Wall clock time and date at job start Tue Mar 31 2020 18:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47097 * 2 1 4 4 O 1.21280 * 120.00544 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99727 * 179.97438 * 3 2 1 6 6 C 1.47021 * 125.64701 * 0.02853 * 5 3 2 7 7 C 1.54330 * 107.26955 * 178.89937 * 6 5 3 8 8 C 1.55152 * 102.93965 * 337.80493 * 7 6 5 9 9 H 1.08995 * 111.00644 * 277.38446 * 8 7 6 10 10 C 1.50706 * 111.00275 * 153.57435 * 8 7 6 11 11 O 1.21292 * 120.00254 * 244.58091 * 10 8 7 12 12 N 1.34777 * 119.99762 * 64.57877 * 10 8 7 13 13 C 1.39475 * 120.00058 * 179.97438 * 12 10 8 14 14 C 1.36108 * 126.21349 * 0.03140 * 13 12 10 15 15 C 1.39762 * 107.82334 * 180.02562 * 14 13 12 16 16 C 1.50700 * 125.83226 * 179.97438 * 15 14 13 17 17 N 1.30846 * 108.32464 * 359.97438 * 15 14 13 18 18 N 1.35255 * 126.21511 * 179.71567 * 13 12 10 19 19 C 1.46505 * 126.05029 * 359.97438 * 18 13 12 20 20 C 1.50703 * 109.46962 * 89.99783 * 19 18 13 21 21 H 1.07996 * 119.99902 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99822 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99848 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47176 * 89.99816 * 24 22 20 26 26 H 1.48501 * 109.47031 * 209.99565 * 24 22 20 27 27 H 1.48499 * 109.47071 * 329.99753 * 24 22 20 28 28 C 1.47463 * 125.62778 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.47275 * 59.99488 * 1 2 3 30 30 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46856 * 300.00270 * 1 2 3 32 32 H 1.08999 * 109.46613 * 239.99810 * 2 1 3 33 33 H 1.09002 * 109.46877 * 120.00148 * 2 1 3 34 34 H 1.08999 * 109.88655 * 59.48385 * 6 5 3 35 35 H 1.09007 * 110.01291 * 298.38788 * 6 5 3 36 36 H 1.08993 * 110.71678 * 219.43798 * 7 6 5 37 37 H 1.09001 * 110.71567 * 96.17187 * 7 6 5 38 38 H 0.97004 * 120.00307 * 0.27747 * 12 10 8 39 39 H 1.08001 * 126.08741 * 359.97438 * 14 13 12 40 40 H 1.09003 * 109.46963 * 89.99882 * 16 15 14 41 41 H 1.09004 * 109.46822 * 209.98873 * 16 15 14 42 42 H 1.08998 * 109.47641 * 329.99486 * 16 15 14 43 43 H 1.09001 * 109.47262 * 209.99745 * 19 18 13 44 44 H 1.09002 * 109.46802 * 329.99849 * 19 18 13 45 45 H 0.97001 * 119.99541 * 180.02562 * 23 22 20 46 46 H 1.08998 * 110.34953 * 85.33035 * 28 5 3 47 47 H 1.08996 * 110.40608 * 322.99086 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4181 0.6489 0.0005 7 6 5.7690 1.3947 -0.0271 8 6 5.3889 2.7804 -0.6122 9 1 5.3406 2.7451 -1.7005 10 6 6.3523 3.8439 -0.1515 11 8 5.9632 4.7500 0.5547 12 7 7.6463 3.7881 -0.5243 13 6 8.5378 4.7726 -0.0984 14 6 8.2397 5.8399 0.6919 15 6 9.4134 6.5757 0.8776 16 6 9.5432 7.8400 1.6874 17 7 10.3800 5.9791 0.2282 18 7 9.8568 4.8368 -0.3909 19 6 10.6051 3.8824 -1.2127 20 6 10.5673 4.3224 -2.6536 21 1 10.0384 5.2226 -2.9296 22 6 11.2071 3.5750 -3.6196 23 7 11.8508 2.4785 -3.2834 24 14 11.1608 4.1207 -5.4055 25 1 12.3173 5.0106 -5.6813 26 1 11.2314 2.9293 -6.2891 27 1 9.8972 4.8560 -5.6658 28 6 3.9830 3.0024 0.0001 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.3255 0.0170 -0.8827 35 1 4.3498 0.0390 0.9014 36 1 6.4787 0.8830 -0.6771 37 1 6.1726 1.4987 0.9801 38 1 7.9567 3.0657 -1.0924 39 1 7.2689 6.0765 1.1017 40 1 9.7917 7.5873 2.7182 41 1 10.3325 8.4622 1.2654 42 1 8.5994 8.3849 1.6642 43 1 11.6398 3.8425 -0.8720 44 1 10.1546 2.8939 -1.1227 45 1 12.3012 1.9529 -3.9630 46 1 4.0680 3.3815 1.0184 47 1 3.4059 3.6922 -0.6156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533307517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:23 Heat of formation + Delta-G solvation = -0.455891 kcal Electronic energy + Delta-G solvation = -28638.011001 eV Core-core repulsion = 24629.256160 eV Total energy + Delta-G solvation = -4008.754841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.09121 -40.37092 -39.26327 -37.35257 -34.82970 -33.82314 -33.23322 -32.21423 -31.90535 -29.58774 -29.15210 -28.24305 -26.09881 -25.68468 -23.43624 -22.89735 -22.68593 -20.83957 -19.78509 -19.51126 -19.12816 -17.56427 -17.38135 -16.93424 -16.52668 -16.09119 -15.64037 -15.33535 -15.06426 -14.80764 -14.32663 -14.22122 -13.98787 -13.75562 -13.59947 -13.16412 -12.92567 -12.80999 -12.67051 -12.56246 -12.53196 -12.29125 -12.07394 -11.96436 -11.79354 -11.62007 -11.57569 -11.51130 -11.22622 -11.11726 -10.93626 -10.45054 -10.38348 -10.09737 -9.95092 -9.86020 -9.55296 -8.93706 -8.77068 -7.96633 -7.49368 -6.38672 -4.47213 2.14771 2.38085 2.50474 2.86709 3.05135 3.13098 3.20403 3.24652 3.54819 3.72899 3.95603 4.09684 4.20079 4.39935 4.50046 4.72960 4.73875 4.82204 4.90914 4.94797 4.95319 5.11545 5.25222 5.32975 5.41657 5.46097 5.55138 5.61336 5.64000 5.65348 5.76162 5.88651 5.97611 6.00573 6.13122 6.14542 6.22110 6.37332 6.61932 6.78002 6.99246 7.20191 7.46089 7.52808 7.57159 7.74361 7.84066 7.90697 8.21366 8.57201 8.66265 9.20761 10.68360 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.002980 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.122125 B = 9393.870368 C =11270.097533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.527 3.473 4 O -0.538 6.538 5 N -0.623 5.623 6 C 0.102 3.898 7 C -0.125 4.125 8 C -0.121 4.121 9 H 0.118 0.882 10 C 0.532 3.468 11 O -0.510 6.510 12 N -0.636 5.636 13 C 0.300 3.700 14 C -0.294 4.294 15 C 0.050 3.950 16 C -0.063 4.063 17 N -0.284 5.284 18 N -0.344 5.344 19 C 0.257 3.743 20 C -0.541 4.541 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.906 3.094 25 H -0.276 1.276 26 H -0.283 1.283 27 H -0.272 1.272 28 C 0.127 3.873 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.417 0.583 39 H 0.161 0.839 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.269 0.731 46 H 0.086 0.914 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.268 -7.958 6.622 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.316 3.684 4 O -0.415 6.415 5 N -0.358 5.358 6 C -0.021 4.021 7 C -0.164 4.164 8 C -0.143 4.143 9 H 0.136 0.864 10 C 0.317 3.683 11 O -0.384 6.384 12 N -0.282 5.282 13 C 0.077 3.923 14 C -0.326 4.326 15 C -0.114 4.114 16 C -0.121 4.121 17 N -0.110 5.110 18 N -0.129 5.129 19 C 0.139 3.861 20 C -0.579 4.579 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.528 5.528 24 Si 0.732 3.268 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.197 1.197 28 C 0.004 3.996 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.253 0.747 39 H 0.179 0.821 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.682 -7.113 6.661 17.622 hybrid contribution -0.264 -0.420 -1.371 1.458 sum -14.946 -7.533 5.289 17.553 Atomic orbital electron populations 1.21547 0.92939 1.01619 1.03448 1.21620 0.98574 0.93402 1.04327 1.20492 0.80134 0.92029 0.75763 1.90725 1.54244 1.46782 1.49759 1.48565 1.05292 1.08035 1.73925 1.22062 0.86273 0.91332 1.02414 1.22722 0.96977 0.93458 1.03197 1.22433 0.94502 0.94300 1.03052 0.86364 1.20058 0.81397 0.86500 0.80335 1.90667 1.76806 1.34778 1.36104 1.42737 1.07801 1.26825 1.50872 1.17919 0.83459 0.92236 0.98648 1.21278 1.00876 0.98507 1.11967 1.22039 0.91815 0.98211 0.99357 1.20023 1.02385 0.91952 0.97767 1.77365 1.21657 0.97454 1.14498 1.49360 1.04056 1.20530 1.39004 1.19619 0.92918 0.84681 0.88877 1.21343 1.35275 1.10637 0.90652 0.91715 1.24931 0.94364 0.94580 0.99765 1.69917 1.33295 1.14900 1.34657 0.86361 0.78949 0.78298 0.83152 1.20180 1.20828 1.19673 1.22007 0.90287 0.84718 1.02557 0.91929 0.92004 0.91951 0.88877 0.88929 0.90642 0.90698 0.88374 0.89485 0.74655 0.82142 0.91362 0.91489 0.91116 0.92543 0.93831 0.92146 0.89616 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.14 -0.95 5.61 -27.88 -0.16 -1.10 16 3 C 0.53 5.74 7.85 -10.98 -0.09 5.66 16 4 O -0.54 -8.14 16.24 5.56 0.09 -8.05 16 5 N -0.62 -6.06 3.33 -170.47 -0.57 -6.63 16 6 C 0.10 0.66 6.49 -3.06 -0.02 0.64 16 7 C -0.13 -0.94 6.40 -24.90 -0.16 -1.10 16 8 C -0.12 -1.22 3.43 -89.61 -0.31 -1.53 16 9 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 10 C 0.53 7.64 7.11 -10.98 -0.08 7.56 16 11 O -0.51 -8.80 12.89 5.55 0.07 -8.73 16 12 N -0.64 -10.27 5.41 -11.46 -0.06 -10.33 16 13 C 0.30 6.09 7.66 -153.16 -1.17 4.91 16 14 C -0.29 -5.90 9.58 -39.78 -0.38 -6.28 16 15 C 0.05 1.00 7.21 -82.44 -0.59 0.41 16 16 C -0.06 -0.92 10.44 36.01 0.38 -0.55 16 17 N -0.28 -6.52 12.56 33.65 0.42 -6.09 16 18 N -0.34 -7.84 3.60 -61.57 -0.22 -8.06 16 19 C 0.26 6.20 6.00 -5.19 -0.03 6.17 16 20 C -0.54 -14.15 9.39 -34.44 -0.32 -14.47 16 21 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 22 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -23.64 13.29 55.43 0.74 -22.90 16 24 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.13 1.44 6.00 -2.49 -0.01 1.42 16 29 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.52 8.10 -51.92 -0.42 0.10 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.69 8.03 -51.93 -0.42 0.28 16 38 H 0.42 6.10 7.97 -40.82 -0.33 5.78 16 39 H 0.16 3.14 5.83 -52.49 -0.31 2.83 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.04 1.00 7.51 -51.93 -0.39 0.61 16 45 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 46 H 0.09 1.09 7.45 -51.93 -0.39 0.70 16 47 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -33.51 392.72 -8.62 -42.12 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.28 Total: 4.80 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.71 Total: 2.75 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.31 Total: -54.02 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.16 Total: -16.78 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.51 -8.62 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533307517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.669 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds