Wall clock time and date at job start Tue Mar 31 2020 19:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46787 * 2 1 4 4 C 1.52995 * 109.47124 * 239.99700 * 2 1 3 5 5 C 1.52999 * 109.47124 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47126 * 59.99915 * 5 4 2 7 7 C 1.53005 * 109.47122 * 300.00128 * 6 5 4 8 8 C 1.52994 * 109.46919 * 59.99952 * 7 6 5 9 9 H 1.09001 * 109.47319 * 60.00146 * 8 7 6 10 10 N 1.46510 * 109.46763 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99876 * 60.00287 * 10 8 7 12 12 C 1.34776 * 119.99557 * 240.00033 * 10 8 7 13 13 O 1.21366 * 120.00395 * 3.63511 * 12 10 8 14 14 C 1.49315 * 119.99292 * 183.63832 * 12 10 8 15 15 O 1.21396 * 120.00152 * 354.16126 * 14 12 10 16 16 N 1.34775 * 119.99580 * 174.17029 * 14 12 10 17 17 C 1.40296 * 119.99984 * 180.02562 * 16 14 12 18 18 C 1.40718 * 126.09680 * 359.94966 * 17 16 14 19 19 N 1.30884 * 108.37278 * 179.79895 * 18 17 16 20 20 N 1.40061 * 108.43674 * 0.37710 * 19 18 17 21 21 C 1.37297 * 126.05652 * 179.87754 * 20 19 18 22 22 H 1.07997 * 119.99748 * 179.69301 * 21 20 19 23 23 C 1.39011 * 119.99544 * 359.42180 * 21 20 19 24 24 N 1.31277 * 120.00110 * 0.26882 * 23 21 20 25 25 Si 1.86799 * 119.99613 * 180.27363 * 23 21 20 26 26 H 1.48504 * 109.47076 * 59.99693 * 25 23 21 27 27 H 1.48495 * 109.47115 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47090 * 300.00243 * 25 23 21 29 29 C 1.35786 * 126.10122 * 179.97438 * 17 16 14 30 30 H 1.08999 * 109.47172 * 300.00220 * 1 2 3 31 31 H 1.08998 * 109.47473 * 60.00283 * 1 2 3 32 32 H 1.09001 * 109.47150 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47040 * 299.99986 * 4 2 1 34 34 H 1.08999 * 109.47439 * 59.99801 * 4 2 1 35 35 H 1.08996 * 109.47571 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.47150 * 299.99919 * 5 4 2 37 37 H 1.09001 * 109.47612 * 60.00109 * 6 5 4 38 38 H 1.09007 * 109.47384 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47006 * 299.99906 * 7 6 5 40 40 H 1.08998 * 109.46865 * 180.02562 * 7 6 5 41 41 H 1.08999 * 109.46902 * 263.98822 * 11 10 8 42 42 H 1.09000 * 109.47318 * 23.98646 * 11 10 8 43 43 H 1.08995 * 109.46934 * 143.99200 * 11 10 8 44 44 H 0.97003 * 120.00413 * 359.97438 * 16 14 12 45 45 H 1.07999 * 125.81495 * 0.03994 * 18 17 16 46 46 H 0.97002 * 119.99833 * 180.02562 * 24 23 21 47 47 H 1.07999 * 126.24998 * 359.94167 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0794 -1.4434 0.0004 7 6 3.5694 -0.7220 1.2497 8 6 2.0395 -0.7215 1.2493 9 1 1.6757 -1.7491 1.2491 10 7 1.5511 -0.0313 2.4458 11 6 1.9055 1.3710 2.6784 12 6 0.7759 -0.6866 3.3324 13 8 0.5366 -1.8659 3.1742 14 6 0.2113 0.0384 4.5093 15 8 0.5350 1.1881 4.7264 16 7 -0.6574 -0.5837 5.3307 17 6 -1.1883 0.0977 6.4362 18 6 -0.9034 1.4248 6.8072 19 7 -1.5882 1.7077 7.8861 20 7 -2.3278 0.5756 8.2508 21 6 -3.1695 0.4736 9.3307 22 1 -3.6978 -0.4495 9.5183 23 6 -3.3374 1.5567 10.1858 24 7 -2.6951 2.6787 9.9577 25 14 -4.4767 1.4155 11.6593 26 1 -4.0019 0.3257 12.5495 27 1 -4.4804 2.6985 12.4069 28 1 -5.8530 1.1095 11.1933 29 6 -2.0683 -0.4060 7.3394 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 -1.7490 -1.2491 34 1 1.6766 -0.2076 -2.1392 35 1 3.9334 -1.2361 -2.1385 36 1 3.9337 0.3057 -1.2487 37 1 3.7158 -2.4709 0.0003 38 1 5.1695 -1.4434 0.0009 39 1 3.9331 0.3055 1.2498 40 1 3.9328 -1.2358 2.1396 41 1 2.7712 1.4222 3.3387 42 1 2.1448 1.8477 1.7279 43 1 1.0641 1.8862 3.1417 44 1 -0.9162 -1.5023 5.1571 45 1 -0.2364 2.0969 6.2878 46 1 -2.8120 3.4344 10.5546 47 1 -2.4866 -1.4017 7.3366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746364878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:59 Heat of formation + Delta-G solvation = 11.439963 kcal Electronic energy + Delta-G solvation = -29061.468073 eV Core-core repulsion = 25053.229075 eV Total energy + Delta-G solvation = -4008.238998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -40.89441 -39.80022 -38.84939 -37.66590 -35.47417 -34.12138 -33.16017 -32.76362 -30.38621 -30.24477 -28.07827 -27.05288 -26.61418 -25.31594 -24.07840 -22.33493 -21.54162 -21.00010 -19.95384 -19.53905 -19.42492 -17.68110 -17.20980 -16.84765 -15.93617 -15.61563 -15.46396 -15.14429 -14.84902 -14.67050 -14.47682 -14.21005 -13.92242 -13.71964 -13.44083 -13.13182 -13.00501 -12.96116 -12.83632 -12.55462 -12.30417 -12.16489 -11.81625 -11.73155 -11.45673 -11.42042 -11.27329 -11.17732 -11.10293 -10.89032 -10.63671 -10.59241 -10.58352 -10.52319 -10.26489 -9.23006 -8.94263 -8.85679 -8.63439 -8.13300 -6.77814 -6.60750 -4.28057 1.67995 2.53277 2.94095 3.03256 3.06990 3.31967 3.69803 3.70778 3.87606 4.30590 4.36575 4.44008 4.55297 4.57524 4.77711 4.85296 4.97804 4.98513 5.06347 5.12885 5.18385 5.19826 5.27588 5.44009 5.49455 5.64851 5.69297 5.72086 5.73570 5.81412 5.85652 5.90394 6.01365 6.04408 6.08344 6.19693 6.21924 6.35753 6.40611 6.76588 6.88143 6.97711 7.15565 7.16972 7.73174 7.83866 8.11815 8.18323 8.49616 8.69670 9.30798 9.59522 10.34974 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.036805 B = 0.002165 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.592980 B =12929.380357 C =13050.545235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.128 4.128 8 C 0.142 3.858 9 H 0.102 0.898 10 N -0.582 5.582 11 C 0.063 3.937 12 C 0.514 3.486 13 O -0.532 6.532 14 C 0.484 3.516 15 O -0.517 6.517 16 N -0.583 5.583 17 C -0.069 4.069 18 C -0.027 4.027 19 N -0.261 5.261 20 N -0.138 5.138 21 C -0.322 4.322 22 H 0.117 0.883 23 C 0.046 3.954 24 N -0.768 5.768 25 Si 0.936 3.064 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.266 1.266 29 C -0.078 4.078 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.112 0.888 44 H 0.408 0.592 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.471 -5.506 -18.891 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.166 4.166 8 C 0.039 3.961 9 H 0.120 0.880 10 N -0.315 5.315 11 C -0.079 4.079 12 C 0.297 3.703 13 O -0.409 6.409 14 C 0.266 3.734 15 O -0.395 6.395 16 N -0.226 5.226 17 C -0.174 4.174 18 C -0.202 4.202 19 N -0.091 5.091 20 N 0.095 4.905 21 C -0.454 4.454 22 H 0.135 0.865 23 C -0.171 4.171 24 N -0.394 5.394 25 Si 0.760 3.240 26 H -0.191 1.191 27 H -0.201 1.201 28 H -0.191 1.191 29 C -0.229 4.229 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.130 0.870 44 H 0.243 0.757 45 H 0.195 0.805 46 H 0.087 0.913 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.326 -4.173 -17.834 20.554 hybrid contribution -0.352 -1.174 -0.059 1.227 sum 8.975 -5.347 -17.893 20.719 Atomic orbital electron populations 1.21794 0.94621 1.02141 1.01849 1.21470 0.96323 1.00049 0.94057 0.90656 1.21568 0.95404 1.00924 0.97031 1.21570 0.95652 1.00854 0.97801 1.21501 1.00388 0.99569 0.93967 1.21879 0.94596 1.01547 0.98570 1.21244 0.93699 0.98016 0.83165 0.88007 1.47684 1.48741 1.13437 1.21592 1.22408 1.04043 0.80319 1.01093 1.20288 0.79337 0.86819 0.83856 1.90707 1.59416 1.15363 1.75395 1.19656 0.82160 0.87079 0.84538 1.90546 1.60003 1.16886 1.72094 1.42177 1.40853 1.15754 1.23783 1.17250 1.09715 0.95266 0.95215 1.24143 1.03989 0.94481 0.97620 1.78261 1.10462 1.06068 1.14354 1.44553 1.24821 1.06129 1.14995 1.19874 1.22320 1.01567 1.01659 0.86501 1.25663 0.97443 0.94644 0.99379 1.70195 1.33415 1.01648 1.34147 0.85872 0.79899 0.78475 0.79801 1.19100 1.20098 1.19090 1.21306 1.08389 0.96543 0.96695 0.92462 0.92606 0.92554 0.91668 0.91577 0.91875 0.91891 0.91697 0.91642 0.91394 0.91441 0.92330 0.91980 0.86980 0.75667 0.80543 0.91306 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.03 37.16 0.34 -1.10 16 2 C -0.10 -0.87 2.10 -90.62 -0.19 -1.06 16 3 H 0.08 0.63 6.67 -51.93 -0.35 0.29 16 4 C -0.11 -0.79 5.20 -26.73 -0.14 -0.93 16 5 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 6 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 7 C -0.13 -1.12 5.20 -26.73 -0.14 -1.26 16 8 C 0.14 1.48 1.96 -67.93 -0.13 1.35 16 9 H 0.10 1.23 6.90 -51.93 -0.36 0.87 16 10 N -0.58 -7.38 2.00 -174.50 -0.35 -7.72 16 11 C 0.06 0.74 8.57 59.84 0.51 1.25 16 12 C 0.51 8.05 7.73 -11.65 -0.09 7.96 16 13 O -0.53 -9.01 15.82 5.48 0.09 -8.93 16 14 C 0.48 8.76 7.74 -11.65 -0.09 8.67 16 15 O -0.52 -10.05 10.28 5.46 0.06 -9.99 16 16 N -0.58 -11.05 5.45 -10.45 -0.06 -11.11 16 17 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 18 C -0.03 -0.68 10.85 -17.02 -0.18 -0.87 16 19 N -0.26 -7.43 10.39 30.81 0.32 -7.11 16 20 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 21 C -0.32 -8.40 10.25 -14.82 -0.15 -8.56 16 22 H 0.12 2.72 7.83 -52.49 -0.41 2.30 16 23 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 24 N -0.77 -21.10 11.81 55.50 0.66 -20.45 16 25 Si 0.94 18.66 29.55 -169.99 -5.02 13.64 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 27 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 28 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 29 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 30 H 0.06 0.66 7.60 -51.93 -0.39 0.27 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.57 6.45 -51.93 -0.33 0.23 16 43 H 0.11 1.56 5.35 -51.94 -0.28 1.28 16 44 H 0.41 6.76 8.31 -40.82 -0.34 6.42 16 45 H 0.18 4.35 5.92 -52.49 -0.31 4.04 16 46 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.15 2.93 8.06 -52.49 -0.42 2.50 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -31.15 375.21 -7.10 -38.25 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -6.96 Total: 11.11 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.45 Total: 0.46 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.53 Total: -50.19 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.14 Total: -18.92 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.15 -7.10 -38.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746364878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.690 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds