 1.64416 1.12088 1.10978 1.19449 0.79150 0.87006 0.84212 1.90801 1.53139 1.13934 1.83671 1.20372 0.78193 0.87661 0.84009 1.90685 1.50808 1.13507 1.83001 1.42125 1.63093 1.11464 1.08375 1.19336 1.00954 0.91885 0.87448 1.21757 1.17584 0.93522 0.98948 1.23256 0.99446 0.93126 0.92977 1.48910 1.48899 1.02694 1.11646 1.19386 0.94718 0.98935 0.71702 1.21374 1.09730 1.31834 0.95882 0.93001 1.25709 0.97303 0.97093 0.97956 1.69980 1.27884 1.45156 1.12692 0.85429 0.78884 0.78842 0.77453 1.20077 1.19738 1.19435 1.77319 1.26531 1.13931 0.99548 0.92263 0.92179 0.92871 0.91663 0.91161 0.91422 0.91261 0.91018 0.91497 0.90789 0.90825 0.74021 0.73424 0.80592 0.77604 0.95933 0.91885 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.84 71.98 0.64 -0.50 16 2 C -0.09 -0.71 3.07 -10.07 -0.03 -0.74 16 3 H 0.07 0.65 7.84 -2.39 -0.02 0.63 16 4 C -0.12 -0.89 6.46 31.32 0.20 -0.69 16 5 C -0.12 -0.96 6.83 31.67 0.22 -0.74 16 6 C -0.12 -1.10 6.19 31.89 0.20 -0.91 16 7 C -0.10 -0.84 2.42 -9.72 -0.02 -0.87 16 8 H 0.09 0.76 7.85 -2.39 -0.02 0.74 16 9 C 0.12 1.60 4.96 86.38 0.43 2.03 16 10 N -0.68 -11.02 5.44 -464.50 -2.53 -13.55 16 11 C 0.52 12.27 7.89 87.24 0.69 12.95 16 12 O -0.54 -15.09 16.48 -3.29 -0.05 -15.14 16 13 C 0.52 14.46 7.85 87.24 0.69 15.15 16 14 O -0.51 -14.92 13.60 -3.38 -0.05 -14.96 16 15 N -0.60 -19.50 5.43 -308.89 -1.68 -21.18 16 16 C 0.26 10.25 8.10 133.40 1.08 11.33 16 17 C -0.29 -10.57 9.60 22.12 0.21 -10.36 16 18 C 0.06 2.27 11.43 83.51 0.95 3.22 16 19 N -0.34 -15.68 3.67 -351.85 -1.29 -16.97 16 20 C 0.27 13.91 6.26 85.63 0.54 14.44 16 21 C -0.55 -30.98 9.24 25.60 0.24 -30.74 16 22 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 23 C 0.02 1.11 5.46 84.66 0.46 1.57 16 24 N -0.92 -51.82 13.29 21.45 0.28 -51.53 16 25 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 29 N -0.34 -16.02 12.42 -54.54 -0.68 -16.70 16 30 H 0.06 0.43 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.47 7.67 -2.39 -0.02 0.46 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.67 7.97 -2.39 -0.02 0.65 16 39 H 0.07 1.03 8.02 -2.38 -0.02 1.01 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.42 5.68 7.91 -92.71 -0.73 4.95 16 42 H 0.43 12.98 8.29 -92.71 -0.77 12.21 16 43 H 0.18 5.89 5.91 -2.91 -0.02 5.87 16 44 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16 45 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.06 3.12 8.07 -2.39 -0.02 3.10 16 47 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -67.28 392.76 2.02 -65.26 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.50 Total: 23.87 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.48 Total: 15.13 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -5.89 Total: -119.93 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.10 Total: -30.11 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -67.28 2.02 -65.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440122720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.934 kcal (2) G-P(sol) polarization free energy of solvation -67.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds