Wall clock time and date at job start Tue Mar 31 2020 18:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47097 * 2 1 4 4 O 1.21280 * 120.00544 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99727 * 179.97438 * 3 2 1 6 6 C 1.47021 * 125.64701 * 0.02853 * 5 3 2 7 7 C 1.54330 * 107.26955 * 178.89937 * 6 5 3 8 8 C 1.55152 * 102.93965 * 337.80493 * 7 6 5 9 9 H 1.08995 * 111.00644 * 277.38446 * 8 7 6 10 10 C 1.50706 * 111.00275 * 153.57435 * 8 7 6 11 11 O 1.21292 * 120.00254 * 244.58091 * 10 8 7 12 12 N 1.34777 * 119.99762 * 64.57877 * 10 8 7 13 13 C 1.39475 * 120.00058 * 179.97438 * 12 10 8 14 14 C 1.36108 * 126.21349 * 0.03140 * 13 12 10 15 15 C 1.39762 * 107.82334 * 180.02562 * 14 13 12 16 16 C 1.50700 * 125.83226 * 179.97438 * 15 14 13 17 17 N 1.30846 * 108.32464 * 359.97438 * 15 14 13 18 18 N 1.35255 * 126.21511 * 179.71567 * 13 12 10 19 19 C 1.46505 * 126.05029 * 359.97438 * 18 13 12 20 20 C 1.50703 * 109.46962 * 89.99783 * 19 18 13 21 21 H 1.07996 * 119.99902 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99822 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99848 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47176 * 89.99816 * 24 22 20 26 26 H 1.48501 * 109.47031 * 209.99565 * 24 22 20 27 27 H 1.48499 * 109.47071 * 329.99753 * 24 22 20 28 28 C 1.47463 * 125.62778 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.47275 * 59.99488 * 1 2 3 30 30 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46856 * 300.00270 * 1 2 3 32 32 H 1.08999 * 109.46613 * 239.99810 * 2 1 3 33 33 H 1.09002 * 109.46877 * 120.00148 * 2 1 3 34 34 H 1.08999 * 109.88655 * 59.48385 * 6 5 3 35 35 H 1.09007 * 110.01291 * 298.38788 * 6 5 3 36 36 H 1.08993 * 110.71678 * 219.43798 * 7 6 5 37 37 H 1.09001 * 110.71567 * 96.17187 * 7 6 5 38 38 H 0.97004 * 120.00307 * 0.27747 * 12 10 8 39 39 H 1.08001 * 126.08741 * 359.97438 * 14 13 12 40 40 H 1.09003 * 109.46963 * 89.99882 * 16 15 14 41 41 H 1.09004 * 109.46822 * 209.98873 * 16 15 14 42 42 H 1.08998 * 109.47641 * 329.99486 * 16 15 14 43 43 H 1.09001 * 109.47262 * 209.99745 * 19 18 13 44 44 H 1.09002 * 109.46802 * 329.99849 * 19 18 13 45 45 H 0.97001 * 119.99541 * 180.02562 * 23 22 20 46 46 H 1.08998 * 110.34953 * 85.33035 * 28 5 3 47 47 H 1.08996 * 110.40608 * 322.99086 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4181 0.6489 0.0005 7 6 5.7690 1.3947 -0.0271 8 6 5.3889 2.7804 -0.6122 9 1 5.3406 2.7451 -1.7005 10 6 6.3523 3.8439 -0.1515 11 8 5.9632 4.7500 0.5547 12 7 7.6463 3.7881 -0.5243 13 6 8.5378 4.7726 -0.0984 14 6 8.2397 5.8399 0.6919 15 6 9.4134 6.5757 0.8776 16 6 9.5432 7.8400 1.6874 17 7 10.3800 5.9791 0.2282 18 7 9.8568 4.8368 -0.3909 19 6 10.6051 3.8824 -1.2127 20 6 10.5673 4.3224 -2.6536 21 1 10.0384 5.2226 -2.9296 22 6 11.2071 3.5750 -3.6196 23 7 11.8508 2.4785 -3.2834 24 14 11.1608 4.1207 -5.4055 25 1 12.3173 5.0106 -5.6813 26 1 11.2314 2.9293 -6.2891 27 1 9.8972 4.8560 -5.6658 28 6 3.9830 3.0024 0.0001 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.3255 0.0170 -0.8827 35 1 4.3498 0.0390 0.9014 36 1 6.4787 0.8830 -0.6771 37 1 6.1726 1.4987 0.9801 38 1 7.9567 3.0657 -1.0924 39 1 7.2689 6.0765 1.1017 40 1 9.7917 7.5873 2.7182 41 1 10.3325 8.4622 1.2654 42 1 8.5994 8.3849 1.6642 43 1 11.6398 3.8425 -0.8720 44 1 10.1546 2.8939 -1.1227 45 1 12.3012 1.9529 -3.9630 46 1 4.0680 3.3815 1.0184 47 1 3.4059 3.6922 -0.6156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533307517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:22 Heat of formation + Delta-G solvation = -21.990199 kcal Electronic energy + Delta-G solvation = -28638.944799 eV Core-core repulsion = 24629.256160 eV Total energy + Delta-G solvation = -4009.688639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.50088 -41.41023 -40.42455 -38.25624 -36.30425 -35.61293 -33.95510 -33.82241 -32.78887 -30.78855 -30.29756 -29.70179 -27.81652 -26.55632 -24.82393 -24.12223 -23.49936 -22.06250 -21.26310 -20.57762 -20.10358 -18.88880 -18.58530 -18.24373 -18.07049 -17.06646 -16.72786 -16.56684 -16.39068 -16.12053 -15.71574 -15.47398 -15.06153 -14.58104 -14.53044 -14.42833 -14.40998 -14.04647 -13.90305 -13.60499 -13.53779 -13.38869 -13.14543 -13.11144 -12.90444 -12.88864 -12.72117 -12.58284 -12.39795 -12.28880 -12.06604 -11.93758 -11.86960 -11.68841 -11.44543 -10.95686 -10.91698 -10.75908 -9.72826 -9.63798 -9.08005 -8.36164 -6.53042 0.75648 1.26528 1.36234 1.39557 1.48911 1.59552 1.60608 1.90388 2.03880 2.24340 2.36641 2.94558 3.13989 3.30526 3.63673 3.75144 3.82966 4.02612 4.15795 4.21802 4.23750 4.25885 4.30581 4.57449 4.62101 4.70273 4.71499 4.77152 4.81947 4.85540 4.88289 4.88596 4.93851 4.95154 5.00403 5.04724 5.10529 5.19866 5.21149 5.24070 5.37544 5.51751 5.77674 5.94938 6.14423 6.26450 6.46825 6.57388 6.91338 7.02650 7.11480 7.19040 8.70155 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.002980 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.122125 B = 9393.870368 C =11270.097533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.516 3.484 4 O -0.594 6.594 5 N -0.621 5.621 6 C 0.101 3.899 7 C -0.121 4.121 8 C -0.108 4.108 9 H 0.138 0.862 10 C 0.534 3.466 11 O -0.539 6.539 12 N -0.632 5.632 13 C 0.300 3.700 14 C -0.309 4.309 15 C 0.057 3.943 16 C -0.061 4.061 17 N -0.331 5.331 18 N -0.365 5.365 19 C 0.272 3.728 20 C -0.556 4.556 21 H 0.045 0.955 22 C 0.031 3.969 23 N -0.911 5.911 24 Si 0.965 3.035 25 H -0.279 1.279 26 H -0.267 1.267 27 H -0.272 1.272 28 C 0.127 3.873 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.424 0.576 39 H 0.166 0.834 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.027 0.973 44 H 0.054 0.946 45 H 0.275 0.725 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 -9.981 5.996 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.308 3.692 4 O -0.474 6.474 5 N -0.355 5.355 6 C -0.020 4.020 7 C -0.159 4.159 8 C -0.130 4.130 9 H 0.156 0.844 10 C 0.322 3.678 11 O -0.415 6.415 12 N -0.280 5.280 13 C 0.078 3.922 14 C -0.341 4.341 15 C -0.108 4.108 16 C -0.120 4.120 17 N -0.156 5.156 18 N -0.151 5.151 19 C 0.154 3.846 20 C -0.594 4.594 21 H 0.063 0.937 22 C -0.171 4.171 23 N -0.549 5.549 24 Si 0.790 3.210 25 H -0.205 1.205 26 H -0.192 1.192 27 H -0.197 1.197 28 C 0.003 3.997 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.262 0.738 39 H 0.183 0.817 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.248 -9.184 6.040 18.796 hybrid contribution -0.123 0.254 -1.090 1.126 sum -15.371 -8.929 4.950 18.453 Atomic orbital electron populations 1.21562 0.93619 1.02740 1.01738 1.21693 0.97899 0.90584 1.06779 1.21381 0.79931 0.93320 0.74581 1.90700 1.55669 1.48724 1.52350 1.48669 1.05806 1.07983 1.73055 1.22337 0.84107 0.90587 1.05016 1.22810 0.98292 0.91586 1.03181 1.22390 0.92267 0.94350 1.03995 0.84421 1.20865 0.80979 0.86798 0.79202 1.90647 1.77103 1.36287 1.37434 1.42893 1.07826 1.26224 1.51019 1.18287 0.83086 0.92985 0.97869 1.21470 1.01173 0.98889 1.12555 1.22865 0.90956 0.98960 0.98015 1.20218 1.03849 0.89861 0.98026 1.77313 1.23362 0.98455 1.16449 1.49183 1.04910 1.20932 1.40053 1.19252 0.91684 0.85536 0.88176 1.21390 1.35800 1.10224 0.91973 0.93680 1.25608 0.93695 0.94490 1.03289 1.69977 1.33414 1.15478 1.36033 0.85448 0.78526 0.78242 0.78815 1.20515 1.19180 1.19699 1.21810 0.90948 0.85776 1.01119 0.93676 0.89320 0.93759 0.86124 0.86326 0.87717 0.88397 0.86085 0.90050 0.73772 0.81695 0.89206 0.90907 0.89005 0.95532 0.92848 0.91592 0.91569 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 71.98 0.66 -1.14 16 2 C -0.13 -1.39 5.61 29.85 0.17 -1.22 16 3 C 0.52 10.71 7.85 87.66 0.69 11.40 16 4 O -0.59 -18.48 16.24 -3.03 -0.05 -18.53 16 5 N -0.62 -11.03 3.33 -811.62 -2.70 -13.73 16 6 C 0.10 0.92 6.49 86.73 0.56 1.48 16 7 C -0.12 -1.45 6.40 31.78 0.20 -1.25 16 8 C -0.11 -2.04 3.43 -10.14 -0.03 -2.07 16 9 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 10 C 0.53 15.15 7.11 87.66 0.62 15.78 16 11 O -0.54 -18.88 12.89 -3.07 -0.04 -18.92 16 12 N -0.63 -20.23 5.41 -308.56 -1.67 -21.90 16 13 C 0.30 12.34 7.66 131.32 1.01 13.35 16 14 C -0.31 -12.47 9.58 22.14 0.21 -12.26 16 15 C 0.06 2.27 7.21 43.07 0.31 2.58 16 16 C -0.06 -1.72 10.44 71.24 0.74 -0.98 16 17 N -0.33 -15.49 12.56 -47.45 -0.60 -16.09 16 18 N -0.37 -17.05 3.60 -348.70 -1.26 -18.30 16 19 C 0.27 13.48 6.00 85.63 0.51 13.99 16 20 C -0.56 -29.48 9.39 25.60 0.24 -29.24 16 21 H 0.04 2.53 7.81 -2.91 -0.02 2.50 16 22 C 0.03 1.60 5.46 84.65 0.46 2.07 16 23 N -0.91 -48.01 13.29 21.45 0.28 -47.73 16 24 Si 0.97 40.97 29.54 68.60 2.03 42.99 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 C 0.13 2.87 6.00 86.86 0.52 3.39 16 29 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.04 0.72 8.10 -2.38 -0.02 0.70 16 32 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.11 8.03 -2.39 -0.02 1.09 16 38 H 0.42 12.09 7.97 -92.71 -0.74 11.35 16 39 H 0.17 6.49 5.83 -2.91 -0.02 6.47 16 40 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 2.49 7.51 -2.39 -0.02 2.47 16 45 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 46 H 0.07 1.74 7.45 -2.39 -0.02 1.73 16 47 H 0.07 1.75 8.04 -2.39 -0.02 1.73 16 Total: -1.00 -76.20 392.72 3.13 -73.07 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.25 Total: 23.25 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 6.88 Total: 15.89 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -5.94 Total: -117.75 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.09 Total: -37.45 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -76.20 3.13 -73.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533307517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.083 kcal (2) G-P(sol) polarization free energy of solvation -76.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds