Wall clock time and date at job start Tue Mar 31 2020 19:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99982 * 2 1 3 5 5 C 1.53002 * 109.46817 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 9 9 N 1.46500 * 109.47473 * 180.02562 * 7 6 5 10 10 C 1.34780 * 119.99910 * 85.00011 * 9 7 6 11 11 O 1.21367 * 119.99824 * 359.97438 * 10 9 7 12 12 C 1.49305 * 119.99973 * 180.02562 * 10 9 7 13 13 O 1.21400 * 120.00031 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99664 * 179.97438 * 12 10 9 15 15 C 1.40295 * 119.99453 * 180.02562 * 14 12 10 16 16 C 1.40718 * 126.10384 * 359.69282 * 15 14 12 17 17 N 1.30875 * 108.37768 * 179.85345 * 16 15 14 18 18 N 1.40064 * 108.43611 * 0.40290 * 17 16 15 19 19 C 1.37297 * 126.05668 * 179.73631 * 18 17 16 20 20 H 1.07999 * 120.00085 * 180.02562 * 19 18 17 21 21 C 1.39007 * 119.99848 * 0.02562 * 19 18 17 22 22 N 1.31275 * 120.00377 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99825 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46800 * 60.00115 * 23 21 19 25 25 H 1.48494 * 109.47067 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47126 * 300.00288 * 23 21 19 27 27 C 1.35791 * 126.09799 * 180.02562 * 15 14 12 28 28 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 29 29 H 1.09002 * 109.46716 * 60.00091 * 28 7 6 30 30 C 1.53002 * 109.47628 * 180.02562 * 28 7 6 31 31 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 33 33 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 34 34 H 1.08993 * 109.47194 * 59.99677 * 4 2 1 35 35 H 1.09002 * 109.46695 * 299.99691 * 4 2 1 36 36 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 37 37 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 38 38 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 39 39 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 40 40 H 0.96994 * 119.99975 * 265.00388 * 9 7 6 41 41 H 0.96994 * 120.00425 * 0.02562 * 14 12 10 42 42 H 1.07995 * 125.81038 * 359.97438 * 16 15 14 43 43 H 0.96998 * 120.00823 * 179.97438 * 22 21 19 44 44 H 1.08004 * 126.25137 * 359.93483 * 27 15 14 45 45 H 1.09001 * 109.47142 * 180.02562 * 30 28 7 46 46 H 1.08996 * 109.46698 * 300.00222 * 30 28 7 47 47 H 1.09002 * 109.46838 * 59.99718 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7222 1.2496 8 1 3.9332 0.3054 1.2498 9 7 4.0578 -1.4127 2.4459 10 6 5.2798 -1.1268 2.9374 11 8 5.9758 -0.2977 2.3887 12 6 5.7776 -1.8310 4.1562 13 8 5.0816 -2.6607 4.7047 14 7 6.9998 -1.5455 4.6473 15 6 7.4678 -2.2076 5.7923 16 6 6.7705 -3.1824 6.5296 17 7 7.5289 -3.5685 7.5239 18 7 8.7316 -2.8528 7.4675 19 6 9.7837 -2.9705 8.3416 20 1 10.6690 -2.3669 8.2055 21 6 9.7096 -3.8664 9.4018 22 7 8.6338 -4.6004 9.5670 23 14 11.1414 -4.0271 10.5907 24 1 11.3911 -2.7173 11.2446 25 1 10.8153 -5.0425 11.6240 26 1 12.3563 -4.4493 9.8484 27 6 8.6720 -2.0175 6.3903 28 6 2.0395 -0.7215 1.2493 29 1 1.6758 -1.7491 1.2491 30 6 1.5294 0.0003 2.4982 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6767 -0.2075 -2.1392 35 1 1.6767 -1.7489 -1.2491 36 1 3.9337 0.3057 -1.2486 37 1 3.9334 -1.2360 -2.1386 38 1 3.7158 -2.4710 0.0002 39 1 5.1695 -1.4434 0.0009 40 1 3.5017 -2.0757 2.8841 41 1 7.5558 -0.8823 4.2093 42 1 5.7791 -3.5507 6.3111 43 1 8.5822 -5.2259 10.3066 44 1 9.4424 -1.3312 6.0710 45 1 0.4394 0.0002 2.4982 46 1 1.8924 -0.5135 3.3884 47 1 1.8932 1.0278 2.4980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746344695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:22 Heat of formation + Delta-G solvation = -9.893384 kcal Electronic energy + Delta-G solvation = -28450.631799 eV Core-core repulsion = 24441.467717 eV Total energy + Delta-G solvation = -4009.164081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74319 -39.85486 -39.02351 -37.74982 -35.03536 -34.11183 -33.37420 -33.15415 -30.89165 -30.31683 -28.10431 -27.46219 -26.01908 -25.30145 -23.99227 -21.75947 -21.36538 -20.94199 -20.58301 -19.83680 -19.43498 -18.14210 -17.43674 -16.46248 -15.66221 -15.57587 -15.43835 -15.18264 -14.98580 -14.88624 -14.54309 -14.44594 -14.01491 -13.71654 -13.59866 -13.15276 -13.05648 -12.97853 -12.80019 -12.41993 -12.15591 -12.05220 -11.80908 -11.73529 -11.57523 -11.38941 -11.27183 -11.22600 -11.15951 -10.90756 -10.75720 -10.59526 -10.57939 -10.38746 -10.28271 -9.22907 -9.20344 -9.09560 -8.87328 -8.12934 -6.77703 -6.60292 -4.27719 1.67619 2.61010 2.94464 3.03557 3.07286 3.33859 3.72171 3.75554 3.96429 4.24679 4.34552 4.38069 4.45341 4.61788 4.67328 4.81202 4.98185 4.99649 5.05099 5.09012 5.12681 5.14234 5.24222 5.32083 5.41854 5.49310 5.60374 5.64665 5.72223 5.74798 5.84104 5.87327 5.94189 5.98907 6.07737 6.16159 6.20174 6.31625 6.36213 6.76231 6.88631 6.92803 7.16383 7.25740 7.77237 7.87678 8.11690 8.18653 8.49360 8.69825 9.31265 9.59922 10.35450 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.036010 B = 0.001991 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.377081 B =14062.841600 C =14439.870580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.132 4.132 7 C 0.150 3.850 8 H 0.090 0.910 9 N -0.699 5.699 10 C 0.516 3.484 11 O -0.529 6.529 12 C 0.483 3.517 13 O -0.523 6.523 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.078 4.078 28 C -0.093 4.093 29 H 0.078 0.922 30 C -0.153 4.153 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.412 0.588 41 H 0.409 0.591 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.149 0.851 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.380 8.118 -18.078 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.170 4.170 7 C 0.045 3.955 8 H 0.109 0.891 9 N -0.352 5.352 10 C 0.298 3.702 11 O -0.405 6.405 12 C 0.263 3.737 13 O -0.401 6.401 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 C -0.112 4.112 29 H 0.096 0.904 30 C -0.210 4.210 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.248 0.752 41 H 0.244 0.756 42 H 0.194 0.806 43 H 0.087 0.913 44 H 0.166 0.834 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.373 7.172 -16.896 22.136 hybrid contribution 0.666 0.524 -0.266 0.888 sum -11.707 7.696 -17.162 22.154 Atomic orbital electron populations 1.21883 0.94903 1.01964 1.01843 1.21116 0.95703 0.99665 0.93722 0.90880 1.21646 0.95525 1.00826 0.97415 1.21485 0.95458 1.01018 0.97449 1.21952 1.01542 0.99693 0.93856 1.21096 0.93335 0.97400 0.83623 0.89150 1.45794 1.17150 1.43089 1.29158 1.20282 0.82289 0.82711 0.84964 1.90724 1.55995 1.33271 1.60500 1.19691 0.83124 0.85075 0.85761 1.90651 1.56135 1.33554 1.59764 1.42152 1.15483 1.39033 1.25955 1.17255 0.97184 1.07618 0.95446 1.24141 1.01267 0.99401 0.95440 1.78261 0.91870 1.18292 1.20718 1.44555 1.10728 1.20573 1.14637 1.19876 0.94536 1.24717 1.06303 0.86485 1.25664 0.98232 0.95143 0.98099 1.70191 1.25303 1.17105 1.26810 0.85871 0.80016 0.78886 0.79263 1.19090 1.20097 1.19099 1.21306 0.99368 1.05793 0.96446 1.21437 0.93411 1.00726 0.95631 0.90404 1.21921 1.01195 1.00697 0.97176 0.92624 0.92189 0.92700 0.91826 0.91807 0.91695 0.91638 0.91542 0.91157 0.75156 0.75617 0.80573 0.91297 0.83361 0.92017 0.92139 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.84 37.16 0.33 -0.51 16 2 C -0.08 -0.54 2.25 -90.62 -0.20 -0.74 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.12 -0.72 5.20 -26.73 -0.14 -0.86 16 5 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 6 C -0.13 -1.21 5.49 -26.73 -0.15 -1.35 16 7 C 0.15 1.45 1.90 -67.93 -0.13 1.32 16 8 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 9 N -0.70 -8.26 4.38 -54.28 -0.24 -8.50 16 10 C 0.52 7.80 7.85 -11.65 -0.09 7.71 16 11 O -0.53 -8.70 16.14 5.48 0.09 -8.61 16 12 C 0.48 8.76 7.85 -11.65 -0.09 8.66 16 13 O -0.52 -10.58 13.62 5.45 0.07 -10.50 16 14 N -0.58 -11.09 5.45 -10.46 -0.06 -11.14 16 15 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 16 C -0.03 -0.70 10.84 -17.02 -0.18 -0.88 16 17 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 18 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 19 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 20 H 0.12 2.73 7.83 -52.49 -0.41 2.31 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.20 11.81 55.50 0.66 -20.55 16 23 Si 0.94 18.72 29.55 -169.99 -5.02 13.69 16 24 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 27 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 28 C -0.09 -0.70 1.83 -90.62 -0.17 -0.87 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 C -0.15 -1.21 8.68 37.16 0.32 -0.89 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.41 4.58 7.86 -40.82 -0.32 4.26 16 41 H 0.41 6.72 8.29 -40.82 -0.34 6.38 16 42 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 43 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 45 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 46 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -31.77 380.90 -7.19 -38.96 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -7.04 Total: 13.00 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.67 Total: -1.11 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.64 Total: -51.17 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.16 Total: -19.11 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.77 -7.19 -38.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746344695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.069 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds