Wall clock time and date at job start Tue Mar 31 2020 19:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47187 * 2 1 4 4 C 1.53007 * 109.46955 * 240.00642 * 2 1 3 5 5 C 1.52999 * 109.46995 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47279 * 60.00261 * 5 4 2 7 7 C 1.53007 * 109.46894 * 299.99801 * 6 5 4 8 8 C 1.52997 * 109.47595 * 120.00734 * 2 1 3 9 9 H 1.09000 * 109.46846 * 299.99622 * 8 2 1 10 10 N 1.46497 * 109.47179 * 59.99433 * 8 2 1 11 11 C 1.46499 * 119.99798 * 59.40488 * 10 8 2 12 12 C 1.34771 * 120.00402 * 239.39820 * 10 8 2 13 13 O 1.21366 * 119.99974 * 5.07278 * 12 10 8 14 14 C 1.49308 * 120.00246 * 185.07530 * 12 10 8 15 15 O 1.21406 * 119.99698 * 354.51950 * 14 12 10 16 16 N 1.34774 * 119.99915 * 174.51877 * 14 12 10 17 17 C 1.40301 * 119.99944 * 179.97438 * 16 14 12 18 18 C 1.40719 * 126.09664 * 359.97438 * 17 16 14 19 19 N 1.30880 * 108.37537 * 179.97438 * 18 17 16 20 20 N 1.40056 * 108.43406 * 0.02562 * 19 18 17 21 21 C 1.37295 * 126.05669 * 179.97438 * 20 19 18 22 22 H 1.08001 * 120.00124 * 184.19511 * 21 20 19 23 23 C 1.39007 * 120.00070 * 4.19882 * 21 20 19 24 24 N 1.31277 * 120.00369 * 163.31107 * 23 21 20 25 25 Si 1.86807 * 119.99811 * 343.03808 * 23 21 20 26 26 H 1.48502 * 109.47022 * 89.99530 * 25 23 21 27 27 H 1.48498 * 109.47016 * 209.99983 * 25 23 21 28 28 H 1.48497 * 109.46761 * 330.00095 * 25 23 21 29 29 C 1.35790 * 126.09915 * 180.28420 * 17 16 14 30 30 H 1.09003 * 109.46892 * 299.99054 * 1 2 3 31 31 H 1.08996 * 109.47559 * 59.99379 * 1 2 3 32 32 H 1.08998 * 109.47119 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47004 * 59.99639 * 4 2 1 34 34 H 1.08998 * 109.46933 * 299.99779 * 4 2 1 35 35 H 1.08998 * 109.47395 * 299.99858 * 5 4 2 36 36 H 1.09000 * 109.46756 * 179.97438 * 5 4 2 37 37 H 1.08995 * 109.47230 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47236 * 59.99500 * 6 5 4 39 39 H 1.08998 * 109.46933 * 299.99884 * 7 6 5 40 40 H 1.08996 * 109.47004 * 180.02562 * 7 6 5 41 41 H 1.09000 * 109.47189 * 241.24371 * 11 10 8 42 42 H 1.09008 * 109.47341 * 1.23744 * 11 10 8 43 43 H 1.08998 * 109.47787 * 121.23718 * 11 10 8 44 44 H 0.97000 * 120.00422 * 359.97438 * 16 14 12 45 45 H 1.08005 * 125.81573 * 359.97438 * 18 17 16 46 46 H 0.97004 * 119.99889 * 4.76967 * 24 23 21 47 47 H 1.07995 * 126.24940 * 0.04537 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0805 -1.4417 -0.0006 7 6 3.5705 -0.7205 1.2488 8 6 2.0401 -0.7214 1.2491 9 1 1.6768 -0.2076 2.1391 10 7 1.5517 -2.1025 1.2490 11 6 1.8947 -3.0007 0.1436 12 6 0.7870 -2.5470 2.2659 13 8 0.4264 -1.7798 3.1343 14 6 0.3835 -3.9834 2.3241 15 8 0.6593 -4.7290 1.4065 16 7 -0.2867 -4.4521 3.3953 17 6 -0.6663 -5.8017 3.4498 18 6 -0.4157 -6.7739 2.4638 19 7 -0.9189 -7.9120 2.8692 20 7 -1.5087 -7.7136 4.1239 21 6 -2.1435 -8.6688 4.8787 22 1 -2.6244 -8.3931 5.8055 23 6 -2.1672 -9.9909 4.4499 24 7 -2.4710 -10.9494 5.2939 25 14 -1.7740 -10.4029 2.6707 26 1 -0.3154 -10.6431 2.5290 27 1 -2.5181 -11.6237 2.2693 28 1 -2.1759 -9.2693 1.7998 29 6 -1.3461 -6.4014 4.4608 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6765 -0.2073 -2.1393 34 1 1.6766 -1.7488 -1.2494 35 1 3.9329 0.3072 -1.2499 36 1 3.9332 -1.2347 -2.1396 37 1 5.1704 -1.4416 -0.0011 38 1 3.7175 -2.4694 -0.0005 39 1 3.9335 0.3073 1.2486 40 1 3.9346 -1.2339 2.1386 41 1 0.9826 -3.3250 -0.3574 42 1 2.5324 -2.4750 -0.5672 43 1 2.4243 -3.8702 0.5328 44 1 -0.5067 -3.8565 4.1286 45 1 0.1034 -6.6090 1.5312 46 1 -2.7462 -10.7304 6.1979 47 1 -1.6928 -5.9269 5.3669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746364882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:09 Heat of formation + Delta-G solvation = 50.096143 kcal Electronic energy + Delta-G solvation = -29699.623417 eV Core-core repulsion = 25693.060677 eV Total energy + Delta-G solvation = -4006.562740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.46525 -40.28930 -39.22653 -37.84850 -35.03160 -33.97659 -33.37814 -33.06345 -31.25447 -30.72835 -28.60602 -27.24021 -26.66879 -25.20304 -23.88042 -22.34328 -21.52859 -21.29107 -20.38281 -19.94362 -19.34210 -18.15824 -17.57469 -16.56140 -16.49212 -16.27322 -15.50515 -15.07985 -15.05615 -14.74898 -14.51202 -14.07365 -13.90367 -13.72095 -13.51540 -13.47701 -13.27930 -13.18292 -12.78193 -12.52213 -12.43862 -12.23614 -12.19336 -11.91540 -11.80347 -11.73248 -11.16792 -11.12140 -11.01980 -10.82803 -10.57772 -10.33856 -10.22924 -10.10529 -10.04315 -9.36833 -8.97176 -8.75486 -8.58636 -8.30153 -7.40835 -7.09573 -4.50940 1.56028 2.42874 2.92551 3.32208 3.49222 3.59575 3.63917 3.91279 4.02235 4.13507 4.28785 4.32897 4.39942 4.44292 4.73758 4.76730 4.80942 4.87625 5.04038 5.07495 5.09366 5.12525 5.22087 5.32710 5.45733 5.49346 5.56886 5.67506 5.71426 5.75468 5.87267 5.89380 5.93657 5.93984 5.98266 6.03991 6.04189 6.09938 6.36149 6.51340 6.66885 6.72619 7.03676 7.30963 7.54468 7.70643 7.94067 7.98114 8.22224 8.45035 8.88504 9.14549 10.03991 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.002622 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.992470 B =10677.420477 C =11126.808505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.153 4.153 5 C -0.121 4.121 6 C -0.157 4.157 7 C -0.126 4.126 8 C 0.141 3.859 9 H 0.103 0.897 10 N -0.575 5.575 11 C 0.035 3.965 12 C 0.513 3.487 13 O -0.530 6.530 14 C 0.487 3.513 15 O -0.518 6.518 16 N -0.588 5.588 17 C -0.060 4.060 18 C 0.007 3.993 19 N -0.356 5.356 20 N -0.142 5.142 21 C -0.380 4.380 22 H 0.115 0.885 23 C 0.041 3.959 24 N -0.822 5.822 25 Si 1.111 2.889 26 H -0.282 1.282 27 H -0.312 1.312 28 H -0.259 1.259 29 C -0.060 4.060 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.125 0.875 43 H 0.075 0.925 44 H 0.411 0.589 45 H 0.185 0.815 46 H 0.281 0.719 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.393 21.491 -10.556 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.098 0.902 4 C -0.190 4.190 5 C -0.159 4.159 6 C -0.193 4.193 7 C -0.164 4.164 8 C 0.038 3.962 9 H 0.121 0.879 10 N -0.309 5.309 11 C -0.105 4.105 12 C 0.296 3.704 13 O -0.407 6.407 14 C 0.268 3.732 15 O -0.395 6.395 16 N -0.231 5.231 17 C -0.166 4.166 18 C -0.164 4.164 19 N -0.190 5.190 20 N 0.093 4.907 21 C -0.513 4.513 22 H 0.132 0.868 23 C -0.175 4.175 24 N -0.449 5.449 25 Si 0.940 3.060 26 H -0.208 1.208 27 H -0.243 1.243 28 H -0.185 1.185 29 C -0.213 4.213 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.142 0.858 43 H 0.093 0.907 44 H 0.246 0.754 45 H 0.202 0.798 46 H 0.093 0.907 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.396 18.865 -11.973 24.644 hybrid contribution -0.318 2.576 2.104 3.341 sum 10.078 21.441 -9.870 25.665 Atomic orbital electron populations 1.21786 0.94654 1.02282 1.01628 1.21410 0.96266 0.99381 0.94412 0.90163 1.22384 0.95679 1.03424 0.97503 1.21557 0.95527 1.00981 0.97821 1.22277 1.00765 1.01950 0.94332 1.21855 0.94375 1.01448 0.98723 1.21236 0.93719 0.81528 0.99730 0.87941 1.47552 1.49388 1.12215 1.21705 1.23366 1.02853 0.93971 0.90342 1.20252 0.79256 0.88790 0.82099 1.90718 1.54105 1.57272 1.38593 1.19713 0.81596 0.88139 0.83740 1.90635 1.54425 1.57850 1.36582 1.42160 1.52123 1.08936 1.19904 1.17126 1.15477 0.83908 1.00073 1.23745 1.03353 0.88818 1.00530 1.76592 1.22694 1.23255 0.96501 1.44740 1.30311 1.05401 1.10293 1.21132 1.36386 0.88827 1.04926 0.86786 1.26990 0.92574 0.90182 1.07797 1.70895 1.33173 1.33749 1.07063 0.82833 0.77258 0.73848 0.72025 1.20840 1.24274 1.18499 1.21318 1.11985 0.86337 1.01655 0.92498 0.92672 0.92553 0.91854 0.88512 0.91872 0.91688 0.91858 0.88643 0.90714 0.91402 0.91298 0.85828 0.90669 0.75375 0.79803 0.90742 0.82839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.04 37.15 0.34 -0.98 16 2 C -0.10 -0.75 2.53 -90.62 -0.23 -0.97 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.15 -1.05 4.83 -26.73 -0.13 -1.18 16 5 C -0.12 -0.73 5.57 -26.73 -0.15 -0.88 16 6 C -0.16 -1.07 5.55 -26.73 -0.15 -1.22 16 7 C -0.13 -0.97 5.63 -26.70 -0.15 -1.12 16 8 C 0.14 1.32 2.60 -67.91 -0.18 1.14 16 9 H 0.10 1.11 6.91 -51.93 -0.36 0.75 16 10 N -0.58 -6.56 2.00 -174.47 -0.35 -6.91 16 11 C 0.04 0.36 5.23 59.85 0.31 0.68 16 12 C 0.51 7.43 7.72 -11.65 -0.09 7.34 16 13 O -0.53 -8.41 15.83 5.48 0.09 -8.32 16 14 C 0.49 8.16 7.77 -11.65 -0.09 8.07 16 15 O -0.52 -9.27 10.40 5.45 0.06 -9.21 16 16 N -0.59 -10.34 5.45 -10.45 -0.06 -10.40 16 17 C -0.06 -1.29 6.90 -83.92 -0.58 -1.87 16 18 C 0.01 0.17 10.84 -17.02 -0.18 -0.01 16 19 N -0.36 -9.21 7.06 30.81 0.22 -8.99 16 20 N -0.14 -3.67 3.69 -11.40 -0.04 -3.71 16 21 C -0.38 -10.12 10.52 -14.82 -0.16 -10.27 16 22 H 0.11 2.94 8.06 -52.49 -0.42 2.52 16 23 C 0.04 1.10 5.50 -17.50 -0.10 1.00 16 24 N -0.82 -22.35 13.68 55.50 0.76 -21.59 16 25 Si 1.11 27.42 26.33 -169.99 -4.48 22.95 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.31 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.26 -6.46 6.18 56.52 0.35 -6.11 16 29 C -0.06 -1.34 11.50 -16.38 -0.19 -1.53 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.74 4.01 -51.93 -0.21 0.53 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.73 4.11 -51.93 -0.21 0.51 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.78 7.30 -51.93 -0.38 0.40 16 42 H 0.12 0.98 1.78 -51.92 -0.09 0.89 16 43 H 0.07 0.88 6.87 -51.93 -0.36 0.52 16 44 H 0.41 6.32 8.30 -40.82 -0.34 5.98 16 45 H 0.19 4.06 5.92 -52.48 -0.31 3.75 16 46 H 0.28 7.27 8.73 -40.82 -0.36 6.91 16 47 H 0.15 2.92 8.06 -52.49 -0.42 2.49 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -30.02 357.48 -6.64 -36.66 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.51 Total: 5.96 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.72 Total: -1.81 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.53 Total: -51.61 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.14 Total: -17.54 kcal Atomic # 14 Polarization: 27.42 SS G_CDS: -4.48 Total: 22.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.02 -6.64 -36.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746364882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.754 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds