Wall clock time and date at job start Tue Mar 31 2020 19:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47234 * 2 1 4 4 C 1.53006 * 109.47071 * 239.99641 * 2 1 3 5 5 C 1.52995 * 109.46887 * 299.99795 * 4 2 1 6 6 C 1.53002 * 109.47773 * 299.99892 * 5 4 2 7 7 C 1.53003 * 109.46495 * 60.00199 * 6 5 4 8 8 H 1.08993 * 109.47588 * 60.00295 * 7 6 5 9 9 N 1.46500 * 109.46544 * 180.02562 * 7 6 5 10 10 C 1.34779 * 120.00012 * 274.99385 * 9 7 6 11 11 O 1.21364 * 119.99656 * 0.02562 * 10 9 7 12 12 C 1.49311 * 120.00050 * 180.02562 * 10 9 7 13 13 O 1.21399 * 119.99849 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99630 * 180.02562 * 12 10 9 15 15 C 1.40295 * 119.99430 * 179.97438 * 14 12 10 16 16 C 1.40719 * 126.10204 * 0.02676 * 15 14 12 17 17 N 1.30879 * 108.37391 * 179.69533 * 16 15 14 18 18 N 1.40054 * 108.43858 * 0.26450 * 17 16 15 19 19 C 1.37295 * 126.05717 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00303 * 179.97438 * 19 18 17 21 21 C 1.39006 * 119.99930 * 359.97438 * 19 18 17 22 22 N 1.31279 * 120.00015 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99869 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47292 * 59.99820 * 23 21 19 25 25 H 1.48500 * 109.47068 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47162 * 299.99475 * 23 21 19 27 27 C 1.35790 * 126.09587 * 180.18054 * 15 14 12 28 28 C 1.52999 * 109.47407 * 300.00068 * 7 6 5 29 29 H 1.09004 * 109.47196 * 300.00313 * 28 7 6 30 30 C 1.52997 * 109.47311 * 180.02562 * 28 7 6 31 31 H 1.08998 * 109.47470 * 299.99966 * 1 2 3 32 32 H 1.08994 * 109.47095 * 60.00757 * 1 2 3 33 33 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46922 * 60.00322 * 4 2 1 35 35 H 1.09004 * 109.46927 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.47232 * 60.00315 * 5 4 2 37 37 H 1.09007 * 109.46933 * 180.02562 * 5 4 2 38 38 H 1.08999 * 109.46665 * 300.00410 * 6 5 4 39 39 H 1.09000 * 109.47139 * 180.02562 * 6 5 4 40 40 H 0.97005 * 120.00092 * 95.00589 * 9 7 6 41 41 H 0.96990 * 120.00259 * 0.02562 * 14 12 10 42 42 H 1.08002 * 125.81498 * 359.96529 * 16 15 14 43 43 H 0.96999 * 119.99820 * 180.02562 * 22 21 19 44 44 H 1.07998 * 126.25868 * 0.03315 * 27 15 14 45 45 H 1.08997 * 109.47046 * 59.99657 * 30 28 7 46 46 H 1.09000 * 109.47152 * 180.02562 * 30 28 7 47 47 H 1.09004 * 109.46839 * 300.00033 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5300 -2.1638 -1.2491 6 6 2.0400 -2.8851 0.0002 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2494 9 7 2.0188 -2.8540 2.4455 10 6 1.3424 -3.9109 2.9374 11 8 0.3286 -4.2910 2.3891 12 6 1.8402 -4.6140 4.1569 13 8 2.8541 -4.2334 4.7056 14 7 1.1640 -5.6712 4.6484 15 6 1.6322 -6.3322 5.7939 16 6 2.7862 -6.0020 6.5283 17 7 2.8911 -6.8380 7.5298 18 7 1.8172 -7.7351 7.4723 19 6 1.5748 -8.7627 8.3500 20 1 0.7123 -9.3981 8.2127 21 6 2.4394 -8.9854 9.4153 22 7 3.4881 -8.2134 9.5820 23 14 2.1092 -10.3831 10.6098 24 1 2.1069 -11.6730 9.8740 25 1 3.1706 -10.4080 11.6482 26 1 0.7881 -10.1798 11.2567 27 6 1.0541 -7.4066 6.3900 28 6 2.0399 -0.7212 1.2493 29 1 3.1300 -0.7212 1.2493 30 6 1.5304 -0.0001 2.4988 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 0.4400 -2.1638 -1.2491 37 1 1.8937 -2.6779 -2.1389 38 1 3.1300 -2.8850 0.0001 39 1 1.6770 -3.9129 0.0000 40 1 2.8292 -2.5502 2.8837 41 1 0.3543 -5.9755 4.2097 42 1 3.4669 -5.1934 6.3061 43 1 4.0917 -8.3691 10.3252 44 1 0.1524 -7.9069 6.0688 45 1 1.8940 -0.5140 3.3885 46 1 1.8934 1.0277 2.4985 47 1 0.4404 -0.0001 2.4991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746344697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:25 Heat of formation + Delta-G solvation = -5.594366 kcal Electronic energy + Delta-G solvation = -28642.811769 eV Core-core repulsion = 24633.834108 eV Total energy + Delta-G solvation = -4008.977662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.82860 -39.93909 -39.10567 -37.76008 -35.00699 -34.08465 -33.16530 -33.08048 -30.63245 -30.30885 -28.12080 -27.69365 -26.15052 -25.31760 -24.04363 -22.20415 -21.57323 -20.99439 -20.36618 -19.50971 -19.02496 -17.89206 -17.41152 -16.75919 -15.80018 -15.62692 -15.49246 -15.32967 -15.10612 -14.68289 -14.36694 -14.12375 -14.03196 -13.87933 -13.53666 -13.41126 -12.99262 -12.97853 -12.79162 -12.61048 -12.26448 -11.85076 -11.73653 -11.67983 -11.58884 -11.51001 -11.27149 -11.23840 -11.03049 -10.90860 -10.64468 -10.60378 -10.58090 -10.28266 -10.26775 -9.22808 -9.19729 -9.09481 -8.87295 -8.12858 -6.77712 -6.60298 -4.27691 1.67783 2.61721 2.94487 3.03592 3.07293 3.33939 3.72243 3.75721 3.96861 4.23804 4.35454 4.38384 4.47124 4.62060 4.73511 4.83796 4.98208 5.00306 5.01633 5.03450 5.10250 5.12633 5.27943 5.32998 5.47945 5.50940 5.62067 5.66793 5.73821 5.77090 5.84235 5.87757 5.93515 6.01597 6.06365 6.20180 6.22574 6.32030 6.36251 6.76275 6.88639 6.92880 7.16417 7.26002 7.77312 7.87832 8.11805 8.18680 8.49422 8.69858 9.31278 9.59982 10.35442 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.036689 B = 0.002024 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.981340 B =13829.693813 C =14065.113374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.148 3.852 8 H 0.094 0.906 9 N -0.699 5.699 10 C 0.516 3.484 11 O -0.529 6.529 12 C 0.483 3.517 13 O -0.523 6.523 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.078 4.078 28 C -0.094 4.094 29 H 0.077 0.923 30 C -0.153 4.153 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.412 0.588 41 H 0.409 0.591 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.149 0.851 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 13.947 -18.120 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.170 4.170 7 C 0.044 3.956 8 H 0.112 0.888 9 N -0.352 5.352 10 C 0.297 3.703 11 O -0.405 6.405 12 C 0.263 3.737 13 O -0.401 6.401 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.203 4.203 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 C -0.113 4.113 29 H 0.096 0.904 30 C -0.210 4.210 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.248 0.752 41 H 0.244 0.756 42 H 0.194 0.806 43 H 0.087 0.913 44 H 0.166 0.834 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.198 13.635 -16.930 21.972 hybrid contribution -0.681 -0.434 -0.268 0.851 sum -3.879 13.201 -17.198 22.024 Atomic orbital electron populations 1.22040 0.95138 1.02463 1.01786 1.21080 0.96169 0.99084 0.93698 0.90761 1.21615 1.00694 0.95692 0.97450 1.21532 1.01307 0.95351 0.97389 1.21951 1.01190 1.00009 0.93892 1.21159 1.00340 0.90564 0.83587 0.88776 1.45812 1.29325 1.30898 1.29177 1.20281 0.83872 0.81137 0.84966 1.90721 1.24364 1.64892 1.60540 1.19697 0.85506 0.82689 0.85764 1.90651 1.24411 1.65269 1.59771 1.42152 1.26623 1.27947 1.25909 1.17255 1.02470 1.02254 0.95503 1.24145 0.98300 1.02416 0.95407 1.78259 1.07226 1.03153 1.20497 1.44555 1.13518 1.18064 1.14361 1.19874 1.12322 1.07334 1.05893 0.86487 1.25666 0.94858 0.98493 0.98127 1.70196 1.09492 1.32998 1.26717 0.85871 0.78832 0.80071 0.79259 1.19095 1.20102 1.19091 1.21308 1.02412 1.02829 0.96382 1.21412 1.00814 0.93385 0.95670 0.90446 1.21920 1.01744 1.00172 0.97168 0.92263 0.92718 0.91879 0.91815 0.91842 0.91373 0.91744 0.91577 0.91180 0.75181 0.75621 0.80571 0.91303 0.83360 0.92128 0.92383 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.15 37.16 0.30 -0.74 16 2 C -0.08 -0.52 2.72 -90.62 -0.25 -0.77 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.73 5.45 -26.73 -0.15 -0.87 16 5 C -0.12 -0.86 5.65 -26.73 -0.15 -1.01 16 6 C -0.13 -1.21 5.50 -26.73 -0.15 -1.36 16 7 C 0.15 1.43 1.62 -67.93 -0.11 1.32 16 8 H 0.09 1.04 5.86 -51.93 -0.30 0.73 16 9 N -0.70 -8.28 4.38 -54.28 -0.24 -8.52 16 10 C 0.52 7.80 7.85 -11.65 -0.09 7.70 16 11 O -0.53 -8.67 16.14 5.48 0.09 -8.59 16 12 C 0.48 8.76 7.85 -11.65 -0.09 8.66 16 13 O -0.52 -10.58 13.62 5.45 0.07 -10.51 16 14 N -0.58 -11.09 5.45 -10.45 -0.06 -11.14 16 15 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 16 C -0.03 -0.70 10.85 -17.02 -0.18 -0.89 16 17 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 18 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 19 C -0.32 -8.43 10.25 -14.82 -0.15 -8.59 16 20 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -21.20 11.81 55.50 0.66 -20.54 16 23 Si 0.94 18.71 29.55 -169.99 -5.02 13.69 16 24 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 27 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 28 C -0.09 -0.71 2.07 -90.62 -0.19 -0.90 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 C -0.15 -1.21 8.68 37.16 0.32 -0.89 16 31 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 37 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.41 4.59 7.85 -40.82 -0.32 4.27 16 41 H 0.41 6.72 8.29 -40.82 -0.34 6.38 16 42 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 43 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.15 2.94 8.06 -52.49 -0.42 2.51 16 45 H 0.06 0.55 7.44 -51.93 -0.39 0.16 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -31.77 373.86 -7.02 -38.79 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.69 Total: 13.60 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.75 Total: -1.44 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.64 Total: -51.18 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.16 Total: -19.09 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.77 -7.02 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746344697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.195 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds