Wall clock time and date at job start Tue Mar 31 2020 19:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47187 * 2 1 4 4 C 1.53007 * 109.46955 * 240.00642 * 2 1 3 5 5 C 1.52999 * 109.46995 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47279 * 60.00261 * 5 4 2 7 7 C 1.53007 * 109.46894 * 299.99801 * 6 5 4 8 8 C 1.52997 * 109.47595 * 120.00734 * 2 1 3 9 9 H 1.09000 * 109.46846 * 299.99622 * 8 2 1 10 10 N 1.46497 * 109.47179 * 59.99433 * 8 2 1 11 11 C 1.46499 * 119.99798 * 59.40488 * 10 8 2 12 12 C 1.34771 * 120.00402 * 239.39820 * 10 8 2 13 13 O 1.21366 * 119.99974 * 5.07278 * 12 10 8 14 14 C 1.49308 * 120.00246 * 185.07530 * 12 10 8 15 15 O 1.21406 * 119.99698 * 354.51950 * 14 12 10 16 16 N 1.34774 * 119.99915 * 174.51877 * 14 12 10 17 17 C 1.40301 * 119.99944 * 179.97438 * 16 14 12 18 18 C 1.40719 * 126.09664 * 359.97438 * 17 16 14 19 19 N 1.30880 * 108.37537 * 179.97438 * 18 17 16 20 20 N 1.40056 * 108.43406 * 0.02562 * 19 18 17 21 21 C 1.37295 * 126.05669 * 179.97438 * 20 19 18 22 22 H 1.08001 * 120.00124 * 184.19511 * 21 20 19 23 23 C 1.39007 * 120.00070 * 4.19882 * 21 20 19 24 24 N 1.31277 * 120.00369 * 163.31107 * 23 21 20 25 25 Si 1.86807 * 119.99811 * 343.03808 * 23 21 20 26 26 H 1.48502 * 109.47022 * 89.99530 * 25 23 21 27 27 H 1.48498 * 109.47016 * 209.99983 * 25 23 21 28 28 H 1.48497 * 109.46761 * 330.00095 * 25 23 21 29 29 C 1.35790 * 126.09915 * 180.28420 * 17 16 14 30 30 H 1.09003 * 109.46892 * 299.99054 * 1 2 3 31 31 H 1.08996 * 109.47559 * 59.99379 * 1 2 3 32 32 H 1.08998 * 109.47119 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47004 * 59.99639 * 4 2 1 34 34 H 1.08998 * 109.46933 * 299.99779 * 4 2 1 35 35 H 1.08998 * 109.47395 * 299.99858 * 5 4 2 36 36 H 1.09000 * 109.46756 * 179.97438 * 5 4 2 37 37 H 1.08995 * 109.47230 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47236 * 59.99500 * 6 5 4 39 39 H 1.08998 * 109.46933 * 299.99884 * 7 6 5 40 40 H 1.08996 * 109.47004 * 180.02562 * 7 6 5 41 41 H 1.09000 * 109.47189 * 241.24371 * 11 10 8 42 42 H 1.09008 * 109.47341 * 1.23744 * 11 10 8 43 43 H 1.08998 * 109.47787 * 121.23718 * 11 10 8 44 44 H 0.97000 * 120.00422 * 359.97438 * 16 14 12 45 45 H 1.08005 * 125.81573 * 359.97438 * 18 17 16 46 46 H 0.97004 * 119.99889 * 4.76967 * 24 23 21 47 47 H 1.07995 * 126.24940 * 0.04537 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0805 -1.4417 -0.0006 7 6 3.5705 -0.7205 1.2488 8 6 2.0401 -0.7214 1.2491 9 1 1.6768 -0.2076 2.1391 10 7 1.5517 -2.1025 1.2490 11 6 1.8947 -3.0007 0.1436 12 6 0.7870 -2.5470 2.2659 13 8 0.4264 -1.7798 3.1343 14 6 0.3835 -3.9834 2.3241 15 8 0.6593 -4.7290 1.4065 16 7 -0.2867 -4.4521 3.3953 17 6 -0.6663 -5.8017 3.4498 18 6 -0.4157 -6.7739 2.4638 19 7 -0.9189 -7.9120 2.8692 20 7 -1.5087 -7.7136 4.1239 21 6 -2.1435 -8.6688 4.8787 22 1 -2.6244 -8.3931 5.8055 23 6 -2.1672 -9.9909 4.4499 24 7 -2.4710 -10.9494 5.2939 25 14 -1.7740 -10.4029 2.6707 26 1 -0.3154 -10.6431 2.5290 27 1 -2.5181 -11.6237 2.2693 28 1 -2.1759 -9.2693 1.7998 29 6 -1.3461 -6.4014 4.4608 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6765 -0.2073 -2.1393 34 1 1.6766 -1.7488 -1.2494 35 1 3.9329 0.3072 -1.2499 36 1 3.9332 -1.2347 -2.1396 37 1 5.1704 -1.4416 -0.0011 38 1 3.7175 -2.4694 -0.0005 39 1 3.9335 0.3073 1.2486 40 1 3.9346 -1.2339 2.1386 41 1 0.9826 -3.3250 -0.3574 42 1 2.5324 -2.4750 -0.5672 43 1 2.4243 -3.8702 0.5328 44 1 -0.5067 -3.8565 4.1286 45 1 0.1034 -6.6090 1.5312 46 1 -2.7462 -10.7304 6.1979 47 1 -1.6928 -5.9269 5.3669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746364882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:07 Heat of formation + Delta-G solvation = 32.254848 kcal Electronic energy + Delta-G solvation = -29700.397074 eV Core-core repulsion = 25693.060677 eV Total energy + Delta-G solvation = -4007.336397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.51845 -41.91045 -40.49045 -39.09383 -36.45313 -35.51899 -34.81524 -33.70468 -32.64979 -31.93459 -30.36308 -28.09642 -27.60098 -26.65468 -25.28413 -23.40496 -22.85485 -22.08744 -21.72338 -21.47283 -20.38538 -19.94012 -18.86411 -18.07608 -17.70355 -17.51536 -16.71662 -16.30477 -16.10448 -15.82684 -15.70384 -15.39462 -15.38126 -15.25970 -14.88592 -14.67265 -14.38781 -14.26680 -14.16578 -13.62876 -13.56499 -13.11860 -12.96728 -12.87839 -12.84819 -12.71949 -12.58761 -12.47031 -12.32266 -12.08406 -11.92980 -11.78516 -11.32474 -11.18881 -11.00427 -10.85534 -10.52951 -10.26646 -10.05625 -9.70784 -9.42934 -8.84087 -6.51656 0.26049 1.07210 1.24271 1.50654 1.66842 1.84522 1.96204 2.15493 2.32674 2.39414 2.60535 2.84777 3.35855 3.66870 3.77820 3.84111 4.16622 4.18809 4.20248 4.23935 4.27199 4.44034 4.47585 4.52825 4.60491 4.64942 4.71304 4.77755 4.82146 4.82541 4.91836 4.95550 5.07218 5.11368 5.14912 5.21271 5.29406 5.31687 5.33626 5.35868 5.40224 5.44712 5.63491 5.73543 5.94301 6.06298 6.31976 6.33444 6.71580 6.98886 6.99855 7.23503 8.04440 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.002622 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.992470 B =10677.420477 C =11126.808505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.100 0.900 4 C -0.152 4.152 5 C -0.117 4.117 6 C -0.156 4.156 7 C -0.122 4.122 8 C 0.136 3.864 9 H 0.088 0.912 10 N -0.562 5.562 11 C 0.036 3.964 12 C 0.514 3.486 13 O -0.546 6.546 14 C 0.489 3.511 15 O -0.527 6.527 16 N -0.589 5.589 17 C -0.044 4.044 18 C -0.001 4.001 19 N -0.380 5.380 20 N -0.175 5.175 21 C -0.397 4.397 22 H 0.114 0.886 23 C 0.011 3.989 24 N -0.850 5.850 25 Si 1.142 2.858 26 H -0.288 1.288 27 H -0.305 1.305 28 H -0.267 1.267 29 C -0.045 4.045 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.155 0.845 43 H 0.062 0.938 44 H 0.423 0.577 45 H 0.195 0.805 46 H 0.281 0.719 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.014 24.450 -12.146 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.118 0.882 4 C -0.189 4.189 5 C -0.155 4.155 6 C -0.193 4.193 7 C -0.160 4.160 8 C 0.034 3.966 9 H 0.106 0.894 10 N -0.293 5.293 11 C -0.104 4.104 12 C 0.296 3.704 13 O -0.425 6.425 14 C 0.271 3.729 15 O -0.404 6.404 16 N -0.235 5.235 17 C -0.150 4.150 18 C -0.174 4.174 19 N -0.214 5.214 20 N 0.059 4.941 21 C -0.528 4.528 22 H 0.131 0.869 23 C -0.201 4.201 24 N -0.478 5.478 25 Si 0.970 3.030 26 H -0.215 1.215 27 H -0.235 1.235 28 H -0.193 1.193 29 C -0.198 4.198 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.171 0.829 43 H 0.081 0.919 44 H 0.261 0.739 45 H 0.212 0.788 46 H 0.092 0.908 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 12.023 21.835 -13.566 28.379 hybrid contribution -0.688 1.986 2.475 3.247 sum 11.335 23.821 -11.091 28.617 Atomic orbital electron populations 1.21777 0.95691 1.00905 1.01885 1.21414 0.95294 1.00325 0.93909 0.88160 1.22356 0.96489 1.02700 0.97357 1.21548 0.94529 1.01751 0.97628 1.22259 1.01505 1.01203 0.94342 1.21847 0.92697 1.02716 0.98770 1.21480 0.95038 0.79951 1.00170 0.89361 1.47674 1.47698 1.13279 1.20680 1.23520 1.02741 0.93870 0.90280 1.19813 0.80130 0.87437 0.82981 1.90718 1.55183 1.57086 1.39481 1.20254 0.80434 0.89213 0.82981 1.90629 1.54310 1.58588 1.36862 1.42130 1.52793 1.07586 1.20971 1.17177 1.13707 0.85283 0.98826 1.24051 1.03230 0.88856 1.01275 1.76484 1.23057 1.24706 0.97191 1.44757 1.32274 1.06414 1.10693 1.21077 1.37262 0.89201 1.05283 0.86884 1.27522 0.92816 0.90642 1.09081 1.70901 1.35575 1.33977 1.07356 0.82403 0.76661 0.73548 0.70400 1.21486 1.23505 1.19306 1.21999 1.09967 0.85331 1.02502 0.93477 0.91227 0.94683 0.90669 0.89581 0.90669 0.90603 0.90754 0.89733 0.88688 0.92587 0.92312 0.82866 0.91936 0.73924 0.78841 0.90790 0.79610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.04 71.98 0.65 -1.71 16 2 C -0.09 -1.16 2.53 -10.79 -0.03 -1.19 16 3 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.15 -1.60 4.83 30.60 0.15 -1.45 16 5 C -0.12 -0.95 5.57 30.59 0.17 -0.78 16 6 C -0.16 -1.65 5.55 30.60 0.17 -1.48 16 7 C -0.12 -1.56 5.63 30.61 0.17 -1.38 16 8 C 0.14 2.26 2.60 45.01 0.12 2.38 16 9 H 0.09 1.78 6.91 -2.39 -0.02 1.76 16 10 N -0.56 -12.04 2.00 -824.27 -1.65 -13.69 16 11 C 0.04 0.69 5.23 127.77 0.67 1.36 16 12 C 0.51 14.34 7.72 87.23 0.67 15.02 16 13 O -0.55 -16.75 15.83 -3.30 -0.05 -16.80 16 14 C 0.49 15.82 7.77 87.23 0.68 16.50 16 15 O -0.53 -18.34 10.40 -3.42 -0.04 -18.38 16 16 N -0.59 -19.82 5.45 -305.32 -1.66 -21.48 16 17 C -0.04 -1.82 6.90 37.82 0.26 -1.56 16 18 C 0.00 -0.04 10.84 85.44 0.93 0.89 16 19 N -0.38 -19.62 7.06 -56.43 -0.40 -20.02 16 20 N -0.17 -8.95 3.69 -189.97 -0.70 -9.66 16 21 C -0.40 -21.39 10.52 84.02 0.88 -20.51 16 22 H 0.11 5.93 8.06 -2.91 -0.02 5.90 16 23 C 0.01 0.61 5.50 84.96 0.47 1.08 16 24 N -0.85 -47.14 13.68 21.66 0.30 -46.85 16 25 Si 1.14 56.61 26.33 68.60 1.81 58.42 16 26 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.31 -14.49 7.11 99.48 0.71 -13.79 16 28 H -0.27 -13.38 6.18 99.48 0.62 -12.76 16 29 C -0.05 -1.96 11.50 83.41 0.96 -1.00 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.03 0.71 7.60 -2.39 -0.02 0.69 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 1.09 4.01 -2.39 -0.01 1.08 16 35 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 1.08 4.11 -2.39 -0.01 1.07 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 1.28 7.30 -2.39 -0.02 1.26 16 42 H 0.15 2.08 1.78 -2.38 0.00 2.08 16 43 H 0.06 1.39 6.87 -2.39 -0.02 1.38 16 44 H 0.42 12.24 8.30 -92.71 -0.77 11.47 16 45 H 0.20 8.40 5.92 -2.91 -0.02 8.39 16 46 H 0.28 14.92 8.73 -92.71 -0.81 14.11 16 47 H 0.19 6.61 8.06 -2.91 -0.02 6.59 16 Total: -1.00 -64.70 357.48 4.64 -60.06 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.12 Total: 22.24 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 6.92 Total: 6.16 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -4.11 Total: -111.69 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.09 Total: -35.18 kcal Atomic # 14 Polarization: 56.61 SS G_CDS: 1.81 Total: 58.42 kcal Total: -64.70 4.64 -60.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746364882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.311 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds