Wall clock time and date at job start Tue Mar 31 2020 19:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46787 * 2 1 4 4 C 1.52998 * 109.46931 * 119.99850 * 2 1 3 5 5 C 1.53001 * 109.46931 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47248 * 300.00193 * 5 4 2 7 7 C 1.53001 * 109.47082 * 59.99746 * 6 5 4 8 8 C 1.53001 * 109.47287 * 300.00230 * 7 6 5 9 9 H 1.08998 * 109.47295 * 299.99990 * 8 7 6 10 10 N 1.46497 * 109.47269 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00346 * 300.00216 * 10 8 7 12 12 C 1.34779 * 119.99628 * 119.99929 * 10 8 7 13 13 O 1.21367 * 120.00451 * 5.35261 * 12 10 8 14 14 C 1.49311 * 119.99725 * 185.35527 * 12 10 8 15 15 O 1.21404 * 120.00247 * 5.97464 * 14 12 10 16 16 N 1.34779 * 119.99881 * 185.97485 * 14 12 10 17 17 C 1.40290 * 119.99955 * 179.97438 * 16 14 12 18 18 C 1.40725 * 126.10151 * 0.02562 * 17 16 14 19 19 N 1.30869 * 108.37719 * 179.97438 * 18 17 16 20 20 N 1.40065 * 108.43793 * 0.02562 * 19 18 17 21 21 C 1.37291 * 126.05532 * 179.97438 * 20 19 18 22 22 H 1.08007 * 119.99992 * 179.97438 * 21 20 19 23 23 C 1.39001 * 120.00371 * 359.97438 * 21 20 19 24 24 N 1.31285 * 119.99976 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00343 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47075 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47268 * 119.99981 * 25 23 21 28 28 H 1.48494 * 109.47207 * 239.99949 * 25 23 21 29 29 C 1.35791 * 126.09929 * 179.71455 * 17 16 14 30 30 H 1.09000 * 109.47409 * 300.00263 * 1 2 3 31 31 H 1.08996 * 109.47448 * 60.00117 * 1 2 3 32 32 H 1.08998 * 109.47295 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47262 * 60.00441 * 4 2 1 34 34 H 1.08995 * 109.47224 * 299.99736 * 4 2 1 35 35 H 1.08996 * 109.47448 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.47295 * 60.00075 * 5 4 2 37 37 H 1.08992 * 109.47147 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.46876 * 300.00138 * 6 5 4 39 39 H 1.09006 * 109.47126 * 59.99792 * 7 6 5 40 40 H 1.08995 * 109.46993 * 180.02562 * 7 6 5 41 41 H 1.09005 * 109.47449 * 95.25204 * 11 10 8 42 42 H 1.08998 * 109.47538 * 215.25426 * 11 10 8 43 43 H 1.08995 * 109.47003 * 335.25632 * 11 10 8 44 44 H 0.96995 * 120.00013 * 359.97438 * 16 14 12 45 45 H 1.07996 * 125.80883 * 0.02562 * 18 17 16 46 46 H 0.97006 * 120.00144 * 180.02562 * 24 23 21 47 47 H 1.07994 * 126.24879 * 0.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7222 -1.2496 8 6 2.0394 -0.7216 -1.2493 9 1 1.6757 -1.7491 -1.2490 10 7 1.5511 -0.0305 -2.4451 11 6 1.9054 1.3719 -2.6767 12 6 0.7758 -0.6851 -3.3323 13 8 0.4020 -1.8149 -3.0940 14 6 0.3769 -0.0202 -4.6083 15 8 0.8374 1.0653 -4.8970 16 7 -0.4945 -0.6253 -5.4396 17 6 -0.8698 -0.0004 -6.6383 18 6 -0.4179 1.2505 -7.0980 19 7 -0.9870 1.4967 -8.2505 20 7 -1.8216 0.4186 -8.5717 21 6 -2.5917 0.3018 -9.7022 22 1 -3.2018 -0.5769 -9.8517 23 6 -2.5864 1.3142 -10.6546 24 7 -1.8453 2.3826 -10.4728 25 14 -3.6337 1.1549 -12.1932 26 1 -4.3712 -0.1336 -12.1588 27 1 -4.6034 2.2782 -12.2505 28 1 -2.7598 1.1937 -13.3931 29 6 -1.7293 -0.4973 -7.5647 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6767 -1.7489 1.2493 34 1 1.6767 -0.2074 2.1392 35 1 3.9333 -1.2359 2.1386 36 1 3.9337 0.3057 1.2487 37 1 5.1694 -1.4434 -0.0008 38 1 3.7158 -2.4709 -0.0001 39 1 3.9331 0.3054 -1.2498 40 1 3.9321 -1.2365 -2.1395 41 1 2.7793 1.4235 -3.3262 42 1 1.0689 1.8844 -3.1518 43 1 2.1318 1.8515 -1.7245 44 1 -0.8622 -1.4928 -5.2091 45 1 0.2803 1.8969 -6.5872 46 1 -1.8419 3.0893 -11.1373 47 1 -2.2475 -1.4434 -7.5124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746364877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:54 Heat of formation + Delta-G solvation = 8.513101 kcal Electronic energy + Delta-G solvation = -29046.440917 eV Core-core repulsion = 25038.075001 eV Total energy + Delta-G solvation = -4008.365916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.88650 -39.79922 -38.84360 -37.65330 -35.46734 -34.11794 -33.15373 -32.76817 -30.38910 -30.24860 -28.06901 -27.07228 -26.60731 -25.32190 -24.08702 -22.32437 -21.54384 -20.99023 -19.95426 -19.54385 -19.39223 -17.67575 -17.22804 -16.85284 -15.95350 -15.60151 -15.46029 -15.13410 -14.85218 -14.66551 -14.48997 -14.17060 -13.92655 -13.69332 -13.42482 -13.12217 -12.98084 -12.96943 -12.86001 -12.54802 -12.28703 -12.16473 -11.82160 -11.73975 -11.47570 -11.43469 -11.30510 -11.17713 -11.12999 -10.87395 -10.64703 -10.60330 -10.53178 -10.52162 -10.25979 -9.23864 -8.94013 -8.83360 -8.72603 -8.13032 -6.77211 -6.60850 -4.27855 1.68212 2.53367 2.92113 3.03653 3.09441 3.32159 3.68798 3.71615 3.87260 4.30311 4.36962 4.43871 4.55191 4.57737 4.77398 4.85134 4.97843 4.99938 5.05165 5.12649 5.18106 5.19476 5.26309 5.43524 5.49265 5.64516 5.67869 5.72010 5.73250 5.81424 5.85431 5.90092 6.00239 6.01390 6.07447 6.20004 6.20872 6.36232 6.39897 6.77222 6.88863 6.95031 7.15131 7.16980 7.73292 7.84155 8.12181 8.18668 8.50002 8.70096 9.31203 9.59880 10.35014 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.036941 B = 0.002161 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.788002 B =12956.572178 C =13113.851953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.128 4.128 8 C 0.142 3.858 9 H 0.102 0.898 10 N -0.584 5.584 11 C 0.077 3.923 12 C 0.514 3.486 13 O -0.531 6.531 14 C 0.483 3.517 15 O -0.517 6.517 16 N -0.584 5.584 17 C -0.068 4.068 18 C -0.027 4.027 19 N -0.261 5.261 20 N -0.139 5.139 21 C -0.321 4.321 22 H 0.118 0.882 23 C 0.046 3.954 24 N -0.768 5.768 25 Si 0.936 3.064 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.273 1.273 29 C -0.078 4.078 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.408 0.592 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.899 -4.941 19.987 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.167 4.167 8 C 0.039 3.961 9 H 0.120 0.880 10 N -0.316 5.316 11 C -0.065 4.065 12 C 0.297 3.703 13 O -0.408 6.408 14 C 0.264 3.736 15 O -0.395 6.395 16 N -0.227 5.227 17 C -0.174 4.174 18 C -0.202 4.202 19 N -0.091 5.091 20 N 0.094 4.906 21 C -0.453 4.453 22 H 0.136 0.864 23 C -0.172 4.172 24 N -0.394 5.394 25 Si 0.760 3.240 26 H -0.186 1.186 27 H -0.199 1.199 28 H -0.199 1.199 29 C -0.229 4.229 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.243 0.757 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.968 -3.709 18.815 20.766 hybrid contribution -0.506 -1.085 0.107 1.202 sum 7.461 -4.794 18.922 20.897 Atomic orbital electron populations 1.21782 0.94598 1.02202 1.01705 1.21468 0.96341 1.00003 0.94072 0.90693 1.21568 0.95401 1.00934 0.97032 1.21572 0.95651 1.00857 0.97802 1.21498 1.00411 0.99556 0.93953 1.21893 0.94571 1.01612 0.98587 1.21240 0.93610 0.98020 0.83180 0.87997 1.47670 1.49110 1.13288 1.21558 1.22135 1.03431 0.80033 1.00872 1.20325 0.79094 0.86038 0.84817 1.90707 1.54093 1.18714 1.77247 1.19648 0.82233 0.86425 0.85249 1.90618 1.54294 1.20234 1.74366 1.42170 1.41130 1.21385 1.18008 1.17255 1.10874 0.98488 0.90777 1.24139 1.04336 0.96105 0.95669 1.78255 1.08874 1.07986 1.14017 1.44565 1.24592 1.09675 1.11752 1.19965 1.23292 1.07074 0.95020 0.86413 1.25667 0.96970 0.94732 0.99794 1.70219 1.30914 1.05258 1.33019 0.85743 0.79229 0.79193 0.79879 1.18621 1.19871 1.19867 1.21309 1.09283 0.98954 0.93361 0.92698 0.92541 0.92474 0.91660 0.91596 0.91874 0.91887 0.91614 0.91703 0.91338 0.91425 0.91948 0.88542 0.91931 0.75689 0.80552 0.91424 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.03 37.16 0.34 -1.07 16 2 C -0.10 -0.86 2.10 -90.62 -0.19 -1.05 16 3 H 0.07 0.62 6.66 -51.93 -0.35 0.27 16 4 C -0.11 -0.78 5.20 -26.73 -0.14 -0.92 16 5 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 6 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 7 C -0.13 -1.12 5.21 -26.73 -0.14 -1.26 16 8 C 0.14 1.47 1.96 -67.93 -0.13 1.34 16 9 H 0.10 1.23 6.91 -51.93 -0.36 0.87 16 10 N -0.58 -7.35 1.99 -174.50 -0.35 -7.70 16 11 C 0.08 0.89 8.26 59.84 0.49 1.39 16 12 C 0.51 8.03 7.72 -11.65 -0.09 7.94 16 13 O -0.53 -8.95 15.83 5.48 0.09 -8.86 16 14 C 0.48 8.76 7.67 -11.65 -0.09 8.67 16 15 O -0.52 -10.12 10.52 5.45 0.06 -10.06 16 16 N -0.58 -11.10 5.45 -10.45 -0.06 -11.16 16 17 C -0.07 -1.57 6.90 -83.92 -0.58 -2.15 16 18 C -0.03 -0.69 10.85 -17.02 -0.18 -0.87 16 19 N -0.26 -7.44 10.39 30.81 0.32 -7.12 16 20 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 21 C -0.32 -8.40 10.25 -14.82 -0.15 -8.55 16 22 H 0.12 2.76 7.83 -52.48 -0.41 2.35 16 23 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 24 N -0.77 -21.14 11.81 55.50 0.66 -20.48 16 25 Si 0.94 18.71 29.55 -169.99 -5.02 13.69 16 26 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 28 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 29 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.64 7.60 -51.93 -0.39 0.25 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.56 7.67 -51.93 -0.40 0.17 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.10 1.31 5.95 -51.93 -0.31 1.00 16 43 H 0.06 0.56 6.44 -51.93 -0.33 0.22 16 44 H 0.41 6.77 8.31 -40.82 -0.34 6.43 16 45 H 0.18 4.37 5.92 -52.49 -0.31 4.06 16 46 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -31.32 375.61 -7.14 -38.46 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -6.99 Total: 10.76 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.47 Total: 0.64 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.53 Total: -50.28 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.14 Total: -18.93 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.32 -7.14 -38.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746364877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.975 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds