Wall clock time and date at job start Tue Mar 31 2020 19:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47024 * 2 1 4 4 C 1.52995 * 109.46873 * 239.99735 * 2 1 3 5 5 C 1.53005 * 109.46873 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47143 * 60.00083 * 5 4 2 7 7 C 1.52999 * 109.46882 * 299.99951 * 6 5 4 8 8 H 1.09003 * 109.47480 * 299.99938 * 7 6 5 9 9 N 1.46501 * 109.46819 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00029 * 300.00079 * 9 7 6 11 11 C 1.34778 * 120.00306 * 120.00155 * 9 7 6 12 12 O 1.21363 * 119.99668 * 5.35293 * 11 9 7 13 13 C 1.49298 * 120.00247 * 185.35642 * 11 9 7 14 14 O 1.21406 * 120.00346 * 5.97387 * 13 11 9 15 15 N 1.34780 * 120.00229 * 185.96808 * 13 11 9 16 16 C 1.40298 * 120.00272 * 179.97438 * 15 13 11 17 17 C 1.40718 * 126.09665 * 0.02848 * 16 15 13 18 18 N 1.30879 * 108.37289 * 180.02562 * 17 16 15 19 19 N 1.40059 * 108.43878 * 359.97438 * 18 17 16 20 20 C 1.37291 * 126.05933 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00333 * 179.97438 * 20 19 18 22 22 C 1.39009 * 119.99830 * 359.97438 * 20 19 18 23 23 N 1.31286 * 119.99909 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00024 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47363 * 89.99516 * 24 22 20 26 26 H 1.48497 * 109.47218 * 210.00005 * 24 22 20 27 27 H 1.48502 * 109.47093 * 329.99667 * 24 22 20 28 28 C 1.35783 * 126.09758 * 179.72044 * 16 15 13 29 29 C 1.52996 * 109.47171 * 60.00235 * 7 6 5 30 30 H 1.08998 * 109.46814 * 300.00014 * 1 2 3 31 31 H 1.09001 * 109.47071 * 60.00089 * 1 2 3 32 32 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47437 * 299.99913 * 4 2 1 34 34 H 1.09001 * 109.47127 * 60.00211 * 4 2 1 35 35 H 1.08998 * 109.46814 * 180.02562 * 5 4 2 36 36 H 1.09004 * 109.47105 * 299.99722 * 5 4 2 37 37 H 1.09004 * 109.46836 * 179.97438 * 6 5 4 38 38 H 1.09003 * 109.47012 * 60.00175 * 6 5 4 39 39 H 1.08999 * 109.46837 * 95.25470 * 10 9 7 40 40 H 1.08998 * 109.46646 * 215.25587 * 10 9 7 41 41 H 1.09001 * 109.46904 * 335.25390 * 10 9 7 42 42 H 0.96996 * 119.99658 * 0.02562 * 15 13 11 43 43 H 1.08004 * 125.81726 * 359.96255 * 17 16 15 44 44 H 0.96995 * 119.99584 * 180.02562 * 23 22 20 45 45 H 1.07996 * 126.25411 * 359.97438 * 28 16 15 46 46 H 1.09004 * 109.47242 * 60.00051 * 29 7 6 47 47 H 1.09001 * 109.47240 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 3.5705 -0.7202 1.2489 8 1 3.9335 0.3076 1.2487 9 7 4.0599 -1.4101 2.4451 10 6 3.7071 -2.8129 2.6776 11 6 4.8347 -0.7543 3.3318 12 8 5.0471 0.4322 3.1909 13 6 5.4316 -1.4875 4.4872 14 8 5.3100 -2.6926 4.5698 15 7 6.1056 -0.8115 5.4388 16 6 6.6661 -1.5005 6.5249 17 6 6.6035 -2.8885 6.7477 18 7 7.2390 -3.1568 7.8599 19 7 7.7312 -1.9572 8.3894 20 6 8.4529 -1.8218 9.5494 21 1 8.7857 -0.8449 9.8675 22 6 8.7552 -2.9423 10.3146 23 7 8.3502 -4.1298 9.9283 24 14 9.7377 -2.7582 11.8927 25 1 8.8096 -2.5382 13.0309 26 1 10.5286 -3.9924 12.1302 27 1 10.6561 -1.5976 11.7714 28 6 7.3706 -0.9475 7.5454 29 6 2.0406 -0.7208 1.2493 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6767 -1.7489 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.9333 -1.2342 -2.1397 36 1 3.9330 0.3071 -1.2498 37 1 5.1706 -1.4415 -0.0008 38 1 3.7176 -2.4694 0.0000 39 1 4.5046 -3.4549 2.3034 40 1 3.5756 -2.9822 3.7463 41 1 2.7786 -3.0453 2.1560 42 1 6.2024 0.1513 5.3730 43 1 6.1135 -3.6095 6.1101 44 1 8.5608 -4.9116 10.4625 45 1 7.6013 0.1004 7.6681 46 1 1.6776 -1.7487 1.2496 47 1 1.6772 -0.2073 2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746363807.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:54 Heat of formation + Delta-G solvation = 6.383417 kcal Electronic energy + Delta-G solvation = -28666.338347 eV Core-core repulsion = 24657.880080 eV Total energy + Delta-G solvation = -4008.458266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.81585 -39.76473 -38.87407 -37.71477 -35.68238 -34.18083 -33.16361 -32.57667 -30.38517 -30.23279 -28.05829 -26.95367 -26.71472 -25.45561 -24.18954 -22.42579 -21.51030 -20.92529 -19.94447 -19.54887 -19.35641 -17.68877 -17.24113 -16.74510 -15.88707 -15.68555 -15.50332 -15.15033 -14.99535 -14.71408 -14.47246 -14.17123 -13.93594 -13.70696 -13.48458 -13.13673 -13.04067 -12.92588 -12.90740 -12.67158 -12.27742 -12.15377 -11.86489 -11.73461 -11.47448 -11.38593 -11.28796 -11.25665 -11.12530 -10.91088 -10.71710 -10.64243 -10.55787 -10.47761 -10.25869 -9.23249 -8.94288 -8.83656 -8.76179 -8.12951 -6.77307 -6.60702 -4.27796 1.67245 2.51930 2.93007 3.03515 3.08422 3.31772 3.68351 3.71425 3.87040 4.31138 4.36880 4.42440 4.52831 4.56131 4.73567 4.82421 4.97934 4.98858 5.04333 5.11319 5.13119 5.25043 5.29013 5.33954 5.40870 5.51046 5.61700 5.66461 5.70617 5.78039 5.86539 5.89194 5.94959 6.01329 6.04041 6.16986 6.20084 6.36227 6.38339 6.77052 6.88677 6.94663 7.14119 7.16743 7.72571 7.83655 8.11708 8.18624 8.49792 8.69997 9.31181 9.59897 10.35125 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.037784 B = 0.002033 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.872396 B =13772.046450 C =13908.338125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.128 4.128 7 C 0.138 3.862 8 H 0.102 0.898 9 N -0.586 5.586 10 C 0.077 3.923 11 C 0.514 3.486 12 O -0.532 6.532 13 C 0.484 3.516 14 O -0.517 6.517 15 N -0.584 5.584 16 C -0.068 4.068 17 C -0.027 4.027 18 N -0.261 5.261 19 N -0.139 5.139 20 C -0.321 4.321 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.263 1.263 28 C -0.078 4.078 29 C -0.123 4.123 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.408 0.592 43 H 0.178 0.822 44 H 0.276 0.724 45 H 0.149 0.851 46 H 0.068 0.932 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 6.068 -18.410 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.166 4.166 7 C 0.035 3.965 8 H 0.120 0.880 9 N -0.319 5.319 10 C -0.065 4.065 11 C 0.297 3.703 12 O -0.408 6.408 13 C 0.265 3.735 14 O -0.395 6.395 15 N -0.227 5.227 16 C -0.174 4.174 17 C -0.202 4.202 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.135 0.865 22 C -0.172 4.172 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.187 1.187 28 C -0.229 4.229 29 C -0.161 4.161 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.243 0.757 43 H 0.195 0.805 44 H 0.086 0.914 45 H 0.166 0.834 46 H 0.087 0.913 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.309 4.662 -17.528 21.374 hybrid contribution 0.243 1.195 0.052 1.220 sum -11.066 5.857 -17.476 21.498 Atomic orbital electron populations 1.21814 0.94964 1.01865 1.01733 1.21098 0.95625 0.99797 0.94331 0.90932 1.21632 0.95415 1.00796 0.97455 1.21496 0.95633 1.00991 0.97320 1.21886 1.01110 0.99910 0.93682 1.21193 0.93920 0.98103 0.83314 0.88028 1.47719 1.48922 1.13492 1.21777 1.22144 1.00031 0.79791 1.04508 1.20347 0.79366 0.86852 0.83715 1.90707 1.60073 1.14866 1.75195 1.19623 0.82345 0.87624 0.83921 1.90618 1.58811 1.13638 1.76435 1.42171 1.49515 1.10720 1.20268 1.17253 1.13849 0.92547 0.93753 1.24141 1.04679 0.93422 0.98007 1.78257 1.17285 1.03570 1.10032 1.44559 1.29349 1.03109 1.13528 1.19918 1.32008 0.96364 0.97095 0.86456 1.25668 0.97044 0.94562 0.99885 1.70208 1.35256 0.98408 1.35537 0.85804 0.79342 0.78755 0.80137 1.19534 1.20046 1.18743 1.21308 1.11212 0.94530 0.95870 1.21954 0.94370 1.01459 0.98296 0.92602 0.92642 0.92660 0.91830 0.91873 0.91551 0.91694 0.91462 0.91341 0.91925 0.88517 0.91896 0.75677 0.80547 0.91369 0.83389 0.91295 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.20 37.16 0.34 -0.57 16 2 C -0.09 -0.63 2.72 -90.62 -0.25 -0.88 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.12 -0.73 5.20 -26.73 -0.14 -0.87 16 5 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 6 C -0.13 -1.11 5.20 -26.73 -0.14 -1.25 16 7 C 0.14 1.43 2.51 -67.93 -0.17 1.26 16 8 H 0.10 1.22 6.91 -51.93 -0.36 0.86 16 9 N -0.59 -7.50 2.76 -174.50 -0.48 -7.99 16 10 C 0.08 0.90 8.26 59.85 0.49 1.39 16 11 C 0.51 8.14 7.72 -11.66 -0.09 8.05 16 12 O -0.53 -9.09 15.83 5.49 0.09 -9.01 16 13 C 0.48 8.82 7.67 -11.66 -0.09 8.73 16 14 O -0.52 -10.16 10.52 5.45 0.06 -10.10 16 15 N -0.58 -11.13 5.45 -10.46 -0.06 -11.19 16 16 C -0.07 -1.57 6.90 -83.92 -0.58 -2.15 16 17 C -0.03 -0.69 10.84 -17.02 -0.18 -0.87 16 18 N -0.26 -7.45 10.39 30.81 0.32 -7.13 16 19 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 20 C -0.32 -8.41 10.25 -14.82 -0.15 -8.56 16 21 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.14 11.81 55.50 0.66 -20.49 16 24 Si 0.94 18.70 29.55 -169.99 -5.02 13.68 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 28 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 29 C -0.12 -1.06 4.48 -26.73 -0.12 -1.18 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.56 7.67 -51.93 -0.40 0.17 16 39 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.10 1.32 5.95 -51.93 -0.31 1.01 16 41 H 0.06 0.56 6.44 -51.93 -0.33 0.22 16 42 H 0.41 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.18 4.37 5.92 -52.48 -0.31 4.06 16 44 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 46 H 0.07 0.56 6.67 -51.93 -0.35 0.21 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -31.46 376.82 -7.34 -38.80 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -7.01 Total: 10.38 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.52 Total: 1.17 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.39 Total: -50.60 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.14 Total: -19.10 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.46 -7.34 -38.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746363807.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.181 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds