Wall clock time and date at job start Tue Mar 31 2020 19:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47206 * 2 1 4 4 C 1.53008 * 109.46968 * 240.00422 * 2 1 3 5 5 C 1.53001 * 109.47011 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.47096 * 59.99972 * 5 4 2 7 7 C 1.52994 * 109.46994 * 300.00236 * 6 5 4 8 8 C 1.52998 * 109.47579 * 120.00158 * 2 1 3 9 9 H 1.09003 * 109.47149 * 60.00448 * 8 2 1 10 10 C 1.52998 * 109.47338 * 300.00112 * 8 2 1 11 11 N 1.46498 * 109.47327 * 174.99862 * 10 8 2 12 12 C 1.34779 * 120.00096 * 180.02562 * 11 10 8 13 13 O 1.21364 * 119.99935 * 359.97438 * 12 11 10 14 14 C 1.49307 * 120.00059 * 179.97438 * 12 11 10 15 15 O 1.21408 * 120.00038 * 359.97438 * 14 12 11 16 16 N 1.34771 * 120.00290 * 179.97438 * 14 12 11 17 17 C 1.40288 * 120.00594 * 179.97438 * 16 14 12 18 18 C 1.40727 * 126.09536 * 0.02562 * 17 16 14 19 19 N 1.30877 * 108.37244 * 179.75560 * 18 17 16 20 20 N 1.40058 * 108.43870 * 0.37659 * 19 18 17 21 21 C 1.37299 * 126.05821 * 179.88512 * 20 19 18 22 22 H 1.08001 * 119.99733 * 185.85793 * 21 20 19 23 23 C 1.39007 * 119.99625 * 5.84951 * 21 20 19 24 24 N 1.31279 * 119.99627 * 177.11184 * 23 21 20 25 25 Si 1.86797 * 120.00194 * 357.12036 * 23 21 20 26 26 H 1.48498 * 109.47132 * 179.97438 * 25 23 21 27 27 H 1.48504 * 109.46899 * 299.99318 * 25 23 21 28 28 H 1.48500 * 109.47361 * 59.99777 * 25 23 21 29 29 C 1.35784 * 126.10453 * 179.97438 * 17 16 14 30 30 H 1.08998 * 109.46875 * 299.99146 * 1 2 3 31 31 H 1.08998 * 109.47512 * 59.99896 * 1 2 3 32 32 H 1.09006 * 109.47206 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46712 * 60.00058 * 4 2 1 34 34 H 1.08998 * 109.46912 * 299.99502 * 4 2 1 35 35 H 1.08994 * 109.47472 * 300.00251 * 5 4 2 36 36 H 1.08994 * 109.47106 * 179.97438 * 5 4 2 37 37 H 1.08991 * 109.47193 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.46523 * 59.99575 * 6 5 4 39 39 H 1.09007 * 109.47370 * 299.99289 * 7 6 5 40 40 H 1.08998 * 109.47044 * 180.02562 * 7 6 5 41 41 H 1.08998 * 109.46868 * 54.99726 * 10 8 2 42 42 H 1.09003 * 109.47114 * 295.00046 * 10 8 2 43 43 H 0.97000 * 120.00060 * 359.97438 * 11 10 8 44 44 H 0.97000 * 119.99576 * 0.02562 * 16 14 12 45 45 H 1.07998 * 125.81480 * 359.97438 * 18 17 16 46 46 H 0.97003 * 120.00387 * 355.60540 * 24 23 21 47 47 H 1.08005 * 126.24805 * 0.02568 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7205 1.2488 8 6 2.0401 -0.7213 1.2492 9 1 1.6768 -1.7490 1.2491 10 6 1.5301 -0.0001 2.4985 11 7 1.9178 -0.7568 3.6915 12 6 1.5738 -0.3084 4.9152 13 8 0.9434 0.7224 5.0286 14 6 1.9684 -1.0799 6.1311 15 8 2.5987 -2.1113 6.0175 16 7 1.6249 -0.6313 7.3546 17 6 1.9952 -1.3564 8.4971 18 6 2.7224 -2.5611 8.5149 19 7 2.8778 -2.9307 9.7607 20 7 2.2519 -1.9865 10.5844 21 6 2.1932 -2.0228 11.9556 22 1 1.6034 -1.2930 12.4903 23 6 2.8928 -2.9990 12.6556 24 7 2.8826 -2.9995 13.9683 25 14 3.8474 -4.3098 11.7283 26 1 4.5014 -5.2248 12.6980 27 1 2.9173 -5.0832 10.8670 28 1 4.8829 -3.6631 10.8829 29 6 1.7167 -1.0206 9.7830 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6766 -0.2072 -2.1392 34 1 1.6767 -1.7489 -1.2494 35 1 3.9330 0.3071 -1.2498 36 1 3.9333 -1.2348 -2.1394 37 1 5.1704 -1.4417 -0.0009 38 1 3.7174 -2.4694 -0.0003 39 1 3.9335 0.3073 1.2487 40 1 3.9345 -1.2339 2.1387 41 1 0.4438 0.0781 2.4549 42 1 1.9647 0.9985 2.5444 43 1 2.4214 -1.5808 3.6009 44 1 1.1210 0.1926 7.4453 45 1 3.0926 -3.0887 7.6483 46 1 2.4406 -2.2831 14.4503 47 1 1.1706 -0.1486 10.1113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746382283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:38 Heat of formation + Delta-G solvation = -25.084181 kcal Electronic energy + Delta-G solvation = -28144.588068 eV Core-core repulsion = 24134.765264 eV Total energy + Delta-G solvation = -4009.822804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78298 -40.07816 -39.37983 -38.06374 -35.42972 -34.42430 -33.47421 -33.12251 -31.41289 -30.77097 -28.68637 -27.49496 -26.18433 -24.91728 -23.59413 -22.10434 -21.42375 -21.25805 -20.48703 -20.05682 -19.83604 -18.39846 -17.92246 -16.67904 -16.27193 -15.96740 -15.61412 -15.33277 -15.08786 -14.86111 -14.69744 -14.47975 -14.09802 -13.94754 -13.62552 -13.53807 -13.38358 -13.32297 -12.96099 -12.49731 -12.47614 -12.26364 -12.19596 -11.93735 -11.90736 -11.42459 -11.34734 -11.24755 -10.99193 -10.85221 -10.84353 -10.45430 -10.39665 -10.24537 -9.96686 -9.56089 -9.34385 -9.32762 -8.61467 -8.36874 -7.38778 -7.15599 -4.54657 1.50735 2.46342 2.88992 3.30088 3.52554 3.69813 3.70363 3.88325 3.97350 4.14892 4.17822 4.23876 4.29066 4.33160 4.61876 4.72387 4.76703 4.85124 4.87731 4.96762 5.02969 5.06425 5.10746 5.23495 5.35845 5.40908 5.43520 5.54996 5.60513 5.67311 5.75113 5.79591 5.83743 5.88762 5.91409 5.94662 5.99575 6.07045 6.14217 6.45133 6.61801 6.66441 7.07506 7.29204 7.54284 7.70730 7.89129 7.95740 8.18724 8.39980 8.83784 9.09865 10.06326 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.002061 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.818516 B =13581.673582 C =14355.364143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.082 4.082 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.095 4.095 9 H 0.080 0.920 10 C 0.119 3.881 11 N -0.702 5.702 12 C 0.514 3.486 13 O -0.527 6.527 14 C 0.487 3.513 15 O -0.523 6.523 16 N -0.586 5.586 17 C -0.061 4.061 18 C 0.013 3.987 19 N -0.360 5.360 20 N -0.144 5.144 21 C -0.376 4.376 22 H 0.116 0.884 23 C 0.038 3.962 24 N -0.827 5.827 25 Si 1.125 2.875 26 H -0.314 1.314 27 H -0.278 1.278 28 H -0.279 1.279 29 C -0.056 4.056 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.413 0.587 44 H 0.413 0.587 45 H 0.187 0.813 46 H 0.281 0.719 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 6.418 -28.345 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.101 4.101 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.114 4.114 9 H 0.099 0.901 10 C -0.004 4.004 11 N -0.356 5.356 12 C 0.295 3.705 13 O -0.403 6.403 14 C 0.268 3.732 15 O -0.400 6.400 16 N -0.229 5.229 17 C -0.167 4.167 18 C -0.159 4.159 19 N -0.194 5.194 20 N 0.091 4.909 21 C -0.508 4.508 22 H 0.133 0.867 23 C -0.178 4.178 24 N -0.454 5.454 25 Si 0.956 3.044 26 H -0.245 1.245 27 H -0.205 1.205 28 H -0.206 1.206 29 C -0.209 4.209 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.250 0.750 44 H 0.248 0.752 45 H 0.203 0.797 46 H 0.092 0.908 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.640 4.250 -27.272 27.608 hybrid contribution -1.550 2.388 -0.568 2.903 sum -2.190 6.638 -27.840 28.704 Atomic orbital electron populations 1.21952 0.95026 1.02149 1.02063 1.21072 0.95591 0.99677 0.93776 0.90821 1.21586 0.95522 1.00760 0.97199 1.21552 0.95630 1.00809 0.97857 1.21529 1.00388 0.99475 0.94341 1.21647 0.94334 1.01362 0.98269 1.21466 0.96097 1.00360 0.93441 0.90139 1.21625 1.00676 0.95423 0.82689 1.45743 1.56754 1.28172 1.04931 1.20172 0.80145 0.85337 0.84815 1.90744 1.38936 1.23823 1.86805 1.19737 0.82924 0.86359 0.84143 1.90646 1.39696 1.23779 1.85898 1.42132 1.52138 1.25384 1.03284 1.17119 1.15409 0.99350 0.84775 1.23724 1.01757 0.95671 0.94758 1.76109 1.26153 1.15850 1.01321 1.44771 1.28797 1.11783 1.05543 1.21224 1.33568 1.19611 0.76405 0.86661 1.27047 0.95160 0.99871 0.95677 1.70908 1.35989 1.32074 1.06403 0.82484 0.76644 0.73866 0.71429 1.24498 1.20477 1.20621 1.21351 1.11632 0.98934 0.88968 0.92075 0.92543 0.92503 0.91899 0.91852 0.92003 0.92097 0.91877 0.91858 0.91607 0.91502 0.90571 0.91030 0.75034 0.75196 0.79674 0.90847 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.85 37.16 0.33 -0.54 16 2 C -0.08 -0.46 2.25 -90.62 -0.20 -0.67 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -0.59 5.20 -26.73 -0.14 -0.73 16 5 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 6 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 7 C -0.12 -0.78 5.08 -26.71 -0.14 -0.92 16 8 C -0.09 -0.61 1.76 -90.60 -0.16 -0.77 16 9 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 10 C 0.12 1.01 4.85 -4.04 -0.02 0.99 16 11 N -0.70 -7.48 5.28 -60.78 -0.32 -7.80 16 12 C 0.51 7.17 7.88 -11.65 -0.09 7.08 16 13 O -0.53 -8.19 16.47 5.48 0.09 -8.10 16 14 C 0.49 8.05 7.85 -11.66 -0.09 7.96 16 15 O -0.52 -9.56 13.62 5.45 0.07 -9.49 16 16 N -0.59 -10.14 5.45 -10.46 -0.06 -10.20 16 17 C -0.06 -1.30 6.90 -83.93 -0.58 -1.88 16 18 C 0.01 0.30 10.85 -17.02 -0.18 0.12 16 19 N -0.36 -9.36 7.14 30.81 0.22 -9.14 16 20 N -0.14 -3.71 3.69 -11.40 -0.04 -3.75 16 21 C -0.38 -10.01 10.59 -14.82 -0.16 -10.17 16 22 H 0.12 2.97 8.05 -52.49 -0.42 2.55 16 23 C 0.04 1.03 5.50 -17.50 -0.10 0.93 16 24 N -0.83 -22.55 13.68 55.50 0.76 -21.80 16 25 Si 1.12 28.19 25.65 -169.99 -4.36 23.83 16 26 H -0.31 -7.68 7.11 56.52 0.40 -7.28 16 27 H -0.28 -7.03 6.98 56.52 0.39 -6.63 16 28 H -0.28 -7.07 6.97 56.52 0.39 -6.68 16 29 C -0.06 -1.23 11.50 -16.38 -0.19 -1.42 16 30 H 0.06 0.37 6.32 -51.93 -0.33 0.05 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.48 7.19 -51.93 -0.37 0.11 16 41 H 0.08 0.67 6.17 -51.93 -0.32 0.35 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.41 4.06 7.13 -40.82 -0.29 3.77 16 44 H 0.41 6.14 8.29 -40.82 -0.34 5.80 16 45 H 0.19 4.13 5.92 -52.49 -0.31 3.82 16 46 H 0.28 7.26 8.72 -40.82 -0.36 6.90 16 47 H 0.16 2.90 8.06 -52.48 -0.42 2.47 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -30.58 376.49 -7.04 -37.62 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.05 Total: 4.83 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.03 Total: -1.68 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.56 Total: -52.69 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.16 Total: -17.58 kcal Atomic # 14 Polarization: 28.19 SS G_CDS: -4.36 Total: 23.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.58 -7.04 -37.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746382283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.537 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds