Wall clock time and date at job start Tue Mar 31 2020 19:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47471 * 2 1 4 4 C 1.53000 * 109.47729 * 119.99916 * 2 1 3 5 5 C 1.52999 * 109.47729 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46735 * 300.00222 * 5 4 2 7 7 C 1.52995 * 109.47380 * 59.99946 * 6 5 4 8 8 C 1.52999 * 109.47231 * 299.99750 * 7 6 5 9 9 H 1.09000 * 109.47604 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.47365 * 300.00178 * 8 7 6 11 11 C 1.46505 * 119.99694 * 59.01550 * 10 8 7 12 12 C 1.34773 * 120.00257 * 239.02118 * 10 8 7 13 13 O 1.21368 * 119.99787 * 4.93705 * 12 10 8 14 14 C 1.49305 * 120.00115 * 184.65779 * 12 10 8 15 15 O 1.21405 * 120.00139 * 354.95965 * 14 12 10 16 16 N 1.34780 * 120.00118 * 174.95799 * 14 12 10 17 17 C 1.40290 * 119.99917 * 180.02562 * 16 14 12 18 18 C 1.40723 * 126.10194 * 0.02562 * 17 16 14 19 19 N 1.30878 * 108.37586 * 180.02562 * 18 17 16 20 20 N 1.40067 * 108.43452 * 0.02562 * 19 18 17 21 21 C 1.37292 * 126.05160 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99642 * 185.02524 * 21 20 19 23 23 C 1.39004 * 120.00428 * 5.02560 * 21 20 19 24 24 N 1.31288 * 119.99739 * 354.95032 * 23 21 20 25 25 Si 1.86803 * 120.00369 * 174.94423 * 23 21 20 26 26 H 1.48498 * 109.46851 * 94.99896 * 25 23 21 27 27 H 1.48499 * 109.47085 * 214.99992 * 25 23 21 28 28 H 1.48495 * 109.46971 * 335.00339 * 25 23 21 29 29 C 1.35788 * 126.09778 * 179.71998 * 17 16 14 30 30 H 1.09003 * 109.46673 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46523 * 299.99625 * 1 2 3 32 32 H 1.08998 * 109.47186 * 60.00027 * 1 2 3 33 33 H 1.09003 * 109.46575 * 59.99535 * 4 2 1 34 34 H 1.09004 * 109.46719 * 300.00374 * 4 2 1 35 35 H 1.08998 * 109.47186 * 180.02562 * 5 4 2 36 36 H 1.08997 * 109.46809 * 60.00044 * 5 4 2 37 37 H 1.08997 * 109.47327 * 299.99505 * 6 5 4 38 38 H 1.09005 * 109.46568 * 179.97438 * 6 5 4 39 39 H 1.08996 * 109.47128 * 179.97438 * 7 6 5 40 40 H 1.08997 * 109.47251 * 59.99512 * 7 6 5 41 41 H 1.09001 * 109.47146 * 242.04957 * 11 10 8 42 42 H 1.08997 * 109.47579 * 2.05189 * 11 10 8 43 43 H 1.09002 * 109.46602 * 122.05290 * 11 10 8 44 44 H 0.96998 * 119.99529 * 0.02562 * 16 14 12 45 45 H 1.07994 * 125.81151 * 359.97438 * 18 17 16 46 46 H 0.97001 * 119.99789 * 180.02562 * 24 23 21 47 47 H 1.08005 * 126.24943 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7222 -1.2496 8 6 2.0395 -0.7216 -1.2493 9 1 1.6761 -0.2074 -2.1390 10 7 1.5506 -2.1027 -1.2490 11 6 1.9222 -3.0109 -0.1611 12 6 0.7592 -2.5376 -2.2494 13 8 0.5244 -1.8146 -3.1955 14 6 0.1763 -3.9112 -2.1968 15 8 0.4875 -4.6688 -1.3005 16 7 -0.6953 -4.3101 -3.1442 17 6 -1.2434 -5.6006 -3.0944 18 6 -0.9751 -6.5783 -2.1185 19 7 -1.6693 -7.6499 -2.4063 20 7 -2.4049 -7.4013 -3.5721 21 6 -3.2558 -8.2813 -4.1936 22 1 -3.7131 -8.0163 -5.1355 23 6 -3.5289 -9.5134 -3.6107 24 7 -2.8982 -9.8768 -2.5181 25 14 -4.7932 -10.6519 -4.3819 26 1 -4.1073 -11.6232 -5.2714 27 1 -5.5165 -11.3854 -3.3123 28 1 -5.7609 -9.8521 -5.1751 29 6 -2.1319 -6.1270 -3.9761 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 1.6768 -0.2073 2.1392 35 1 3.9335 -1.2360 2.1386 36 1 3.9338 0.3058 1.2486 37 1 3.7159 -2.4709 -0.0002 38 1 5.1696 -1.4434 -0.0009 39 1 3.9328 -1.2360 -2.1396 40 1 3.9332 0.3053 -1.2499 41 1 2.4917 -3.8479 -0.5651 42 1 2.5306 -2.4754 0.5676 43 1 1.0204 -3.3853 0.3235 44 1 -0.9436 -3.7050 -3.8604 45 1 -0.3091 -6.4642 -1.2761 46 1 -3.0885 -10.7367 -2.1116 47 1 -2.5445 -5.6291 -4.8412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746364880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:04 Heat of formation + Delta-G solvation = 59.199514 kcal Electronic energy + Delta-G solvation = -29589.175435 eV Core-core repulsion = 25583.007446 eV Total energy + Delta-G solvation = -4006.167988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.36049 -39.95646 -38.97286 -37.67905 -34.85674 -33.81025 -33.10777 -33.00924 -31.15672 -30.31220 -28.08030 -27.16904 -26.54865 -25.28263 -24.02913 -22.24463 -21.37363 -21.10174 -20.41826 -19.49476 -19.25605 -17.70033 -17.33948 -16.44308 -16.29482 -15.57550 -15.46517 -15.03574 -14.88418 -14.69484 -14.61981 -13.97407 -13.83453 -13.70707 -13.50404 -13.27393 -12.99005 -12.95105 -12.68961 -12.41240 -12.17619 -12.13383 -11.83041 -11.73559 -11.66362 -11.49153 -11.28881 -11.13471 -11.05922 -10.82944 -10.55074 -10.51884 -10.27127 -10.24230 -9.95961 -9.22515 -8.89970 -8.77925 -8.64433 -8.12187 -6.76180 -6.60701 -4.27322 1.70613 2.56218 2.93183 3.03923 3.09056 3.33833 3.70480 3.72644 3.88325 4.35437 4.38087 4.46556 4.50568 4.59461 4.82435 4.87344 4.97647 5.01285 5.12610 5.14165 5.15742 5.19365 5.28974 5.39469 5.52324 5.56986 5.63086 5.73261 5.77845 5.83786 5.93943 5.96183 6.02327 6.04951 6.10953 6.16671 6.20761 6.37368 6.46428 6.78415 6.89616 6.94855 7.15867 7.18022 7.74542 7.85186 8.13761 8.19590 8.51467 8.71158 9.31965 9.60506 10.35355 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029446 B = 0.002382 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.670908 B =11750.186100 C =12046.115596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.080 0.920 4 C -0.152 4.152 5 C -0.121 4.121 6 C -0.159 4.159 7 C -0.125 4.125 8 C 0.141 3.859 9 H 0.102 0.898 10 N -0.576 5.576 11 C 0.036 3.964 12 C 0.513 3.487 13 O -0.533 6.533 14 C 0.483 3.517 15 O -0.518 6.518 16 N -0.586 5.586 17 C -0.067 4.067 18 C -0.027 4.027 19 N -0.261 5.261 20 N -0.139 5.139 21 C -0.322 4.322 22 H 0.118 0.882 23 C 0.047 3.953 24 N -0.768 5.768 25 Si 0.935 3.065 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.263 1.263 29 C -0.078 4.078 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.408 0.592 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.050 17.544 5.519 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.098 0.902 4 C -0.188 4.188 5 C -0.158 4.158 6 C -0.195 4.195 7 C -0.163 4.163 8 C 0.038 3.962 9 H 0.120 0.880 10 N -0.310 5.310 11 C -0.105 4.105 12 C 0.296 3.704 13 O -0.409 6.409 14 C 0.264 3.736 15 O -0.395 6.395 16 N -0.228 5.228 17 C -0.173 4.173 18 C -0.203 4.203 19 N -0.092 5.092 20 N 0.094 4.906 21 C -0.455 4.455 22 H 0.135 0.865 23 C -0.171 4.171 24 N -0.394 5.394 25 Si 0.759 3.241 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.187 1.187 29 C -0.229 4.229 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.141 0.859 43 H 0.094 0.906 44 H 0.243 0.757 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.880 15.995 6.170 19.787 hybrid contribution -0.470 0.741 -1.037 1.359 sum 9.410 16.736 5.133 19.875 Atomic orbital electron populations 1.21800 0.94688 1.02351 1.01627 1.21425 0.96249 0.99355 0.94492 0.90184 1.22342 0.95653 1.03341 0.97493 1.21553 0.95542 1.00927 0.97827 1.22327 1.00703 1.02164 0.94333 1.21824 0.94427 1.01356 0.98703 1.21214 0.93801 0.81649 0.99550 0.87983 1.47554 1.47823 1.12006 1.23573 1.23356 1.02843 0.93389 0.90882 1.20348 0.79491 0.87904 0.82639 1.90705 1.60173 1.57461 1.32609 1.19655 0.82289 0.87741 0.83878 1.90642 1.60046 1.54352 1.34480 1.42168 1.40706 1.13565 1.26402 1.17254 1.09354 0.86843 1.03864 1.24133 1.03897 0.91106 1.01129 1.78251 1.10124 1.20259 1.00560 1.44550 1.24577 1.06435 1.15028 1.19914 1.22563 0.96580 1.06398 0.86478 1.25663 0.97773 0.97899 0.95749 1.70215 1.33934 1.19827 1.15418 0.85803 0.79733 0.79641 0.78953 1.19612 1.20005 1.18695 1.21313 1.08163 0.89271 1.04157 0.92473 0.92619 0.92554 0.88587 0.91852 0.91713 0.91918 0.88461 0.91941 0.91398 0.90821 0.91325 0.85943 0.90609 0.75727 0.80572 0.91396 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.03 37.16 0.34 -1.10 16 2 C -0.10 -0.82 2.54 -90.62 -0.23 -1.05 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.15 -1.16 4.83 -26.73 -0.13 -1.29 16 5 C -0.12 -0.80 5.57 -26.73 -0.15 -0.95 16 6 C -0.16 -1.19 5.54 -26.73 -0.15 -1.34 16 7 C -0.12 -1.05 5.63 -26.73 -0.15 -1.20 16 8 C 0.14 1.43 2.60 -67.93 -0.18 1.25 16 9 H 0.10 1.18 6.91 -51.93 -0.36 0.82 16 10 N -0.58 -7.14 1.99 -174.49 -0.35 -7.49 16 11 C 0.04 0.41 5.24 59.85 0.31 0.72 16 12 C 0.51 8.01 7.73 -11.66 -0.09 7.92 16 13 O -0.53 -8.99 15.82 5.48 0.09 -8.91 16 14 C 0.48 8.80 7.77 -11.65 -0.09 8.71 16 15 O -0.52 -10.15 10.40 5.45 0.06 -10.09 16 16 N -0.59 -11.19 5.45 -10.46 -0.06 -11.25 16 17 C -0.07 -1.56 6.90 -83.92 -0.58 -2.14 16 18 C -0.03 -0.69 10.85 -17.02 -0.18 -0.88 16 19 N -0.26 -7.47 10.41 30.81 0.32 -7.15 16 20 N -0.14 -3.78 3.73 -11.40 -0.04 -3.83 16 21 C -0.32 -8.45 10.24 -14.82 -0.15 -8.60 16 22 H 0.12 2.75 7.84 -52.48 -0.41 2.33 16 23 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 24 N -0.77 -21.15 11.83 55.50 0.66 -20.49 16 25 Si 0.94 18.72 29.56 -169.99 -5.02 13.69 16 26 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 28 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 29 C -0.08 -1.84 11.50 -16.38 -0.19 -2.02 16 30 H 0.06 0.66 7.60 -51.93 -0.39 0.27 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.82 4.13 -51.93 -0.21 0.61 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.81 3.98 -51.93 -0.21 0.60 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.86 7.31 -51.93 -0.38 0.48 16 42 H 0.12 1.08 1.78 -51.93 -0.09 0.99 16 43 H 0.08 0.98 6.85 -51.93 -0.36 0.62 16 44 H 0.41 6.82 8.30 -40.82 -0.34 6.48 16 45 H 0.18 4.38 5.92 -52.49 -0.31 4.07 16 46 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.15 2.95 8.06 -52.48 -0.42 2.52 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -31.51 362.22 -7.03 -38.54 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.43 Total: 12.37 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.71 Total: -0.86 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.53 Total: -50.21 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.14 Total: -19.00 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.51 -7.03 -38.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746364880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.743 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds