Wall clock time and date at job start Tue Mar 31 2020 19:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 110.05786 * 2 1 4 4 C 1.54257 * 110.03336 * 121.42196 * 2 1 3 5 5 C 1.54893 * 104.19789 * 142.89457 * 4 2 1 6 6 C 1.54962 * 102.77705 * 322.08287 * 5 4 2 7 7 C 1.53878 * 110.03183 * 238.58725 * 2 1 3 8 8 H 1.09006 * 110.03438 * 121.38189 * 7 2 1 9 9 C 1.53004 * 110.03164 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46928 * 175.68900 * 9 7 2 11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21363 * 119.99810 * 0.02562 * 11 10 9 13 13 C 1.49342 * 120.00099 * 180.02562 * 11 10 9 14 14 O 1.21383 * 119.99611 * 0.02562 * 13 11 10 15 15 N 1.34777 * 120.00103 * 180.02562 * 13 11 10 16 16 C 1.39930 * 119.99993 * 180.27738 * 15 13 11 17 17 C 1.40462 * 125.97765 * 359.43801 * 16 15 13 18 18 C 1.35215 * 107.86720 * 179.88781 * 17 16 15 19 19 N 1.34992 * 107.87523 * 0.36814 * 18 17 16 20 20 C 1.46501 * 125.97693 * 179.72388 * 19 18 17 21 21 C 1.50702 * 109.46822 * 125.01907 * 20 19 18 22 22 H 1.07998 * 120.00149 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99565 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99927 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46934 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.46973 * 119.99607 * 25 23 21 28 28 H 1.48493 * 109.47110 * 239.99807 * 25 23 21 29 29 N 1.31275 * 125.98051 * 179.74611 * 16 15 13 30 30 H 1.09000 * 109.47222 * 181.41089 * 1 2 3 31 31 H 1.09000 * 109.47020 * 301.41553 * 1 2 3 32 32 H 1.09003 * 109.47410 * 61.41286 * 1 2 3 33 33 H 1.09000 * 110.48801 * 261.56901 * 4 2 1 34 34 H 1.08994 * 110.49116 * 24.21482 * 4 2 1 35 35 H 1.08999 * 110.75363 * 80.37341 * 5 4 2 36 36 H 1.09000 * 110.75574 * 203.55320 * 5 4 2 37 37 H 1.09001 * 110.47507 * 279.23752 * 6 5 4 38 38 H 1.08997 * 110.53208 * 156.56776 * 6 5 4 39 39 H 1.09000 * 109.46792 * 55.69804 * 9 7 2 40 40 H 1.08997 * 109.47419 * 295.69057 * 9 7 2 41 41 H 0.97000 * 119.99819 * 0.02562 * 10 9 7 42 42 H 0.97001 * 119.99727 * 359.97438 * 15 13 11 43 43 H 1.07998 * 126.06980 * 0.02562 * 17 16 15 44 44 H 1.07994 * 126.06586 * 180.13483 * 18 17 16 45 45 H 1.08997 * 109.47701 * 245.02392 * 20 19 18 46 46 H 1.09003 * 109.46397 * 5.02301 * 20 19 18 47 47 H 0.97006 * 119.99889 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2367 5 6 3.3136 -1.5008 0.7189 6 6 2.8882 -1.9406 -0.7048 7 6 2.0570 -0.7535 -1.2338 8 1 2.6860 -0.0950 -1.8330 9 6 0.8860 -1.2673 -2.0739 10 7 1.3988 -1.8919 -3.2959 11 6 0.5428 -2.4195 -4.1933 12 8 -0.6528 -2.3767 -3.9893 13 6 1.0654 -3.0567 -5.4387 14 8 2.2613 -3.0999 -5.6425 15 7 0.2094 -3.5839 -6.3364 16 6 0.6994 -4.1861 -7.5005 17 6 2.0513 -4.3005 -7.8641 18 6 2.1085 -4.9449 -9.0515 19 7 0.8438 -5.2224 -9.4336 20 6 0.4482 -5.9094 -10.6656 21 6 -0.4137 -7.0974 -10.3237 22 1 -0.6440 -7.3183 -9.2919 23 6 -0.9081 -7.9022 -11.3281 24 7 -0.6281 -7.6328 -12.5845 25 14 -1.9771 -9.3744 -10.9044 26 1 -2.1426 -9.4582 -9.4309 27 1 -3.3082 -9.2202 -11.5445 28 1 -1.3298 -10.6153 -11.4007 29 7 -0.0242 -4.7380 -8.4467 30 1 -0.3634 -1.0273 0.0253 31 1 -0.3633 0.5357 0.8770 32 1 -0.3634 0.4917 -0.9024 33 1 2.3297 -0.0538 2.0254 34 1 1.3143 -1.4661 1.5965 35 1 4.1709 -0.8291 0.6750 36 1 3.5344 -2.3660 1.3440 37 1 2.2782 -2.8428 -0.6588 38 1 3.7643 -2.1027 -1.3326 39 1 0.2349 -0.4339 -2.3376 40 1 0.3216 -2.0019 -1.4997 41 1 2.3544 -1.9264 -3.4587 42 1 -0.7462 -3.5497 -6.1733 43 1 2.8955 -3.9401 -7.2951 44 1 3.0063 -5.1903 -9.5991 45 1 -0.1135 -5.2235 -11.2998 46 1 1.3390 -6.2471 -11.1953 47 1 -0.9763 -8.1988 -13.2912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440122721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:23 Heat of formation + Delta-G solvation = -1.285141 kcal Electronic energy + Delta-G solvation = -27671.178308 eV Core-core repulsion = 23662.387508 eV Total energy + Delta-G solvation = -4008.790800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.11047 -40.33171 -39.45241 -38.32831 -35.48226 -34.52222 -33.35985 -31.93195 -31.04690 -30.27080 -29.41982 -27.14133 -26.10169 -25.39286 -24.14300 -22.77891 -21.42948 -21.09439 -20.45531 -19.86888 -19.23095 -18.08105 -17.23509 -16.64393 -16.59009 -16.38062 -16.08234 -15.54300 -15.27346 -15.04323 -14.78951 -14.33340 -14.21641 -14.11130 -13.98996 -13.60039 -13.01721 -12.91867 -12.86466 -12.52575 -12.41830 -12.30498 -11.90360 -11.61712 -11.46962 -11.32257 -11.21332 -11.12407 -11.07659 -11.03706 -10.86559 -10.82210 -10.54254 -10.28392 -10.03664 -9.57470 -9.52722 -9.48488 -8.65735 -8.23459 -7.58562 -6.26505 -4.31553 1.20536 2.06357 2.66107 3.03291 3.19480 3.21978 3.29694 3.36970 3.66246 3.83941 4.03540 4.09463 4.15900 4.30334 4.40814 4.69439 4.84253 4.85826 4.96600 4.99421 5.07899 5.08980 5.12602 5.33311 5.36345 5.42144 5.42937 5.50427 5.53995 5.66447 5.70628 5.72656 5.80149 5.90422 5.97109 5.98131 6.10066 6.31459 6.40714 6.78699 6.89837 7.01650 7.24083 7.36228 7.62416 7.68954 7.84374 7.95282 7.97243 8.53697 8.77467 9.34439 10.82316 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.001835 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.079390 B =15251.103411 C =15608.434026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.122 4.122 5 C -0.125 4.125 6 C -0.124 4.124 7 C -0.103 4.103 8 H 0.082 0.918 9 C 0.121 3.879 10 N -0.700 5.700 11 C 0.515 3.485 12 O -0.516 6.516 13 C 0.512 3.488 14 O -0.500 6.500 15 N -0.598 5.598 16 C 0.250 3.750 17 C -0.286 4.286 18 C 0.053 3.947 19 N -0.314 5.314 20 C 0.257 3.743 21 C -0.529 4.529 22 H 0.070 0.930 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.908 3.092 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.282 1.282 29 N -0.294 5.294 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.413 0.587 42 H 0.423 0.577 43 H 0.161 0.839 44 H 0.170 0.830 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.994 15.440 24.987 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.159 4.159 5 C -0.163 4.163 6 C -0.162 4.162 7 C -0.122 4.122 8 H 0.100 0.900 9 C -0.002 4.002 10 N -0.354 5.354 11 C 0.295 3.705 12 O -0.391 6.391 13 C 0.292 3.708 14 O -0.374 6.374 15 N -0.247 5.247 16 C -0.002 4.002 17 C -0.317 4.317 18 C -0.097 4.097 19 N -0.096 5.096 20 C 0.139 3.861 21 C -0.568 4.568 22 H 0.088 0.912 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.735 3.265 26 H -0.195 1.195 27 H -0.207 1.207 28 H -0.208 1.208 29 N -0.126 5.126 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.249 0.751 42 H 0.260 0.740 43 H 0.178 0.822 44 H 0.188 0.812 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.725 15.051 24.304 29.367 hybrid contribution 0.184 -0.659 0.248 0.727 sum 6.909 14.393 24.552 29.286 Atomic orbital electron populations 1.22044 0.94791 1.02401 1.02048 1.21700 0.95972 0.99275 0.93632 0.90598 1.22474 0.97439 0.99006 0.96986 1.22490 0.97698 1.00009 0.96089 1.22521 0.99618 0.97589 0.96460 1.22089 0.96100 0.97574 0.96417 0.89975 1.21880 0.96409 0.97905 0.83957 1.45768 1.11086 1.57947 1.20603 1.19878 0.86582 0.79722 0.84317 1.90794 1.14975 1.56514 1.76845 1.19943 0.86431 0.80161 0.84284 1.90704 1.14880 1.55723 1.76061 1.42002 1.11408 1.54183 1.17066 1.19019 0.92499 0.99930 0.88792 1.21512 0.95900 1.14394 0.99888 1.22581 0.90072 1.00032 0.96985 1.49170 1.02480 1.40943 1.17043 1.19807 0.97827 0.91995 0.76446 1.21292 1.31471 1.09686 0.94317 0.91187 1.24947 0.96252 0.98226 0.94645 1.69926 1.45063 1.39183 0.99113 0.86268 0.79896 0.81503 0.78823 1.19527 1.20656 1.20761 1.77412 1.16774 1.19220 0.99171 0.91995 0.92570 0.92031 0.91648 0.91331 0.91460 0.91459 0.91093 0.91227 0.90395 0.90483 0.75061 0.73951 0.82166 0.81235 0.93533 0.92360 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 7.88 37.15 0.29 -0.51 16 2 C -0.09 -0.43 3.50 -89.51 -0.31 -0.74 16 3 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 4 C -0.12 -0.58 6.36 -25.07 -0.16 -0.74 16 5 C -0.13 -0.61 6.91 -24.70 -0.17 -0.78 16 6 C -0.12 -0.68 6.05 -25.03 -0.15 -0.83 16 7 C -0.10 -0.56 2.97 -89.50 -0.27 -0.82 16 8 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 9 C 0.12 0.89 3.77 -4.04 -0.02 0.87 16 10 N -0.70 -6.35 5.39 -60.76 -0.33 -6.68 16 11 C 0.52 6.38 7.89 -11.64 -0.09 6.29 16 12 O -0.52 -7.44 16.48 5.49 0.09 -7.35 16 13 C 0.51 7.48 7.85 -11.64 -0.09 7.39 16 14 O -0.50 -7.83 13.60 5.47 0.07 -7.76 16 15 N -0.60 -9.83 5.43 -11.58 -0.06 -9.90 16 16 C 0.25 5.01 8.10 -154.55 -1.25 3.76 16 17 C -0.29 -5.44 9.60 -39.82 -0.38 -5.82 16 18 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 19 N -0.31 -7.19 3.67 -62.56 -0.23 -7.42 16 20 C 0.26 6.44 6.26 -5.19 -0.03 6.40 16 21 C -0.53 -14.65 9.24 -34.44 -0.32 -14.97 16 22 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 25 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 30 H 0.06 0.35 6.83 -51.93 -0.35 -0.01 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.33 6.63 -51.93 -0.34 -0.01 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.34 7.84 -51.93 -0.41 -0.07 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.45 7.77 -51.93 -0.40 0.04 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.60 6.47 -51.93 -0.34 0.26 16 40 H 0.08 0.61 6.88 -51.93 -0.36 0.25 16 41 H 0.41 3.27 7.80 -40.82 -0.32 2.95 16 42 H 0.42 6.40 8.29 -40.82 -0.34 6.06 16 43 H 0.16 2.85 5.91 -52.49 -0.31 2.54 16 44 H 0.17 2.62 8.06 -52.49 -0.42 2.19 16 45 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -31.61 386.22 -8.71 -40.32 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.94 Total: 5.49 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -3.25 Total: 1.94 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.51 Total: -54.82 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.16 Total: -15.10 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.61 -8.71 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440122721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.035 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds