Wall clock time and date at job start Tue Mar 31 2020 19:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99982 * 2 1 3 5 5 C 1.53002 * 109.46817 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 9 9 N 1.46500 * 109.47473 * 180.02562 * 7 6 5 10 10 C 1.34780 * 119.99910 * 85.00011 * 9 7 6 11 11 O 1.21367 * 119.99824 * 359.97438 * 10 9 7 12 12 C 1.49305 * 119.99973 * 180.02562 * 10 9 7 13 13 O 1.21400 * 120.00031 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99664 * 179.97438 * 12 10 9 15 15 C 1.40295 * 119.99453 * 180.02562 * 14 12 10 16 16 C 1.40718 * 126.10384 * 359.69282 * 15 14 12 17 17 N 1.30875 * 108.37768 * 179.85345 * 16 15 14 18 18 N 1.40064 * 108.43611 * 0.40290 * 17 16 15 19 19 C 1.37297 * 126.05668 * 179.73631 * 18 17 16 20 20 H 1.07999 * 120.00085 * 180.02562 * 19 18 17 21 21 C 1.39007 * 119.99848 * 0.02562 * 19 18 17 22 22 N 1.31275 * 120.00377 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99825 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46800 * 60.00115 * 23 21 19 25 25 H 1.48494 * 109.47067 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47126 * 300.00288 * 23 21 19 27 27 C 1.35791 * 126.09799 * 180.02562 * 15 14 12 28 28 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 29 29 H 1.09002 * 109.46716 * 60.00091 * 28 7 6 30 30 C 1.53002 * 109.47628 * 180.02562 * 28 7 6 31 31 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 33 33 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 34 34 H 1.08993 * 109.47194 * 59.99677 * 4 2 1 35 35 H 1.09002 * 109.46695 * 299.99691 * 4 2 1 36 36 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 37 37 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 38 38 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 39 39 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 40 40 H 0.96994 * 119.99975 * 265.00388 * 9 7 6 41 41 H 0.96994 * 120.00425 * 0.02562 * 14 12 10 42 42 H 1.07995 * 125.81038 * 359.97438 * 16 15 14 43 43 H 0.96998 * 120.00823 * 179.97438 * 22 21 19 44 44 H 1.08004 * 126.25137 * 359.93483 * 27 15 14 45 45 H 1.09001 * 109.47142 * 180.02562 * 30 28 7 46 46 H 1.08996 * 109.46698 * 300.00222 * 30 28 7 47 47 H 1.09002 * 109.46838 * 59.99718 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7222 1.2496 8 1 3.9332 0.3054 1.2498 9 7 4.0578 -1.4127 2.4459 10 6 5.2798 -1.1268 2.9374 11 8 5.9758 -0.2977 2.3887 12 6 5.7776 -1.8310 4.1562 13 8 5.0816 -2.6607 4.7047 14 7 6.9998 -1.5455 4.6473 15 6 7.4678 -2.2076 5.7923 16 6 6.7705 -3.1824 6.5296 17 7 7.5289 -3.5685 7.5239 18 7 8.7316 -2.8528 7.4675 19 6 9.7837 -2.9705 8.3416 20 1 10.6690 -2.3669 8.2055 21 6 9.7096 -3.8664 9.4018 22 7 8.6338 -4.6004 9.5670 23 14 11.1414 -4.0271 10.5907 24 1 11.3911 -2.7173 11.2446 25 1 10.8153 -5.0425 11.6240 26 1 12.3563 -4.4493 9.8484 27 6 8.6720 -2.0175 6.3903 28 6 2.0395 -0.7215 1.2493 29 1 1.6758 -1.7491 1.2491 30 6 1.5294 0.0003 2.4982 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6767 -0.2075 -2.1392 35 1 1.6767 -1.7489 -1.2491 36 1 3.9337 0.3057 -1.2486 37 1 3.9334 -1.2360 -2.1386 38 1 3.7158 -2.4710 0.0002 39 1 5.1695 -1.4434 0.0009 40 1 3.5017 -2.0757 2.8841 41 1 7.5558 -0.8823 4.2093 42 1 5.7791 -3.5507 6.3111 43 1 8.5822 -5.2259 10.3066 44 1 9.4424 -1.3312 6.0710 45 1 0.4394 0.0002 2.4982 46 1 1.8924 -0.5135 3.3884 47 1 1.8932 1.0278 2.4980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746344695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:20 Heat of formation + Delta-G solvation = -30.568353 kcal Electronic energy + Delta-G solvation = -28451.528332 eV Core-core repulsion = 24441.467717 eV Total energy + Delta-G solvation = -4010.060615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.09799 -41.38207 -40.23451 -39.09009 -36.36215 -35.53744 -34.90160 -33.99683 -32.30770 -31.67836 -29.89600 -28.20824 -27.19906 -26.53738 -25.38054 -23.02055 -22.52891 -22.07034 -21.55456 -21.31000 -20.70052 -19.57837 -19.11782 -17.70372 -17.45444 -16.94303 -16.79783 -16.62159 -15.78005 -15.75736 -15.54032 -15.47989 -15.31345 -15.08709 -14.88422 -14.83509 -14.54101 -13.75553 -13.54325 -13.50457 -13.38824 -13.03756 -12.95834 -12.88918 -12.75196 -12.62651 -12.51160 -12.43846 -12.13517 -12.00167 -11.96832 -11.76171 -11.34315 -11.26322 -11.06606 -11.05695 -10.87884 -10.53399 -10.19303 -10.14642 -8.63134 -8.49184 -6.27129 0.28415 1.29970 1.30358 1.41919 1.56983 1.72651 2.03902 2.12064 2.52908 2.57466 2.92760 3.07197 3.50518 3.58210 3.73127 3.85684 4.07643 4.17107 4.37154 4.38992 4.43139 4.48504 4.50440 4.51655 4.68945 4.71966 4.84614 4.94922 4.96686 4.97429 4.98390 5.08904 5.09567 5.12583 5.18800 5.20995 5.26894 5.29850 5.31650 5.37531 5.43517 5.53095 5.62341 5.89791 6.01923 6.24737 6.48383 6.66825 6.81050 7.06622 7.40546 7.62055 8.49814 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.036010 B = 0.001991 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.377081 B =14062.841600 C =14439.870580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.129 4.129 7 C 0.148 3.852 8 H 0.079 0.921 9 N -0.682 5.682 10 C 0.525 3.475 11 O -0.541 6.541 12 C 0.485 3.515 13 O -0.543 6.543 14 N -0.583 5.583 15 C -0.057 4.057 16 C -0.048 4.048 17 N -0.308 5.308 18 N -0.163 5.163 19 C -0.354 4.354 20 H 0.142 0.858 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.253 1.253 25 H -0.277 1.277 26 H -0.254 1.254 27 C -0.076 4.076 28 C -0.086 4.086 29 H 0.085 0.915 30 C -0.152 4.152 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.417 0.583 41 H 0.423 0.577 42 H 0.176 0.824 43 H 0.278 0.722 44 H 0.188 0.812 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.368 9.272 -19.581 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.168 4.168 7 C 0.045 3.955 8 H 0.097 0.903 9 N -0.334 5.334 10 C 0.306 3.694 11 O -0.418 6.418 12 C 0.267 3.733 13 O -0.421 6.421 14 N -0.227 5.227 15 C -0.163 4.163 16 C -0.224 4.224 17 N -0.139 5.139 18 N 0.069 4.931 19 C -0.485 4.485 20 H 0.159 0.841 21 C -0.218 4.218 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.177 1.177 25 H -0.202 1.202 26 H -0.178 1.178 27 C -0.226 4.226 28 C -0.105 4.105 29 H 0.103 0.897 30 C -0.209 4.209 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.254 0.746 41 H 0.260 0.740 42 H 0.192 0.808 43 H 0.088 0.912 44 H 0.205 0.795 45 H 0.094 0.906 46 H 0.065 0.935 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.393 8.352 -18.453 23.746 hybrid contribution 0.531 0.226 0.038 0.578 sum -11.862 8.578 -18.415 23.524 Atomic orbital electron populations 1.21861 0.93926 1.02287 1.02283 1.21102 0.96422 0.99332 0.93054 0.91116 1.21630 0.94452 1.01221 0.97727 1.21472 0.96377 1.00640 0.96592 1.21923 1.00228 1.00217 0.94419 1.21304 0.94908 0.96518 0.82761 0.90271 1.45837 1.15776 1.42492 1.29319 1.19652 0.83239 0.82554 0.83998 1.90729 1.56619 1.33895 1.60603 1.20326 0.82446 0.84375 0.86176 1.90641 1.56603 1.34349 1.60537 1.42093 1.16203 1.39359 1.25092 1.17297 0.96605 1.06455 0.95942 1.24244 1.01439 1.00681 0.96010 1.78157 0.93293 1.20136 1.22342 1.44837 1.10703 1.21503 1.16018 1.20622 0.95219 1.25774 1.06863 0.84099 1.26893 1.01126 0.94063 0.99677 1.70364 1.28092 1.18410 1.27964 0.84641 0.76030 0.79169 0.76315 1.17742 1.20179 1.17765 1.22000 1.00230 1.05218 0.95197 1.21420 0.91450 1.01379 0.96278 0.89669 1.21922 1.02133 1.00226 0.96664 0.92346 0.92183 0.91900 0.90574 0.91396 0.91940 0.90827 0.91034 0.93259 0.74582 0.73966 0.80755 0.91208 0.79529 0.90599 0.93529 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.84 71.98 0.64 -0.63 16 2 C -0.08 -0.85 2.25 -10.79 -0.02 -0.88 16 3 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.11 -1.11 5.20 30.59 0.16 -0.95 16 5 C -0.11 -1.43 5.92 30.60 0.18 -1.25 16 6 C -0.13 -2.21 5.49 30.59 0.17 -2.04 16 7 C 0.15 2.71 1.90 44.99 0.09 2.79 16 8 H 0.08 1.68 7.58 -2.39 -0.02 1.66 16 9 N -0.68 -15.58 4.38 -444.01 -1.94 -17.52 16 10 C 0.53 15.53 7.85 87.22 0.68 16.21 16 11 O -0.54 -17.32 16.14 -3.30 -0.05 -17.37 16 12 C 0.48 17.47 7.85 87.22 0.69 18.16 16 13 O -0.54 -22.13 13.62 -3.40 -0.05 -22.18 16 14 N -0.58 -21.82 5.45 -305.34 -1.66 -23.48 16 15 C -0.06 -2.64 6.90 37.82 0.26 -2.38 16 16 C -0.05 -2.59 10.84 85.44 0.93 -1.67 16 17 N -0.31 -18.33 10.39 -56.44 -0.59 -18.92 16 18 N -0.16 -9.00 3.73 -189.97 -0.71 -9.71 16 19 C -0.35 -18.61 10.25 84.02 0.86 -17.74 16 20 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 21 C -0.01 -0.28 5.50 84.96 0.47 0.19 16 22 N -0.82 -46.80 11.81 21.66 0.26 -46.55 16 23 Si 1.02 38.17 29.55 68.60 2.03 40.20 16 24 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 25 H -0.28 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.25 -8.89 7.11 99.48 0.71 -8.19 16 27 C -0.08 -3.54 11.50 83.41 0.96 -2.58 16 28 C -0.09 -1.16 1.83 -10.79 -0.02 -1.18 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 C -0.15 -2.20 8.68 71.98 0.62 -1.58 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.53 6.43 -2.39 -0.02 0.51 16 33 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.42 8.92 7.86 -92.71 -0.73 8.20 16 41 H 0.42 13.39 8.29 -92.71 -0.77 12.62 16 42 H 0.18 9.17 5.92 -2.91 -0.02 9.15 16 43 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.19 7.00 8.06 -2.91 -0.02 6.98 16 45 H 0.08 0.89 6.43 -2.39 -0.02 0.87 16 46 H 0.05 0.80 7.45 -2.39 -0.02 0.78 16 47 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -70.87 380.90 3.45 -67.43 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: -0.49 Total: 43.60 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 6.66 Total: 4.49 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -4.65 Total: -116.17 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.10 Total: -39.55 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -70.87 3.45 -67.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746344695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.861 kcal (2) G-P(sol) polarization free energy of solvation -70.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds