Wall clock time and date at job start Tue Mar 31 2020 19:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47516 * 2 1 4 4 C 1.53006 * 109.46737 * 119.99600 * 2 1 3 5 5 C 1.52999 * 109.47105 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47041 * 299.99957 * 5 4 2 7 7 C 1.53003 * 109.46868 * 60.00318 * 6 5 4 8 8 H 1.09006 * 109.46663 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47534 * 59.99895 * 7 6 5 10 10 C 1.46494 * 119.99857 * 1.08361 * 9 7 6 11 11 C 1.34778 * 119.99779 * 181.08696 * 9 7 6 12 12 O 1.21358 * 120.00385 * 3.15512 * 11 9 7 13 13 C 1.49308 * 119.99562 * 183.15550 * 11 9 7 14 14 O 1.21412 * 120.00150 * 353.93112 * 13 11 9 15 15 N 1.34772 * 119.99846 * 173.93146 * 13 11 9 16 16 C 1.40300 * 119.99962 * 179.97438 * 15 13 11 17 17 C 1.40717 * 126.09990 * 359.69055 * 16 15 13 18 18 N 1.30873 * 108.37588 * 179.85210 * 17 16 15 19 19 N 1.40058 * 108.43684 * 0.40729 * 18 17 16 20 20 C 1.37295 * 126.05696 * 179.75819 * 19 18 17 21 21 H 1.08005 * 120.00108 * 179.97438 * 20 19 18 22 22 C 1.39008 * 120.00005 * 359.97438 * 20 19 18 23 23 N 1.31280 * 119.99773 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99913 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46817 * 60.00055 * 24 22 20 26 26 H 1.48495 * 109.46775 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46767 * 300.00054 * 24 22 20 28 28 C 1.35788 * 126.09959 * 180.02562 * 16 15 13 29 29 C 1.52995 * 109.47377 * 239.99528 * 2 1 3 30 30 H 1.08998 * 109.47516 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47405 * 300.00709 * 1 2 3 32 32 H 1.09002 * 109.46834 * 60.00296 * 1 2 3 33 33 H 1.08999 * 109.46921 * 299.99988 * 4 2 1 34 34 H 1.08998 * 109.46791 * 59.99956 * 4 2 1 35 35 H 1.09004 * 109.47177 * 59.99903 * 5 4 2 36 36 H 1.09002 * 109.47202 * 180.02562 * 5 4 2 37 37 H 1.08990 * 109.47105 * 300.00108 * 6 5 4 38 38 H 1.08998 * 109.47003 * 179.97438 * 6 5 4 39 39 H 1.09005 * 109.47432 * 23.84355 * 10 9 7 40 40 H 1.09001 * 109.47740 * 263.84373 * 10 9 7 41 41 H 1.09001 * 109.47345 * 143.83545 * 10 9 7 42 42 H 0.96997 * 120.00250 * 0.02562 * 15 13 11 43 43 H 1.08002 * 125.81349 * 359.97438 * 17 16 15 44 44 H 0.97005 * 119.99428 * 180.02562 * 23 22 20 45 45 H 1.08007 * 126.24976 * 359.97438 * 28 16 15 46 46 H 1.08996 * 109.47359 * 59.99687 * 29 2 1 47 47 H 1.09004 * 109.46886 * 300.00378 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5699 -0.7218 1.2491 6 6 4.0794 -1.4436 -0.0001 7 6 3.5695 -0.7223 -1.2494 8 1 3.9322 -1.2368 -2.1393 9 7 4.0584 0.6587 -1.2498 10 6 4.9205 1.1308 -0.1635 11 6 3.7150 1.4948 -2.2495 12 8 2.9549 1.1215 -3.1188 13 6 4.2697 2.8805 -2.2874 14 8 4.9407 3.2914 -1.3628 15 7 4.0254 3.6753 -3.3481 16 6 4.5462 4.9776 -3.3836 17 6 5.3304 5.5844 -2.3851 18 7 5.6288 6.7975 -2.7752 19 7 5.0424 7.0167 -4.0281 20 6 5.1218 8.1713 -4.7666 21 1 4.6296 8.2337 -5.7260 22 6 5.8359 9.2601 -4.2797 23 7 6.4346 9.1840 -3.1139 24 14 5.9446 10.8308 -5.2850 25 1 4.5793 11.3693 -5.5110 26 1 6.7573 11.8333 -4.5503 27 1 6.5841 10.5382 -6.5928 28 6 4.3780 5.8795 -4.3846 29 6 2.0400 -0.7213 -1.2491 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6765 -0.2073 2.1393 34 1 1.6765 -1.7488 1.2494 35 1 3.9337 0.3057 1.2488 36 1 3.9332 -1.2360 2.1390 37 1 3.7157 -2.4710 0.0002 38 1 5.1694 -1.4436 -0.0004 39 1 5.4268 0.2809 0.2942 40 1 4.3146 1.6395 0.5864 41 1 5.6617 1.8233 -0.5626 42 1 3.4890 3.3473 -4.0867 43 1 5.6359 5.1263 -1.4560 44 1 6.9326 9.9439 -2.7740 45 1 3.8205 5.7248 -5.2966 46 1 1.6767 -0.2077 -2.1392 47 1 1.6766 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746363804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:43 Heat of formation + Delta-G solvation = 13.339195 kcal Electronic energy + Delta-G solvation = -29449.972138 eV Core-core repulsion = 25441.815497 eV Total energy + Delta-G solvation = -4008.156641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.31615 -41.52638 -40.15711 -38.87009 -36.56861 -35.66643 -34.92848 -33.10328 -32.29696 -31.66486 -29.88085 -28.17140 -27.22569 -26.83048 -25.55131 -23.38947 -22.91900 -22.16871 -21.48552 -21.23999 -20.10550 -19.39761 -18.58252 -17.64397 -17.44726 -17.31040 -16.75191 -16.56790 -16.14234 -15.77527 -15.59368 -15.49086 -15.17397 -15.00358 -14.83152 -14.51682 -14.29610 -14.05314 -13.52529 -13.46599 -13.27608 -13.21314 -13.13386 -13.00868 -12.88831 -12.81436 -12.53390 -12.37769 -12.13352 -12.07483 -11.92153 -11.68697 -11.29140 -11.11213 -11.03855 -10.90050 -10.85981 -10.13757 -10.11376 -9.69799 -8.60767 -8.48740 -6.26320 0.32895 1.29950 1.30948 1.41817 1.56842 1.72988 2.05088 2.11667 2.48528 2.54320 2.86177 3.07583 3.43610 3.73309 3.79848 3.82859 4.13348 4.19472 4.30992 4.39356 4.47661 4.48303 4.52891 4.57520 4.62134 4.73257 4.76905 4.85569 4.92109 4.95779 4.97669 4.99049 5.02609 5.11410 5.19104 5.24796 5.28125 5.31955 5.32249 5.38774 5.42973 5.55293 5.68305 5.91380 6.01909 6.22622 6.42830 6.67946 6.80702 7.10158 7.41190 7.63332 8.50248 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027490 B = 0.002371 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.308466 B =11806.922166 C =12044.121886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.039 0.961 4 C -0.107 4.107 5 C -0.151 4.151 6 C -0.118 4.118 7 C 0.142 3.858 8 H 0.078 0.922 9 N -0.567 5.567 10 C 0.058 3.942 11 C 0.515 3.485 12 O -0.540 6.540 13 C 0.483 3.517 14 O -0.531 6.531 15 N -0.585 5.585 16 C -0.055 4.055 17 C -0.047 4.047 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.354 4.354 21 H 0.140 0.860 22 C -0.004 4.004 23 N -0.820 5.820 24 Si 1.019 2.981 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.254 1.254 28 C -0.078 4.078 29 C -0.130 4.130 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.421 0.579 43 H 0.178 0.822 44 H 0.278 0.722 45 H 0.185 0.815 46 H 0.060 0.940 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -20.808 5.621 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.057 0.943 4 C -0.144 4.144 5 C -0.188 4.188 6 C -0.155 4.155 7 C 0.040 3.960 8 H 0.096 0.904 9 N -0.299 5.299 10 C -0.083 4.083 11 C 0.298 3.702 12 O -0.418 6.418 13 C 0.266 3.734 14 O -0.409 6.409 15 N -0.230 5.230 16 C -0.161 4.161 17 C -0.222 4.222 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.486 4.486 21 H 0.158 0.842 22 C -0.216 4.216 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.178 1.178 26 H -0.201 1.201 27 H -0.178 1.178 28 C -0.228 4.228 29 C -0.168 4.168 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.258 0.742 43 H 0.194 0.806 44 H 0.088 0.912 45 H 0.202 0.798 46 H 0.079 0.921 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.124 -19.566 6.296 21.447 hybrid contribution -0.585 0.062 -0.846 1.030 sum -6.709 -19.504 5.450 21.334 Atomic orbital electron populations 1.21789 0.94933 1.02271 1.01127 1.21040 0.95737 0.98535 0.95563 0.94282 1.21538 0.95772 1.00800 0.96322 1.22224 0.95841 1.02779 0.97944 1.21832 1.01495 1.00049 0.92108 1.21408 0.94759 0.79538 1.00272 0.90396 1.47799 1.47954 1.11722 1.22461 1.22742 0.94728 1.01437 0.89371 1.19698 0.82102 0.85543 0.82905 1.90680 1.35608 1.76770 1.38743 1.20351 0.82707 0.87261 0.83109 1.90568 1.39357 1.74622 1.36385 1.42128 1.49537 1.10370 1.20964 1.17293 1.12281 0.87311 0.99202 1.24258 1.03447 0.93212 1.01307 1.78148 1.22502 1.16457 0.96790 1.44820 1.28002 1.08967 1.11337 1.20604 1.35846 0.88592 1.03511 0.84229 1.26871 0.94016 1.03614 0.97149 1.70370 1.24865 1.31983 1.17579 0.84652 0.79550 0.74313 0.77713 1.17812 1.20134 1.17781 1.21984 1.09773 0.88377 1.02710 1.21985 0.94290 1.02075 0.98404 0.91333 0.92617 0.94100 0.92190 0.90775 0.90369 0.90089 0.88206 0.89957 0.87590 0.91871 0.89833 0.74210 0.80553 0.91228 0.79753 0.92084 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.19 71.98 0.66 -1.85 16 2 C -0.09 -1.69 2.56 -10.79 -0.03 -1.72 16 3 H 0.04 0.96 7.61 -2.39 -0.02 0.94 16 4 C -0.11 -1.48 5.20 30.60 0.16 -1.32 16 5 C -0.15 -1.88 5.27 30.59 0.16 -1.71 16 6 C -0.12 -1.36 4.91 30.60 0.15 -1.21 16 7 C 0.14 2.57 2.98 44.98 0.13 2.71 16 8 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 9 N -0.57 -13.45 2.25 -824.43 -1.86 -15.30 16 10 C 0.06 1.26 7.39 127.77 0.94 2.20 16 11 C 0.52 15.70 7.47 87.23 0.65 16.35 16 12 O -0.54 -17.50 14.40 -3.27 -0.05 -17.54 16 13 C 0.48 17.50 7.73 87.23 0.67 18.17 16 14 O -0.53 -21.00 10.30 -3.44 -0.04 -21.03 16 15 N -0.59 -22.10 5.45 -305.32 -1.66 -23.76 16 16 C -0.05 -2.54 6.90 37.82 0.26 -2.28 16 17 C -0.05 -2.49 10.84 85.44 0.93 -1.56 16 18 N -0.31 -18.23 10.39 -56.44 -0.59 -18.82 16 19 N -0.16 -9.04 3.73 -189.97 -0.71 -9.75 16 20 C -0.35 -18.70 10.25 84.02 0.86 -17.84 16 21 H 0.14 6.40 7.83 -2.91 -0.02 6.37 16 22 C 0.00 -0.22 5.50 84.96 0.47 0.25 16 23 N -0.82 -46.70 11.81 21.66 0.26 -46.44 16 24 Si 1.02 38.22 29.55 68.60 2.03 40.25 16 25 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 26 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 28 C -0.08 -3.65 11.50 83.41 0.96 -2.69 16 29 C -0.13 -2.45 4.50 30.58 0.14 -2.32 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.19 3.68 -2.38 -0.01 1.19 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.83 6.88 -2.39 -0.02 0.81 16 39 H 0.11 1.58 4.95 -2.38 -0.01 1.57 16 40 H 0.06 1.41 6.70 -2.39 -0.02 1.40 16 41 H 0.08 2.29 5.40 -2.39 -0.01 2.27 16 42 H 0.42 13.63 8.31 -92.71 -0.77 12.86 16 43 H 0.18 9.11 5.92 -2.91 -0.02 9.09 16 44 H 0.28 14.54 8.31 -92.70 -0.77 13.77 16 45 H 0.19 7.02 8.06 -2.91 -0.02 6.99 16 46 H 0.06 1.53 5.98 -2.39 -0.01 1.52 16 47 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -70.63 364.30 4.75 -65.87 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: 0.24 Total: 41.33 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 7.12 Total: 5.19 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.56 Total: -114.07 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.08 Total: -38.58 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -70.63 4.75 -65.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746363804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.214 kcal (2) G-P(sol) polarization free energy of solvation -70.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds