Wall clock time and date at job start Tue Mar 31 2020 19:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.53002 * 109.47106 * 60.00162 * 4 2 1 6 6 C 1.52996 * 109.47346 * 59.99981 * 5 4 2 7 7 C 1.53000 * 109.47328 * 300.00400 * 6 5 4 8 8 H 1.09004 * 109.46724 * 300.00183 * 7 6 5 9 9 C 1.52996 * 109.47518 * 179.97438 * 7 6 5 10 10 N 1.46498 * 109.46721 * 64.99851 * 9 7 6 11 11 C 1.34779 * 120.00066 * 180.02562 * 10 9 7 12 12 O 1.21372 * 119.99834 * 359.97438 * 11 10 9 13 13 C 1.49307 * 120.00334 * 180.02562 * 11 10 9 14 14 O 1.21407 * 120.00007 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99917 * 179.97438 * 13 11 10 16 16 C 1.40301 * 119.99965 * 179.97438 * 15 13 11 17 17 C 1.40719 * 126.09616 * 359.68673 * 16 15 13 18 18 N 1.30880 * 108.37579 * 179.81590 * 17 16 15 19 19 N 1.40067 * 108.43112 * 0.44623 * 18 17 16 20 20 C 1.37295 * 126.05595 * 179.71805 * 19 18 17 21 21 H 1.07994 * 120.00499 * 180.02562 * 20 19 18 22 22 C 1.39009 * 119.99858 * 359.97438 * 20 19 18 23 23 N 1.31287 * 119.99928 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00215 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47039 * 89.99949 * 24 22 20 26 26 H 1.48497 * 109.47189 * 209.99992 * 24 22 20 27 27 H 1.48498 * 109.46879 * 330.00203 * 24 22 20 28 28 C 1.35776 * 126.09852 * 180.02562 * 16 15 13 29 29 C 1.53002 * 109.47233 * 59.99531 * 7 6 5 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 35 35 H 1.08996 * 109.47407 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.46986 * 300.00235 * 5 4 2 37 37 H 1.09000 * 109.46870 * 60.00183 * 6 5 4 38 38 H 1.09001 * 109.47372 * 180.02562 * 6 5 4 39 39 H 1.09000 * 109.47315 * 184.99741 * 9 7 6 40 40 H 1.08994 * 109.47361 * 305.00391 * 9 7 6 41 41 H 0.96998 * 120.00310 * 0.02562 * 10 9 7 42 42 H 0.96998 * 120.00041 * 359.97438 * 15 13 11 43 43 H 1.07999 * 125.81415 * 0.02562 * 17 16 15 44 44 H 0.96999 * 119.99897 * 179.97438 * 23 22 20 45 45 H 1.08004 * 126.25740 * 359.97438 * 28 16 15 46 46 H 1.08993 * 109.47662 * 180.02562 * 29 7 6 47 47 H 1.09000 * 109.46986 * 60.00203 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.5301 -2.1638 1.2491 6 6 2.0401 -2.8850 -0.0002 7 6 1.5301 -2.1637 -1.2494 8 1 0.4400 -2.1637 -1.2493 9 6 2.0405 -2.8845 -2.4987 10 7 1.4568 -4.2268 -2.5606 11 6 1.7661 -5.0496 -3.5823 12 8 2.5279 -4.6784 -4.4512 13 6 1.1708 -6.4174 -3.6458 14 8 0.4085 -6.7886 -2.7769 15 7 1.4798 -7.2400 -4.6678 16 6 0.9208 -8.5255 -4.7272 17 6 0.0328 -9.0875 -3.7913 18 7 -0.2715 -10.2975 -4.1864 19 7 0.4144 -10.5596 -5.3791 20 6 0.3611 -11.7253 -6.1025 21 1 0.9334 -11.8224 -7.0132 22 6 -0.4288 -12.7811 -5.6622 23 7 -1.1241 -12.6633 -4.5549 24 14 -0.5008 -14.3674 -6.6460 25 1 0.5617 -15.2913 -6.1740 26 1 -1.8292 -15.0048 -6.4609 27 1 -0.2920 -14.0671 -8.0853 28 6 1.1453 -9.4515 -5.6945 29 6 2.0400 -0.7212 -1.2494 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 3.1300 -0.7217 1.2489 34 1 1.6767 -0.2074 2.1392 35 1 1.8931 -2.6775 2.1392 36 1 0.4401 -2.1638 1.2491 37 1 3.1301 -2.8849 -0.0002 38 1 1.6764 -3.9125 -0.0004 39 1 1.7521 -2.3215 -3.3863 40 1 3.1268 -2.9624 -2.4549 41 1 0.8477 -4.5233 -1.8664 42 1 2.0886 -6.9433 -5.3622 43 1 -0.3374 -8.6016 -2.9007 44 1 -1.6756 -13.3999 -4.2478 45 1 1.7849 -9.3324 -6.5566 46 1 1.6764 -0.2072 -2.1390 47 1 3.1300 -0.7211 -1.2494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746377219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:37 Heat of formation + Delta-G solvation = -11.401893 kcal Electronic energy + Delta-G solvation = -27968.647456 eV Core-core repulsion = 23959.417961 eV Total energy + Delta-G solvation = -4009.229495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57336 -39.82828 -39.26413 -37.87405 -35.48825 -34.25842 -33.18028 -32.13508 -31.57880 -30.32339 -28.11899 -27.14460 -26.66732 -25.10487 -23.49864 -22.70539 -21.45090 -21.01444 -20.30944 -19.47258 -18.94132 -18.20336 -17.44350 -16.36841 -16.03766 -15.81428 -15.51769 -15.26952 -15.07729 -14.89866 -14.63938 -14.19738 -14.11134 -13.94984 -13.55743 -13.44638 -13.03908 -12.99204 -12.98497 -12.51523 -12.29454 -11.93422 -11.83595 -11.74031 -11.56959 -11.38295 -11.29357 -11.28472 -11.22232 -10.86593 -10.61827 -10.55842 -10.38656 -10.31405 -10.28993 -9.26862 -9.22692 -9.12140 -8.87678 -8.13024 -6.77970 -6.60623 -4.27868 1.66974 2.61977 2.93230 3.03720 3.08583 3.33589 3.72039 3.75764 3.98531 4.22976 4.30061 4.34002 4.37295 4.60988 4.71181 4.82664 4.86682 4.98003 5.01501 5.02790 5.03346 5.14612 5.21318 5.32658 5.36523 5.47326 5.50771 5.60409 5.64785 5.69534 5.83421 5.85221 5.89830 5.97635 6.01198 6.16369 6.19994 6.23353 6.36055 6.75771 6.88731 6.92104 7.16205 7.23020 7.76602 7.86425 8.10884 8.18439 8.48935 8.69562 9.31149 9.59730 10.35190 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.001846 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.488975 B =15161.640218 C =15681.994809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.102 4.102 8 H 0.083 0.917 9 C 0.122 3.878 10 N -0.703 5.703 11 C 0.514 3.486 12 O -0.530 6.530 13 C 0.483 3.517 14 O -0.524 6.524 15 N -0.583 5.583 16 C -0.069 4.069 17 C -0.027 4.027 18 N -0.260 5.260 19 N -0.139 5.139 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.263 1.263 28 C -0.077 4.077 29 C -0.106 4.106 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.413 0.587 42 H 0.409 0.591 43 H 0.178 0.822 44 H 0.276 0.724 45 H 0.149 0.851 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.421 21.782 7.825 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.120 4.120 8 H 0.101 0.899 9 C -0.001 4.001 10 N -0.357 5.357 11 C 0.295 3.705 12 O -0.406 6.406 13 C 0.264 3.736 14 O -0.401 6.401 15 N -0.226 5.226 16 C -0.175 4.175 17 C -0.202 4.202 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.172 4.172 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.187 1.187 28 C -0.229 4.229 29 C -0.144 4.144 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.250 0.750 42 H 0.244 0.756 43 H 0.194 0.806 44 H 0.086 0.914 45 H 0.167 0.833 46 H 0.084 0.916 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.592 20.603 8.219 22.652 hybrid contribution 0.554 0.134 -0.695 0.899 sum 5.146 20.737 7.524 22.652 Atomic orbital electron populations 1.21964 0.95249 1.02309 1.01499 1.21076 0.96019 0.98998 0.94799 0.91258 1.21575 1.00540 0.95763 0.97389 1.21568 1.01165 0.95448 0.97739 1.21631 1.01097 0.99094 0.93698 1.21469 1.01490 0.95208 0.93861 0.89884 1.21506 0.98565 0.81810 0.98232 1.45736 1.48577 1.14916 1.26506 1.20287 0.81724 0.86346 0.82112 1.90732 1.35238 1.76390 1.38214 1.19669 0.84387 0.85773 0.83772 1.90652 1.35692 1.75324 1.38459 1.42151 1.44066 1.12300 1.24086 1.17256 1.11064 0.86527 1.02674 1.24145 1.01067 0.93758 1.01272 1.78264 1.18818 1.14293 0.97752 1.44567 1.23773 1.08244 1.13951 1.19923 1.29862 0.88714 1.06899 0.86434 1.25672 0.95119 1.00114 0.96256 1.70209 1.20068 1.31453 1.17667 0.85801 0.78406 0.80046 0.79767 1.19532 1.20043 1.18738 1.21305 1.08457 0.89891 1.03215 1.21524 1.00864 0.94065 0.97933 0.92896 0.91867 0.92787 0.92027 0.92148 0.91964 0.91537 0.91658 0.91543 0.91064 0.91068 0.75042 0.75595 0.80563 0.91358 0.83346 0.91571 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.50 37.16 0.32 -0.57 16 2 C -0.09 -0.52 3.19 -90.62 -0.29 -0.81 16 3 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.12 -0.67 5.45 -26.73 -0.15 -0.82 16 5 C -0.12 -0.79 5.65 -26.73 -0.15 -0.94 16 6 C -0.12 -0.85 5.08 -26.73 -0.14 -0.98 16 7 C -0.10 -0.71 1.95 -90.62 -0.18 -0.89 16 8 H 0.08 0.59 6.43 -51.93 -0.33 0.26 16 9 C 0.12 1.13 5.06 -4.04 -0.02 1.11 16 10 N -0.70 -8.24 5.28 -60.78 -0.32 -8.56 16 11 C 0.51 7.82 7.88 -11.65 -0.09 7.72 16 12 O -0.53 -8.83 16.48 5.48 0.09 -8.74 16 13 C 0.48 8.78 7.85 -11.65 -0.09 8.68 16 14 O -0.52 -10.57 13.62 5.45 0.07 -10.49 16 15 N -0.58 -11.09 5.45 -10.46 -0.06 -11.15 16 16 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 17 C -0.03 -0.69 10.84 -17.02 -0.18 -0.88 16 18 N -0.26 -7.48 10.39 30.81 0.32 -7.16 16 19 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 20 C -0.32 -8.43 10.25 -14.82 -0.15 -8.58 16 21 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.18 11.81 55.50 0.66 -20.53 16 24 Si 0.94 18.71 29.55 -169.99 -5.02 13.69 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 28 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 29 C -0.11 -0.64 4.73 -26.73 -0.13 -0.77 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 4.81 -51.93 -0.25 0.14 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.43 6.43 -51.93 -0.33 0.10 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.53 7.18 -51.93 -0.37 0.16 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.41 4.52 7.12 -40.82 -0.29 4.23 16 42 H 0.41 6.72 8.29 -40.82 -0.34 6.39 16 43 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 44 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -32.04 377.90 -7.57 -39.62 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -6.85 Total: 12.30 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.11 Total: -0.84 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.56 Total: -51.22 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.16 Total: -19.24 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.04 -7.57 -39.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746377219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.214 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds