Wall clock time and date at job start Tue Mar 31 2020 19:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46787 * 2 1 4 4 C 1.52995 * 109.47124 * 239.99700 * 2 1 3 5 5 C 1.52999 * 109.47124 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47126 * 59.99915 * 5 4 2 7 7 C 1.53005 * 109.47122 * 300.00128 * 6 5 4 8 8 C 1.52994 * 109.46919 * 59.99952 * 7 6 5 9 9 H 1.09001 * 109.47319 * 60.00146 * 8 7 6 10 10 N 1.46510 * 109.46763 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99876 * 60.00287 * 10 8 7 12 12 C 1.34776 * 119.99557 * 240.00033 * 10 8 7 13 13 O 1.21366 * 120.00395 * 3.63511 * 12 10 8 14 14 C 1.49315 * 119.99292 * 183.63832 * 12 10 8 15 15 O 1.21396 * 120.00152 * 354.16126 * 14 12 10 16 16 N 1.34775 * 119.99580 * 174.17029 * 14 12 10 17 17 C 1.40296 * 119.99984 * 180.02562 * 16 14 12 18 18 C 1.40718 * 126.09680 * 359.94966 * 17 16 14 19 19 N 1.30884 * 108.37278 * 179.79895 * 18 17 16 20 20 N 1.40061 * 108.43674 * 0.37710 * 19 18 17 21 21 C 1.37297 * 126.05652 * 179.87754 * 20 19 18 22 22 H 1.07997 * 119.99748 * 179.69301 * 21 20 19 23 23 C 1.39011 * 119.99544 * 359.42180 * 21 20 19 24 24 N 1.31277 * 120.00110 * 0.26882 * 23 21 20 25 25 Si 1.86799 * 119.99613 * 180.27363 * 23 21 20 26 26 H 1.48504 * 109.47076 * 59.99693 * 25 23 21 27 27 H 1.48495 * 109.47115 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47090 * 300.00243 * 25 23 21 29 29 C 1.35786 * 126.10122 * 179.97438 * 17 16 14 30 30 H 1.08999 * 109.47172 * 300.00220 * 1 2 3 31 31 H 1.08998 * 109.47473 * 60.00283 * 1 2 3 32 32 H 1.09001 * 109.47150 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47040 * 299.99986 * 4 2 1 34 34 H 1.08999 * 109.47439 * 59.99801 * 4 2 1 35 35 H 1.08996 * 109.47571 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.47150 * 299.99919 * 5 4 2 37 37 H 1.09001 * 109.47612 * 60.00109 * 6 5 4 38 38 H 1.09007 * 109.47384 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47006 * 299.99906 * 7 6 5 40 40 H 1.08998 * 109.46865 * 180.02562 * 7 6 5 41 41 H 1.08999 * 109.46902 * 263.98822 * 11 10 8 42 42 H 1.09000 * 109.47318 * 23.98646 * 11 10 8 43 43 H 1.08995 * 109.46934 * 143.99200 * 11 10 8 44 44 H 0.97003 * 120.00413 * 359.97438 * 16 14 12 45 45 H 1.07999 * 125.81495 * 0.03994 * 18 17 16 46 46 H 0.97002 * 119.99833 * 180.02562 * 24 23 21 47 47 H 1.07999 * 126.24998 * 359.94167 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0794 -1.4434 0.0004 7 6 3.5694 -0.7220 1.2497 8 6 2.0395 -0.7215 1.2493 9 1 1.6757 -1.7491 1.2491 10 7 1.5511 -0.0313 2.4458 11 6 1.9055 1.3710 2.6784 12 6 0.7759 -0.6866 3.3324 13 8 0.5366 -1.8659 3.1742 14 6 0.2113 0.0384 4.5093 15 8 0.5350 1.1881 4.7264 16 7 -0.6574 -0.5837 5.3307 17 6 -1.1883 0.0977 6.4362 18 6 -0.9034 1.4248 6.8072 19 7 -1.5882 1.7077 7.8861 20 7 -2.3278 0.5756 8.2508 21 6 -3.1695 0.4736 9.3307 22 1 -3.6978 -0.4495 9.5183 23 6 -3.3374 1.5567 10.1858 24 7 -2.6951 2.6787 9.9577 25 14 -4.4767 1.4155 11.6593 26 1 -4.0019 0.3257 12.5495 27 1 -4.4804 2.6985 12.4069 28 1 -5.8530 1.1095 11.1933 29 6 -2.0683 -0.4060 7.3394 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 -1.7490 -1.2491 34 1 1.6766 -0.2076 -2.1392 35 1 3.9334 -1.2361 -2.1385 36 1 3.9337 0.3057 -1.2487 37 1 3.7158 -2.4709 0.0003 38 1 5.1695 -1.4434 0.0009 39 1 3.9331 0.3055 1.2498 40 1 3.9328 -1.2358 2.1396 41 1 2.7712 1.4222 3.3387 42 1 2.1448 1.8477 1.7279 43 1 1.0641 1.8862 3.1417 44 1 -0.9162 -1.5023 5.1571 45 1 -0.2364 2.0969 6.2878 46 1 -2.8120 3.4344 10.5546 47 1 -2.4866 -1.4017 7.3366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746364878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:57 Heat of formation + Delta-G solvation = -7.168648 kcal Electronic energy + Delta-G solvation = -29062.275003 eV Core-core repulsion = 25053.229075 eV Total energy + Delta-G solvation = -4009.045928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.22195 -41.43621 -40.09544 -38.94742 -36.68290 -35.66826 -34.90936 -33.46797 -32.29704 -31.07739 -29.88058 -28.05831 -27.62518 -26.93993 -25.40439 -23.32296 -22.85546 -22.24168 -21.38548 -20.96521 -20.44475 -19.40489 -18.60946 -18.05783 -17.44401 -17.20532 -16.78631 -16.59752 -15.85131 -15.76270 -15.51132 -15.46110 -15.13496 -15.00883 -14.85051 -14.72319 -14.25672 -13.84369 -13.79895 -13.57591 -13.49813 -13.30684 -13.20213 -12.89346 -12.84224 -12.79879 -12.53445 -12.33456 -12.13443 -12.05947 -11.93575 -11.80371 -11.33896 -11.27024 -11.21834 -11.05005 -10.86973 -10.25770 -10.14003 -9.74221 -8.61652 -8.48955 -6.26544 0.28634 1.25771 1.30384 1.41380 1.56762 1.72262 2.02719 2.11221 2.46181 2.52760 2.85072 3.07365 3.41239 3.61230 3.75785 3.90205 4.13130 4.18123 4.25948 4.39131 4.44835 4.48310 4.52019 4.52960 4.53534 4.68620 4.74743 4.82603 4.93161 4.95433 4.97920 4.99005 5.05552 5.12607 5.16628 5.22227 5.25621 5.29832 5.32667 5.35973 5.40489 5.48405 5.55906 5.90721 5.97596 6.21488 6.40718 6.66860 6.76492 7.07566 7.40857 7.62907 8.50012 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.036805 B = 0.002165 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.592980 B =12929.380357 C =13050.545235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.085 0.915 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.124 4.124 8 C 0.139 3.861 9 H 0.085 0.915 10 N -0.570 5.570 11 C 0.064 3.936 12 C 0.517 3.483 13 O -0.547 6.547 14 C 0.485 3.515 15 O -0.529 6.529 16 N -0.585 5.585 17 C -0.055 4.055 18 C -0.047 4.047 19 N -0.307 5.307 20 N -0.163 5.163 21 C -0.354 4.354 22 H 0.141 0.859 23 C -0.005 4.005 24 N -0.820 5.820 25 Si 1.019 2.981 26 H -0.254 1.254 27 H -0.277 1.277 28 H -0.254 1.254 29 C -0.077 4.077 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.421 0.579 45 H 0.178 0.822 46 H 0.278 0.722 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.929 -6.580 -20.500 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.104 0.896 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.162 4.162 8 C 0.037 3.963 9 H 0.103 0.897 10 N -0.301 5.301 11 C -0.078 4.078 12 C 0.299 3.701 13 O -0.426 6.426 14 C 0.268 3.732 15 O -0.408 6.408 16 N -0.229 5.229 17 C -0.161 4.161 18 C -0.222 4.222 19 N -0.139 5.139 20 N 0.069 4.931 21 C -0.485 4.485 22 H 0.158 0.842 23 C -0.217 4.217 24 N -0.448 5.448 25 Si 0.838 3.162 26 H -0.178 1.178 27 H -0.202 1.202 28 H -0.178 1.178 29 C -0.228 4.228 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.258 0.742 45 H 0.195 0.805 46 H 0.088 0.912 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 9.815 -5.265 -19.500 22.457 hybrid contribution -0.377 -0.864 0.242 0.974 sum 9.437 -6.129 -19.259 22.305 Atomic orbital electron populations 1.21786 0.95554 1.01439 1.01527 1.21467 0.95439 1.00573 0.93858 0.89630 1.21558 0.96096 1.00571 0.96369 1.21562 0.94817 1.01352 0.97779 1.21501 1.01103 0.99175 0.93383 1.21862 0.92928 1.02301 0.99102 1.21475 0.94984 0.97124 0.82735 0.89706 1.47810 1.47104 1.13798 1.21363 1.22402 1.03016 0.79550 1.02786 1.19784 0.80136 0.86519 0.83648 1.90705 1.60447 1.15710 1.75699 1.20245 0.81271 0.86943 0.84789 1.90558 1.60084 1.17659 1.72455 1.42128 1.41420 1.16273 1.23094 1.17285 1.08681 0.94390 0.95766 1.24265 1.04369 0.95904 0.97656 1.78156 1.11941 1.07983 1.15804 1.44827 1.25636 1.06463 1.16188 1.20603 1.22893 1.02988 1.01999 0.84208 1.26878 0.98714 0.93765 1.02358 1.70366 1.35755 1.02797 1.35867 0.84648 0.77676 0.78541 0.75341 1.17817 1.20151 1.17760 1.21984 1.07730 0.97444 0.95636 0.94664 0.91013 0.93468 0.92092 0.90250 0.90548 0.91144 0.92123 0.90422 0.90375 0.92775 0.92095 0.88765 0.89229 0.74188 0.80526 0.91219 0.79718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.03 71.98 0.65 -2.02 16 2 C -0.09 -1.44 2.10 -10.80 -0.02 -1.46 16 3 H 0.09 1.16 6.67 -2.39 -0.02 1.15 16 4 C -0.11 -1.23 5.20 30.59 0.16 -1.07 16 5 C -0.12 -1.10 5.92 30.59 0.18 -0.92 16 6 C -0.11 -1.32 5.92 30.60 0.18 -1.14 16 7 C -0.12 -1.93 5.20 30.59 0.16 -1.77 16 8 C 0.14 2.70 1.96 44.99 0.09 2.79 16 9 H 0.08 2.00 6.90 -2.39 -0.02 1.98 16 10 N -0.57 -13.96 2.00 -824.33 -1.65 -15.61 16 11 C 0.06 1.42 8.57 127.77 1.10 2.51 16 12 C 0.52 16.08 7.73 87.23 0.67 16.75 16 13 O -0.55 -18.38 15.82 -3.30 -0.05 -18.43 16 14 C 0.49 17.65 7.74 87.23 0.68 18.32 16 15 O -0.53 -20.93 10.28 -3.39 -0.03 -20.97 16 16 N -0.58 -22.11 5.45 -305.33 -1.66 -23.78 16 17 C -0.05 -2.55 6.90 37.82 0.26 -2.29 16 18 C -0.05 -2.47 10.85 85.44 0.93 -1.54 16 19 N -0.31 -18.19 10.39 -56.43 -0.59 -18.78 16 20 N -0.16 -9.02 3.73 -189.98 -0.71 -9.73 16 21 C -0.35 -18.63 10.25 84.02 0.86 -17.76 16 22 H 0.14 6.39 7.83 -2.91 -0.02 6.37 16 23 C 0.00 -0.25 5.50 84.96 0.47 0.21 16 24 N -0.82 -46.66 11.81 21.66 0.26 -46.40 16 25 Si 1.02 38.19 29.55 68.60 2.03 40.22 16 26 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 27 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 28 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 29 C -0.08 -3.62 11.50 83.41 0.96 -2.66 16 30 H 0.03 0.79 7.60 -2.39 -0.02 0.77 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.08 1.07 7.67 -2.39 -0.02 1.05 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.48 6.45 -2.39 -0.02 1.47 16 43 H 0.09 2.48 5.35 -2.51 -0.01 2.47 16 44 H 0.42 13.69 8.31 -92.71 -0.77 12.92 16 45 H 0.18 9.10 5.92 -2.91 -0.02 9.08 16 46 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 47 H 0.19 7.01 8.06 -2.91 -0.02 6.98 16 Total: -1.00 -70.27 375.21 5.13 -65.13 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: 0.23 Total: 40.37 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 7.32 Total: 7.97 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -4.35 Total: -114.29 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.09 Total: -39.40 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -70.27 5.13 -65.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746364878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.963 kcal (2) G-P(sol) polarization free energy of solvation -70.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds