Wall clock time and date at job start Tue Mar 31 2020 19:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47184 * 2 1 4 4 C 1.52996 * 109.47553 * 239.99943 * 2 1 3 5 5 C 1.52994 * 109.47733 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46948 * 59.99637 * 5 4 2 7 7 C 1.52993 * 109.47372 * 300.00353 * 6 5 4 8 8 H 1.09002 * 109.47330 * 299.99905 * 7 6 5 9 9 C 1.53002 * 109.47372 * 180.02562 * 7 6 5 10 10 N 1.46496 * 109.47037 * 64.99640 * 9 7 6 11 11 C 1.34777 * 119.99875 * 179.97438 * 10 9 7 12 12 O 1.21368 * 120.00358 * 0.02562 * 11 10 9 13 13 C 1.49306 * 120.00187 * 180.02562 * 11 10 9 14 14 O 1.21409 * 120.00000 * 0.02562 * 13 11 10 15 15 N 1.34777 * 120.00183 * 180.02562 * 13 11 10 16 16 C 1.40295 * 120.00105 * 179.97438 * 15 13 11 17 17 C 1.40726 * 126.09791 * 359.68945 * 16 15 13 18 18 N 1.30876 * 108.37462 * 179.87605 * 17 16 15 19 19 N 1.40063 * 108.43681 * 0.38313 * 18 17 16 20 20 C 1.37293 * 126.05614 * 179.77852 * 19 18 17 21 21 H 1.07997 * 120.00082 * 179.97438 * 20 19 18 22 22 C 1.39008 * 119.99941 * 359.97008 * 20 19 18 23 23 N 1.31281 * 119.99889 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99876 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47011 * 60.00131 * 24 22 20 26 26 H 1.48503 * 109.46934 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46749 * 299.99813 * 24 22 20 28 28 C 1.35783 * 126.10213 * 179.97438 * 16 15 13 29 29 C 1.53002 * 109.47323 * 119.99461 * 2 1 3 30 30 H 1.09000 * 109.47237 * 299.99869 * 1 2 3 31 31 H 1.09001 * 109.47351 * 60.00508 * 1 2 3 32 32 H 1.09002 * 109.46700 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47141 * 299.99758 * 4 2 1 34 34 H 1.09001 * 109.47160 * 59.99432 * 4 2 1 35 35 H 1.09000 * 109.47418 * 180.02562 * 5 4 2 36 36 H 1.09006 * 109.47378 * 300.00286 * 5 4 2 37 37 H 1.09000 * 109.47059 * 180.02562 * 6 5 4 38 38 H 1.09002 * 109.46816 * 60.00573 * 6 5 4 39 39 H 1.09000 * 109.46986 * 305.00077 * 9 7 6 40 40 H 1.08996 * 109.47407 * 185.00305 * 9 7 6 41 41 H 0.96999 * 120.00082 * 0.02562 * 10 9 7 42 42 H 0.96999 * 120.00047 * 359.97438 * 15 13 11 43 43 H 1.08001 * 125.81488 * 0.03549 * 17 16 15 44 44 H 0.97005 * 119.99829 * 180.02562 * 23 22 20 45 45 H 1.08003 * 126.25023 * 359.97438 * 28 16 15 46 46 H 1.09002 * 109.46816 * 60.00581 * 29 2 1 47 47 H 1.08996 * 109.47073 * 300.00330 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4415 -0.0002 7 6 3.5705 -0.7203 1.2490 8 1 3.9334 0.3075 1.2487 9 6 4.0815 -1.4407 2.4983 10 7 5.5415 -1.3363 2.5593 11 6 6.2153 -1.9002 3.5813 12 8 5.6126 -2.4949 4.4509 13 6 7.7032 -1.7933 3.6439 14 8 8.3061 -1.1980 2.7743 15 7 8.3770 -2.3576 4.6656 16 6 9.7752 -2.2576 4.7241 17 6 10.5998 -1.6072 3.7875 18 7 11.8425 -1.7233 4.1812 19 7 11.8626 -2.4564 5.3745 20 6 12.9801 -2.7930 6.0974 21 1 12.8819 -3.3636 7.0090 22 6 14.2381 -2.3995 5.6558 23 7 14.3575 -1.7056 4.5478 24 14 15.7588 -2.8582 6.6390 25 1 15.8586 -4.3367 6.7353 26 1 16.9667 -2.3231 5.9609 27 1 15.6598 -2.2788 8.0028 28 6 10.5745 -2.7758 5.6917 29 6 2.0400 -0.7211 1.2493 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.9333 -1.2341 -2.1397 36 1 3.9330 0.3071 -1.2497 37 1 5.1705 -1.4407 -0.0002 38 1 3.7176 -2.4693 0.0000 39 1 3.7939 -2.4912 2.4551 40 1 3.6469 -0.9813 3.3860 41 1 6.0232 -0.8607 1.8646 42 1 7.8953 -2.8329 5.3606 43 1 10.2641 -1.0968 2.8969 44 1 15.2354 -1.4313 4.2395 45 1 10.2501 -3.3383 6.5547 46 1 1.6767 -1.7488 1.2493 47 1 1.6766 -0.2073 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746377215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:30 Heat of formation + Delta-G solvation = -15.766887 kcal Electronic energy + Delta-G solvation = -27764.758576 eV Core-core repulsion = 23755.339800 eV Total energy + Delta-G solvation = -4009.418775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.54734 -39.70543 -39.14172 -37.86315 -35.51435 -34.27952 -33.19580 -32.65421 -31.57733 -30.32318 -28.12269 -26.86673 -26.59674 -25.10429 -23.46538 -22.45685 -21.09678 -20.84532 -20.42838 -19.97954 -19.45795 -18.14839 -17.43970 -16.39831 -15.87187 -15.70658 -15.50398 -15.20123 -15.12227 -14.77752 -14.74612 -14.27123 -14.10008 -13.81888 -13.69263 -13.45128 -13.12627 -12.98063 -12.75091 -12.65079 -12.25313 -12.11379 -11.75426 -11.73169 -11.56526 -11.37765 -11.27148 -11.23311 -11.20068 -10.87628 -10.79457 -10.58143 -10.49430 -10.35457 -10.28517 -9.27095 -9.22108 -9.12172 -8.87533 -8.12968 -6.77896 -6.60360 -4.27800 1.66905 2.61681 2.94523 3.03662 3.07373 3.33634 3.72091 3.76000 3.98108 4.19983 4.28734 4.36258 4.37368 4.60812 4.66224 4.79226 4.86905 4.98167 4.98670 5.03105 5.10631 5.12785 5.26740 5.27607 5.33193 5.44179 5.49063 5.53759 5.63891 5.70216 5.81788 5.87178 5.88674 5.95219 5.97295 6.13526 6.19983 6.22407 6.36080 6.75786 6.88563 6.92149 7.16286 7.22896 7.76519 7.86303 8.10871 8.18509 8.48994 8.69631 9.31176 9.59834 10.35371 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.036992 B = 0.001780 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.730262 B =15722.402056 C =16295.606621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.100 4.100 8 H 0.080 0.920 9 C 0.122 3.878 10 N -0.703 5.703 11 C 0.514 3.486 12 O -0.529 6.529 13 C 0.483 3.517 14 O -0.524 6.524 15 N -0.583 5.583 16 C -0.070 4.070 17 C -0.027 4.027 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.047 3.953 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.077 4.077 29 C -0.105 4.105 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.413 0.587 42 H 0.409 0.591 43 H 0.178 0.822 44 H 0.276 0.724 45 H 0.149 0.851 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.848 1.755 -7.818 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.119 4.119 8 H 0.098 0.902 9 C -0.001 4.001 10 N -0.358 5.358 11 C 0.295 3.705 12 O -0.406 6.406 13 C 0.264 3.736 14 O -0.401 6.401 15 N -0.226 5.226 16 C -0.176 4.176 17 C -0.202 4.202 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.455 4.455 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.229 4.229 29 C -0.143 4.143 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.250 0.750 42 H 0.244 0.756 43 H 0.194 0.806 44 H 0.087 0.913 45 H 0.167 0.833 46 H 0.085 0.915 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.461 2.139 -8.221 23.081 hybrid contribution -0.296 -0.463 0.707 0.896 sum -21.757 1.676 -7.513 23.079 Atomic orbital electron populations 1.21830 0.95229 1.01819 1.01641 1.21122 0.95375 0.99701 0.94813 0.91150 1.21610 0.95606 1.00663 0.97360 1.21532 0.95507 1.00923 0.97801 1.21639 1.00778 0.99478 0.93682 1.21437 0.96267 1.00258 0.93906 0.90187 1.21498 0.79066 1.01332 0.98190 1.45736 1.07755 1.55796 1.26465 1.20285 0.88704 0.79361 0.82110 1.90731 1.70217 1.41440 1.38179 1.19667 0.87377 0.82781 0.83780 1.90653 1.68783 1.42275 1.38419 1.42149 1.05523 1.50857 1.24067 1.17259 0.81001 1.16632 1.02665 1.24145 0.90091 1.04718 1.01270 1.78261 1.17019 1.16094 0.97772 1.44554 1.03250 1.28767 1.13901 1.19882 0.82440 1.36283 1.06881 0.86474 1.25664 0.99800 0.95409 0.96234 1.70199 1.25210 1.26421 1.17571 0.85870 0.79258 0.79411 0.79490 1.19091 1.20088 1.19095 1.21305 0.85314 1.13094 1.03182 1.21565 0.93644 1.01238 0.97900 0.92676 0.92757 0.92696 0.91978 0.92149 0.91847 0.91860 0.91506 0.91622 0.91039 0.91041 0.75022 0.75596 0.80564 0.91300 0.83347 0.91512 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.19 37.15 0.34 -0.42 16 2 C -0.09 -0.53 2.72 -90.62 -0.25 -0.77 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 4 C -0.11 -0.67 5.20 -26.74 -0.14 -0.81 16 5 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 6 C -0.12 -0.86 5.08 -26.73 -0.14 -0.99 16 7 C -0.10 -0.70 2.23 -90.60 -0.20 -0.91 16 8 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 9 C 0.12 1.13 5.07 -4.04 -0.02 1.11 16 10 N -0.70 -8.25 5.28 -60.78 -0.32 -8.58 16 11 C 0.51 7.83 7.88 -11.65 -0.09 7.73 16 12 O -0.53 -8.84 16.48 5.48 0.09 -8.75 16 13 C 0.48 8.79 7.85 -11.65 -0.09 8.69 16 14 O -0.52 -10.58 13.62 5.45 0.07 -10.51 16 15 N -0.58 -11.10 5.45 -10.45 -0.06 -11.16 16 16 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 17 C -0.03 -0.69 10.85 -17.02 -0.18 -0.87 16 18 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 19 N -0.14 -3.76 3.73 -11.40 -0.04 -3.80 16 20 C -0.32 -8.45 10.25 -14.82 -0.15 -8.61 16 21 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 22 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 23 N -0.77 -21.18 11.81 55.50 0.66 -20.53 16 24 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 25 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 26 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 28 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 29 C -0.11 -0.64 4.49 -26.70 -0.12 -0.76 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.54 7.18 -51.93 -0.37 0.16 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.41 4.53 7.12 -40.82 -0.29 4.24 16 42 H 0.41 6.73 8.29 -40.82 -0.34 6.39 16 43 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 44 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -32.03 384.94 -7.77 -39.80 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -7.20 Total: 11.90 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.06 Total: -0.67 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.56 Total: -51.24 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.16 Total: -19.26 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.03 -7.77 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746377215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.034 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds