Wall clock time and date at job start Tue Mar 31 2020 19:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47108 * 2 1 4 4 C 1.52996 * 109.46955 * 239.99679 * 2 1 3 5 5 C 1.53001 * 109.47176 * 300.00192 * 4 2 1 6 6 C 1.52996 * 109.47365 * 299.99973 * 5 4 2 7 7 C 1.52996 * 109.46951 * 59.99890 * 6 5 4 8 8 H 1.09000 * 109.47145 * 60.00120 * 7 6 5 9 9 C 1.53006 * 109.47102 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.46998 * 295.00080 * 9 7 6 11 11 C 1.34769 * 120.00237 * 180.02562 * 10 9 7 12 12 O 1.21367 * 120.00221 * 359.97438 * 11 10 9 13 13 C 1.49304 * 120.00224 * 180.02562 * 11 10 9 14 14 O 1.21404 * 120.00400 * 359.97438 * 13 11 10 15 15 N 1.34779 * 120.00156 * 179.97438 * 13 11 10 16 16 C 1.40296 * 120.00070 * 179.97438 * 15 13 11 17 17 C 1.40717 * 126.10033 * 0.03246 * 16 15 13 18 18 N 1.30879 * 108.37681 * 179.97438 * 17 16 15 19 19 N 1.40057 * 108.43640 * 359.97438 * 18 17 16 20 20 C 1.37299 * 126.05801 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00069 * 179.97438 * 20 19 18 22 22 C 1.39007 * 119.99760 * 359.97438 * 20 19 18 23 23 N 1.31282 * 119.99858 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99780 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47404 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47052 * 120.00362 * 24 22 20 27 27 H 1.48508 * 109.46874 * 239.99778 * 24 22 20 28 28 C 1.35791 * 126.09760 * 179.71638 * 16 15 13 29 29 C 1.52997 * 109.47350 * 299.99902 * 7 6 5 30 30 H 1.09007 * 109.47132 * 300.00173 * 1 2 3 31 31 H 1.09002 * 109.47044 * 60.00192 * 1 2 3 32 32 H 1.08996 * 109.47552 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47139 * 60.00187 * 4 2 1 34 34 H 1.09000 * 109.47145 * 180.02562 * 4 2 1 35 35 H 1.08993 * 109.47190 * 60.00310 * 5 4 2 36 36 H 1.09007 * 109.46967 * 180.02562 * 5 4 2 37 37 H 1.09006 * 109.47002 * 300.00435 * 6 5 4 38 38 H 1.08997 * 109.47293 * 180.02562 * 6 5 4 39 39 H 1.08993 * 109.46955 * 55.00306 * 9 7 6 40 40 H 1.09000 * 109.47050 * 175.00134 * 9 7 6 41 41 H 0.97010 * 119.99909 * 359.97438 * 10 9 7 42 42 H 0.96996 * 119.99844 * 0.02562 * 15 13 11 43 43 H 1.07999 * 125.81208 * 0.03219 * 17 16 15 44 44 H 0.97001 * 119.99701 * 180.02562 * 23 22 20 45 45 H 1.07999 * 126.25274 * 0.02562 * 28 16 15 46 46 H 1.09004 * 109.47394 * 179.97438 * 29 7 6 47 47 H 1.08990 * 109.47621 * 300.00357 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2491 6 6 2.0398 -2.8851 0.0001 7 6 1.5299 -2.1637 1.2493 8 1 0.4399 -2.1637 1.2493 9 6 2.0404 -2.8847 2.4986 10 7 1.4566 -4.2269 2.5606 11 6 1.7651 -5.0494 3.5827 12 8 2.5269 -4.6783 4.4516 13 6 1.1707 -6.4175 3.6456 14 8 0.4090 -6.7890 2.7763 15 7 1.4796 -7.2402 4.6675 16 6 0.9205 -8.5256 4.7269 17 6 0.0282 -9.0855 3.7940 18 7 -0.2712 -10.2979 4.1857 19 7 0.4148 -10.5602 5.3782 20 6 0.3614 -11.7259 6.1017 21 1 0.9339 -11.8230 7.0123 22 6 -0.4296 -12.7811 5.6621 23 7 -1.1251 -12.6631 4.5549 24 14 -0.5017 -14.3673 6.6460 25 1 0.3674 -14.2467 7.8440 26 1 -1.9010 -14.6213 7.0736 27 1 -0.0294 -15.4948 5.8026 28 6 1.1488 -9.4535 5.6917 29 6 2.0400 -0.7213 1.2493 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 0.4400 -2.1638 -1.2492 36 1 1.8936 -2.6778 -2.1389 37 1 3.1299 -2.8850 0.0001 38 1 1.6768 -3.9128 -0.0001 39 1 3.1266 -2.9625 2.4547 40 1 1.7520 -2.3216 3.3863 41 1 0.8474 -4.5234 1.8663 42 1 2.0878 -6.9433 5.3623 43 1 -0.3453 -8.5982 2.9055 44 1 -1.6773 -13.3993 4.2483 45 1 1.7920 -9.3361 6.5512 46 1 1.6763 -0.2073 2.1391 47 1 3.1299 -0.7213 1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746377220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:39 Heat of formation + Delta-G solvation = -32.508491 kcal Electronic energy + Delta-G solvation = -27969.653515 eV Core-core repulsion = 23959.508769 eV Total energy + Delta-G solvation = -4010.144746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.03777 -41.23758 -40.24717 -39.29631 -36.60395 -35.82084 -34.96116 -32.81627 -32.30522 -32.19667 -29.91665 -27.82831 -27.58421 -26.77678 -24.82038 -23.25155 -22.91511 -22.10421 -21.71831 -21.22219 -19.72512 -19.43789 -19.12530 -17.64857 -17.46115 -17.06934 -16.85921 -16.54655 -16.28762 -15.86073 -15.62553 -15.41221 -15.25323 -14.98455 -14.87014 -14.78181 -14.53656 -14.16675 -13.53759 -13.52308 -13.38591 -13.21388 -12.95896 -12.94267 -12.88979 -12.53759 -12.42677 -12.35062 -12.02721 -11.99035 -11.87037 -11.80893 -11.15480 -11.08560 -10.93460 -10.87715 -10.84309 -10.55365 -10.28221 -10.14447 -8.62568 -8.49304 -6.26918 0.28843 1.28387 1.31703 1.42532 1.60124 1.72039 2.04380 2.11648 2.53486 2.59333 2.94614 3.07336 3.53638 3.62323 3.75995 3.80663 4.17665 4.26920 4.32474 4.39541 4.48141 4.51570 4.52171 4.57023 4.65262 4.72524 4.81174 4.87541 4.95634 4.98160 4.99745 5.06241 5.13374 5.17576 5.20753 5.21962 5.30442 5.31452 5.32100 5.41430 5.48904 5.52163 5.67861 5.90236 6.00833 6.24783 6.48319 6.67115 6.80373 7.07229 7.41055 7.62568 8.50157 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.032761 B = 0.001846 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.479634 B =15161.647468 C =15681.879007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.093 4.093 8 H 0.085 0.915 9 C 0.121 3.879 10 N -0.686 5.686 11 C 0.523 3.477 12 O -0.542 6.542 13 C 0.485 3.515 14 O -0.544 6.544 15 N -0.583 5.583 16 C -0.057 4.057 17 C -0.048 4.048 18 N -0.308 5.308 19 N -0.164 5.164 20 C -0.352 4.352 21 H 0.142 0.858 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.241 1.241 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.074 4.074 29 C -0.104 4.104 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.418 0.582 42 H 0.423 0.577 43 H 0.176 0.824 44 H 0.278 0.722 45 H 0.188 0.812 46 H 0.071 0.929 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 23.109 -6.904 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.111 4.111 8 H 0.103 0.897 9 C -0.001 4.001 10 N -0.339 5.339 11 C 0.303 3.697 12 O -0.420 6.420 13 C 0.267 3.733 14 O -0.422 6.422 15 N -0.227 5.227 16 C -0.163 4.163 17 C -0.224 4.224 18 N -0.139 5.139 19 N 0.068 4.932 20 C -0.484 4.484 21 H 0.159 0.841 22 C -0.218 4.218 23 N -0.449 5.449 24 Si 0.839 3.161 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.225 4.225 29 C -0.142 4.142 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.255 0.745 42 H 0.261 0.739 43 H 0.193 0.807 44 H 0.088 0.912 45 H 0.205 0.795 46 H 0.089 0.911 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.765 21.991 -7.313 23.882 hybrid contribution 0.229 -0.064 0.313 0.393 sum 5.994 21.927 -7.000 23.785 Atomic orbital electron populations 1.21962 0.95332 1.02017 1.01720 1.21071 0.95900 0.99292 0.94413 0.90518 1.21567 1.00594 0.95225 0.97723 1.21556 1.01113 0.95892 0.97260 1.21623 1.01030 0.98652 0.94225 1.21411 1.01511 0.95621 0.92578 0.89718 1.21724 0.98582 0.80297 0.99530 1.45776 1.47640 1.15335 1.25133 1.19637 0.81796 0.85267 0.82972 1.90737 1.36003 1.76262 1.38997 1.20317 0.83441 0.86786 0.82762 1.90644 1.36418 1.76061 1.39058 1.42091 1.44546 1.11002 1.25098 1.17303 1.09463 0.87947 1.01605 1.24250 1.02279 0.93706 1.02125 1.78156 1.20760 1.15629 0.99391 1.44852 1.24709 1.09619 1.13985 1.20699 1.30763 0.89024 1.07873 0.84066 1.26892 0.93999 1.03831 0.97066 1.70383 1.21545 1.32917 1.20036 0.84523 0.79022 0.74407 0.78183 1.16393 1.19724 1.19723 1.22008 1.07545 0.88845 1.04138 1.21517 1.01072 0.93139 0.98425 0.92669 0.92633 0.92392 0.91697 0.91916 0.91603 0.92045 0.91745 0.92580 0.90914 0.90680 0.74485 0.73916 0.80735 0.91242 0.79490 0.91062 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.50 71.98 0.61 -0.91 16 2 C -0.09 -0.83 3.20 -10.79 -0.03 -0.87 16 3 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 4 C -0.11 -1.13 5.45 30.59 0.17 -0.96 16 5 C -0.12 -1.41 5.65 30.59 0.17 -1.24 16 6 C -0.12 -1.55 5.08 30.59 0.16 -1.39 16 7 C -0.09 -1.14 1.95 -10.79 -0.02 -1.16 16 8 H 0.08 1.06 6.43 -2.39 -0.02 1.04 16 9 C 0.12 2.01 5.06 86.38 0.44 2.45 16 10 N -0.69 -15.07 5.28 -464.56 -2.45 -17.52 16 11 C 0.52 15.17 7.88 87.23 0.69 15.86 16 12 O -0.54 -17.10 16.47 -3.30 -0.05 -17.16 16 13 C 0.49 17.27 7.85 87.22 0.69 17.96 16 14 O -0.54 -21.96 13.62 -3.41 -0.05 -22.00 16 15 N -0.58 -21.59 5.45 -305.33 -1.66 -23.25 16 16 C -0.06 -2.63 6.90 37.82 0.26 -2.37 16 17 C -0.05 -2.57 10.84 85.44 0.93 -1.64 16 18 N -0.31 -18.29 10.39 -56.44 -0.59 -18.87 16 19 N -0.16 -9.02 3.73 -189.97 -0.71 -9.73 16 20 C -0.35 -18.50 10.25 84.02 0.86 -17.64 16 21 H 0.14 6.44 7.83 -2.91 -0.02 6.41 16 22 C -0.01 -0.30 5.50 84.96 0.47 0.17 16 23 N -0.82 -46.77 11.81 21.66 0.26 -46.52 16 24 Si 1.02 38.16 29.55 68.60 2.03 40.19 16 25 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 26 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 27 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 28 C -0.07 -3.47 11.50 83.41 0.96 -2.51 16 29 C -0.10 -1.04 4.73 30.60 0.14 -0.89 16 30 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.63 4.81 -2.39 -0.01 0.62 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 36 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.06 0.85 7.18 -2.39 -0.02 0.83 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.42 8.66 7.12 -92.70 -0.66 8.00 16 42 H 0.42 13.21 8.29 -92.71 -0.77 12.44 16 43 H 0.18 9.13 5.92 -2.91 -0.02 9.12 16 44 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.19 6.96 8.06 -2.91 -0.02 6.93 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -70.83 377.90 2.84 -68.00 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: -0.42 Total: 42.02 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 6.48 Total: 4.85 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -5.15 Total: -115.89 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.10 Total: -39.16 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -70.83 2.84 -68.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746377220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.487 kcal (2) G-P(sol) polarization free energy of solvation -70.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds