Wall clock time and date at job start Tue Mar 31 2020 19:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46787 * 2 1 4 4 C 1.52998 * 109.46931 * 119.99850 * 2 1 3 5 5 C 1.53001 * 109.46931 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47248 * 300.00193 * 5 4 2 7 7 C 1.53001 * 109.47082 * 59.99746 * 6 5 4 8 8 C 1.53001 * 109.47287 * 300.00230 * 7 6 5 9 9 H 1.08998 * 109.47295 * 299.99990 * 8 7 6 10 10 N 1.46497 * 109.47269 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00346 * 300.00216 * 10 8 7 12 12 C 1.34779 * 119.99628 * 119.99929 * 10 8 7 13 13 O 1.21367 * 120.00451 * 5.35261 * 12 10 8 14 14 C 1.49311 * 119.99725 * 185.35527 * 12 10 8 15 15 O 1.21404 * 120.00247 * 5.97464 * 14 12 10 16 16 N 1.34779 * 119.99881 * 185.97485 * 14 12 10 17 17 C 1.40290 * 119.99955 * 179.97438 * 16 14 12 18 18 C 1.40725 * 126.10151 * 0.02562 * 17 16 14 19 19 N 1.30869 * 108.37719 * 179.97438 * 18 17 16 20 20 N 1.40065 * 108.43793 * 0.02562 * 19 18 17 21 21 C 1.37291 * 126.05532 * 179.97438 * 20 19 18 22 22 H 1.08007 * 119.99992 * 179.97438 * 21 20 19 23 23 C 1.39001 * 120.00371 * 359.97438 * 21 20 19 24 24 N 1.31285 * 119.99976 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00343 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47075 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47268 * 119.99981 * 25 23 21 28 28 H 1.48494 * 109.47207 * 239.99949 * 25 23 21 29 29 C 1.35791 * 126.09929 * 179.71455 * 17 16 14 30 30 H 1.09000 * 109.47409 * 300.00263 * 1 2 3 31 31 H 1.08996 * 109.47448 * 60.00117 * 1 2 3 32 32 H 1.08998 * 109.47295 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47262 * 60.00441 * 4 2 1 34 34 H 1.08995 * 109.47224 * 299.99736 * 4 2 1 35 35 H 1.08996 * 109.47448 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.47295 * 60.00075 * 5 4 2 37 37 H 1.08992 * 109.47147 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.46876 * 300.00138 * 6 5 4 39 39 H 1.09006 * 109.47126 * 59.99792 * 7 6 5 40 40 H 1.08995 * 109.46993 * 180.02562 * 7 6 5 41 41 H 1.09005 * 109.47449 * 95.25204 * 11 10 8 42 42 H 1.08998 * 109.47538 * 215.25426 * 11 10 8 43 43 H 1.08995 * 109.47003 * 335.25632 * 11 10 8 44 44 H 0.96995 * 120.00013 * 359.97438 * 16 14 12 45 45 H 1.07996 * 125.80883 * 0.02562 * 18 17 16 46 46 H 0.97006 * 120.00144 * 180.02562 * 24 23 21 47 47 H 1.07994 * 126.24879 * 0.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7222 -1.2496 8 6 2.0394 -0.7216 -1.2493 9 1 1.6757 -1.7491 -1.2490 10 7 1.5511 -0.0305 -2.4451 11 6 1.9054 1.3719 -2.6767 12 6 0.7758 -0.6851 -3.3323 13 8 0.4020 -1.8149 -3.0940 14 6 0.3769 -0.0202 -4.6083 15 8 0.8374 1.0653 -4.8970 16 7 -0.4945 -0.6253 -5.4396 17 6 -0.8698 -0.0004 -6.6383 18 6 -0.4179 1.2505 -7.0980 19 7 -0.9870 1.4967 -8.2505 20 7 -1.8216 0.4186 -8.5717 21 6 -2.5917 0.3018 -9.7022 22 1 -3.2018 -0.5769 -9.8517 23 6 -2.5864 1.3142 -10.6546 24 7 -1.8453 2.3826 -10.4728 25 14 -3.6337 1.1549 -12.1932 26 1 -4.3712 -0.1336 -12.1588 27 1 -4.6034 2.2782 -12.2505 28 1 -2.7598 1.1937 -13.3931 29 6 -1.7293 -0.4973 -7.5647 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6767 -1.7489 1.2493 34 1 1.6767 -0.2074 2.1392 35 1 3.9333 -1.2359 2.1386 36 1 3.9337 0.3057 1.2487 37 1 5.1694 -1.4434 -0.0008 38 1 3.7158 -2.4709 -0.0001 39 1 3.9331 0.3054 -1.2498 40 1 3.9321 -1.2365 -2.1395 41 1 2.7793 1.4235 -3.3262 42 1 1.0689 1.8844 -3.1518 43 1 2.1318 1.8515 -1.7245 44 1 -0.8622 -1.4928 -5.2091 45 1 0.2803 1.8969 -6.5872 46 1 -1.8419 3.0893 -11.1373 47 1 -2.2475 -1.4434 -7.5124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746364877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:52 Heat of formation + Delta-G solvation = -10.268089 kcal Electronic energy + Delta-G solvation = -29047.255331 eV Core-core repulsion = 25038.075001 eV Total energy + Delta-G solvation = -4009.180330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.21122 -41.43791 -40.09068 -38.93712 -36.66707 -35.67545 -34.90952 -33.46425 -32.29933 -31.08178 -29.87679 -28.06885 -27.61361 -26.94389 -25.41692 -23.31207 -22.84693 -22.24226 -21.38682 -20.94187 -20.43700 -19.39840 -18.62916 -18.06273 -17.45412 -17.21268 -16.76858 -16.59423 -15.87779 -15.72553 -15.47424 -15.46291 -15.12833 -14.96623 -14.85157 -14.76196 -14.23609 -13.82580 -13.80336 -13.55230 -13.50269 -13.29841 -13.19659 -12.94362 -12.84223 -12.81306 -12.52889 -12.38857 -12.06485 -12.03266 -11.95196 -11.79754 -11.33986 -11.27615 -11.20658 -11.07557 -10.87318 -10.30763 -10.14376 -9.76684 -8.61544 -8.49462 -6.26765 0.28786 1.26309 1.27890 1.41430 1.59534 1.71143 2.02653 2.10240 2.45557 2.52978 2.84904 3.07044 3.42145 3.61646 3.76216 3.90216 4.13010 4.18331 4.25164 4.39032 4.45094 4.48340 4.51991 4.52398 4.53861 4.68179 4.75693 4.83064 4.93421 4.95587 4.97992 4.99320 5.05737 5.13428 5.17258 5.21754 5.24899 5.30232 5.32488 5.34251 5.40706 5.46347 5.56231 5.90598 5.97050 6.21326 6.40829 6.66398 6.76312 7.07531 7.40864 7.62765 8.49958 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.036941 B = 0.002161 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.788002 B =12956.572178 C =13113.851953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.086 0.914 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.124 4.124 8 C 0.139 3.861 9 H 0.085 0.915 10 N -0.571 5.571 11 C 0.078 3.922 12 C 0.517 3.483 13 O -0.545 6.545 14 C 0.484 3.516 15 O -0.530 6.530 16 N -0.585 5.585 17 C -0.055 4.055 18 C -0.047 4.047 19 N -0.307 5.307 20 N -0.164 5.164 21 C -0.352 4.352 22 H 0.141 0.859 23 C -0.006 4.006 24 N -0.821 5.821 25 Si 1.020 2.980 26 H -0.242 1.242 27 H -0.272 1.272 28 H -0.272 1.272 29 C -0.077 4.077 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.421 0.579 45 H 0.178 0.822 46 H 0.278 0.722 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.115 -5.948 21.709 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.104 0.896 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.163 4.163 8 C 0.038 3.962 9 H 0.103 0.897 10 N -0.302 5.302 11 C -0.064 4.064 12 C 0.300 3.700 13 O -0.424 6.424 14 C 0.266 3.734 15 O -0.408 6.408 16 N -0.230 5.230 17 C -0.161 4.161 18 C -0.222 4.222 19 N -0.139 5.139 20 N 0.068 4.932 21 C -0.483 4.483 22 H 0.158 0.842 23 C -0.218 4.218 24 N -0.448 5.448 25 Si 0.838 3.162 26 H -0.165 1.165 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.227 4.227 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.258 0.742 45 H 0.194 0.806 46 H 0.088 0.912 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.210 -4.734 20.597 22.673 hybrid contribution -0.472 -0.788 -0.225 0.946 sum 7.737 -5.523 20.372 22.480 Atomic orbital electron populations 1.21771 0.95494 1.01441 1.01457 1.21465 0.95488 1.00547 0.93823 0.89598 1.21558 0.96065 1.00573 0.96404 1.21563 0.94843 1.01355 0.97751 1.21498 1.01099 0.99176 0.93384 1.21878 0.92947 1.02352 0.99100 1.21472 0.94847 0.97133 0.82794 0.89700 1.47796 1.47488 1.13616 1.21334 1.22156 1.02378 0.79288 1.02572 1.19805 0.80014 0.85851 0.84377 1.90706 1.55141 1.19141 1.77397 1.20242 0.81202 0.86090 0.85831 1.90617 1.54414 1.20943 1.74863 1.42119 1.41864 1.21969 1.17047 1.17291 1.09614 0.97459 0.91726 1.24255 1.04845 0.97468 0.95641 1.78150 1.10391 1.09876 1.15465 1.44838 1.25267 1.10097 1.12975 1.20676 1.23941 1.08383 0.95332 0.84185 1.26881 0.97884 0.93829 1.03174 1.70382 1.33252 1.06541 1.34660 0.84528 0.77094 0.79899 0.74645 1.16469 1.19679 1.19706 1.21986 1.08823 0.99616 0.92324 0.91055 0.94644 0.93513 0.92119 0.90241 0.90565 0.91125 0.90438 0.92121 0.90330 0.92804 0.92033 0.90635 0.88581 0.74188 0.80576 0.91241 0.79704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.03 71.98 0.65 -1.94 16 2 C -0.09 -1.41 2.10 -10.79 -0.02 -1.43 16 3 H 0.09 1.13 6.66 -2.39 -0.02 1.12 16 4 C -0.11 -1.21 5.20 30.59 0.16 -1.05 16 5 C -0.12 -1.09 5.92 30.60 0.18 -0.91 16 6 C -0.11 -1.31 5.92 30.60 0.18 -1.13 16 7 C -0.12 -1.94 5.21 30.59 0.16 -1.78 16 8 C 0.14 2.70 1.96 44.99 0.09 2.78 16 9 H 0.08 1.98 6.91 -2.39 -0.02 1.97 16 10 N -0.57 -13.92 1.99 -824.35 -1.64 -15.57 16 11 C 0.08 1.71 8.26 127.77 1.06 2.77 16 12 C 0.52 16.05 7.72 87.23 0.67 16.72 16 13 O -0.55 -18.23 15.83 -3.30 -0.05 -18.28 16 14 C 0.48 17.65 7.67 87.23 0.67 18.32 16 15 O -0.53 -21.11 10.52 -3.41 -0.04 -21.15 16 16 N -0.59 -22.17 5.45 -305.32 -1.66 -23.84 16 17 C -0.05 -2.54 6.90 37.83 0.26 -2.28 16 18 C -0.05 -2.48 10.85 85.44 0.93 -1.55 16 19 N -0.31 -18.23 10.39 -56.44 -0.59 -18.82 16 20 N -0.16 -9.06 3.73 -189.98 -0.71 -9.77 16 21 C -0.35 -18.56 10.25 84.02 0.86 -17.70 16 22 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 23 C -0.01 -0.29 5.50 84.96 0.47 0.18 16 24 N -0.82 -46.74 11.81 21.66 0.26 -46.49 16 25 Si 1.02 38.29 29.55 68.60 2.03 40.32 16 26 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 27 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 28 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 29 C -0.08 -3.60 11.50 83.41 0.96 -2.64 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.03 0.78 7.60 -2.39 -0.02 0.76 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 1.08 7.67 -2.38 -0.02 1.06 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 1.40 8.10 -2.38 -0.02 1.38 16 42 H 0.08 2.04 5.95 -2.39 -0.01 2.03 16 43 H 0.10 1.47 6.44 -2.39 -0.02 1.46 16 44 H 0.42 13.69 8.31 -92.71 -0.77 12.92 16 45 H 0.18 9.12 5.92 -2.91 -0.02 9.10 16 46 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 47 H 0.19 7.02 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -70.64 375.61 5.09 -65.55 By element: Atomic # 1 Polarization: 39.45 SS G_CDS: 0.22 Total: 39.68 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 7.27 Total: 8.36 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -4.35 Total: -114.47 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.09 Total: -39.43 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -70.64 5.09 -65.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746364877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.281 kcal (2) G-P(sol) polarization free energy of solvation -70.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds