Wall clock time and date at job start Tue Mar 31 2020 19:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47206 * 2 1 4 4 C 1.53008 * 109.46968 * 240.00422 * 2 1 3 5 5 C 1.53001 * 109.47011 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.47096 * 59.99972 * 5 4 2 7 7 C 1.52994 * 109.46994 * 300.00236 * 6 5 4 8 8 C 1.52998 * 109.47579 * 120.00158 * 2 1 3 9 9 H 1.09003 * 109.47149 * 60.00448 * 8 2 1 10 10 C 1.52998 * 109.47338 * 300.00112 * 8 2 1 11 11 N 1.46498 * 109.47327 * 174.99862 * 10 8 2 12 12 C 1.34779 * 120.00096 * 180.02562 * 11 10 8 13 13 O 1.21364 * 119.99935 * 359.97438 * 12 11 10 14 14 C 1.49307 * 120.00059 * 179.97438 * 12 11 10 15 15 O 1.21408 * 120.00038 * 359.97438 * 14 12 11 16 16 N 1.34771 * 120.00290 * 179.97438 * 14 12 11 17 17 C 1.40288 * 120.00594 * 179.97438 * 16 14 12 18 18 C 1.40727 * 126.09536 * 0.02562 * 17 16 14 19 19 N 1.30877 * 108.37244 * 179.75560 * 18 17 16 20 20 N 1.40058 * 108.43870 * 0.37659 * 19 18 17 21 21 C 1.37299 * 126.05821 * 179.88512 * 20 19 18 22 22 H 1.08001 * 119.99733 * 185.85793 * 21 20 19 23 23 C 1.39007 * 119.99625 * 5.84951 * 21 20 19 24 24 N 1.31279 * 119.99627 * 177.11184 * 23 21 20 25 25 Si 1.86797 * 120.00194 * 357.12036 * 23 21 20 26 26 H 1.48498 * 109.47132 * 179.97438 * 25 23 21 27 27 H 1.48504 * 109.46899 * 299.99318 * 25 23 21 28 28 H 1.48500 * 109.47361 * 59.99777 * 25 23 21 29 29 C 1.35784 * 126.10453 * 179.97438 * 17 16 14 30 30 H 1.08998 * 109.46875 * 299.99146 * 1 2 3 31 31 H 1.08998 * 109.47512 * 59.99896 * 1 2 3 32 32 H 1.09006 * 109.47206 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46712 * 60.00058 * 4 2 1 34 34 H 1.08998 * 109.46912 * 299.99502 * 4 2 1 35 35 H 1.08994 * 109.47472 * 300.00251 * 5 4 2 36 36 H 1.08994 * 109.47106 * 179.97438 * 5 4 2 37 37 H 1.08991 * 109.47193 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.46523 * 59.99575 * 6 5 4 39 39 H 1.09007 * 109.47370 * 299.99289 * 7 6 5 40 40 H 1.08998 * 109.47044 * 180.02562 * 7 6 5 41 41 H 1.08998 * 109.46868 * 54.99726 * 10 8 2 42 42 H 1.09003 * 109.47114 * 295.00046 * 10 8 2 43 43 H 0.97000 * 120.00060 * 359.97438 * 11 10 8 44 44 H 0.97000 * 119.99576 * 0.02562 * 16 14 12 45 45 H 1.07998 * 125.81480 * 359.97438 * 18 17 16 46 46 H 0.97003 * 120.00387 * 355.60540 * 24 23 21 47 47 H 1.08005 * 126.24805 * 0.02568 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7205 1.2488 8 6 2.0401 -0.7213 1.2492 9 1 1.6768 -1.7490 1.2491 10 6 1.5301 -0.0001 2.4985 11 7 1.9178 -0.7568 3.6915 12 6 1.5738 -0.3084 4.9152 13 8 0.9434 0.7224 5.0286 14 6 1.9684 -1.0799 6.1311 15 8 2.5987 -2.1113 6.0175 16 7 1.6249 -0.6313 7.3546 17 6 1.9952 -1.3564 8.4971 18 6 2.7224 -2.5611 8.5149 19 7 2.8778 -2.9307 9.7607 20 7 2.2519 -1.9865 10.5844 21 6 2.1932 -2.0228 11.9556 22 1 1.6034 -1.2930 12.4903 23 6 2.8928 -2.9990 12.6556 24 7 2.8826 -2.9995 13.9683 25 14 3.8474 -4.3098 11.7283 26 1 4.5014 -5.2248 12.6980 27 1 2.9173 -5.0832 10.8670 28 1 4.8829 -3.6631 10.8829 29 6 1.7167 -1.0206 9.7830 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6766 -0.2072 -2.1392 34 1 1.6767 -1.7489 -1.2494 35 1 3.9330 0.3071 -1.2498 36 1 3.9333 -1.2348 -2.1394 37 1 5.1704 -1.4417 -0.0009 38 1 3.7174 -2.4694 -0.0003 39 1 3.9335 0.3073 1.2487 40 1 3.9345 -1.2339 2.1387 41 1 0.4438 0.0781 2.4549 42 1 1.9647 0.9985 2.5444 43 1 2.4214 -1.5808 3.6009 44 1 1.1210 0.1926 7.4453 45 1 3.0926 -3.0887 7.6483 46 1 2.4406 -2.2831 14.4503 47 1 1.1706 -0.1486 10.1113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746382283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:37 Heat of formation + Delta-G solvation = -44.632328 kcal Electronic energy + Delta-G solvation = -28145.435739 eV Core-core repulsion = 24134.765264 eV Total energy + Delta-G solvation = -4010.670475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.27817 -41.45055 -40.20406 -39.30286 -36.58848 -35.86882 -35.19651 -33.62514 -32.68086 -32.05697 -30.41360 -28.23376 -27.06256 -26.30840 -24.89955 -23.20279 -22.56184 -21.96094 -21.80907 -21.45565 -20.64563 -20.03357 -19.33009 -18.20551 -17.69523 -17.10556 -16.71570 -16.53286 -16.05597 -15.84127 -15.60590 -15.47998 -15.32994 -15.24111 -15.14137 -14.88665 -14.65576 -14.41115 -14.13950 -13.64537 -13.54791 -13.03111 -12.88999 -12.84308 -12.80655 -12.68279 -12.59203 -12.36776 -12.00874 -11.93861 -11.92636 -11.72861 -11.50039 -11.30951 -10.97067 -10.90611 -10.66885 -10.51730 -10.33724 -10.25275 -9.40292 -8.88697 -6.54998 0.23794 1.05172 1.25826 1.51638 1.69964 1.83104 1.91257 2.19502 2.32011 2.37923 2.76877 2.85158 3.46168 3.60729 3.73254 3.79542 4.12087 4.15539 4.24921 4.26148 4.32473 4.46060 4.52681 4.59841 4.62248 4.70358 4.75006 4.79534 4.79758 4.88342 4.95761 5.08359 5.08734 5.11615 5.14276 5.23077 5.30866 5.32620 5.34871 5.39540 5.46684 5.48301 5.64516 5.71126 5.94369 6.07839 6.31057 6.40016 6.75407 6.95802 6.97507 7.19575 8.07166 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.002061 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.818516 B =13581.673582 C =14355.364143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.086 4.086 9 H 0.083 0.917 10 C 0.118 3.882 11 N -0.685 5.685 12 C 0.522 3.478 13 O -0.542 6.542 14 C 0.492 3.508 15 O -0.538 6.538 16 N -0.586 5.586 17 C -0.045 4.045 18 C 0.004 3.996 19 N -0.387 5.387 20 N -0.177 5.177 21 C -0.392 4.392 22 H 0.117 0.883 23 C 0.008 3.992 24 N -0.855 5.855 25 Si 1.155 2.845 26 H -0.309 1.309 27 H -0.286 1.286 28 H -0.288 1.288 29 C -0.038 4.038 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.418 0.582 44 H 0.426 0.574 45 H 0.196 0.804 46 H 0.281 0.719 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 7.370 -31.258 32.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.105 4.105 9 H 0.101 0.899 10 C -0.004 4.004 11 N -0.338 5.338 12 C 0.302 3.698 13 O -0.419 6.419 14 C 0.274 3.726 15 O -0.415 6.415 16 N -0.231 5.231 17 C -0.150 4.150 18 C -0.170 4.170 19 N -0.221 5.221 20 N 0.056 4.944 21 C -0.523 4.523 22 H 0.134 0.866 23 C -0.203 4.203 24 N -0.484 5.484 25 Si 0.986 3.014 26 H -0.240 1.240 27 H -0.213 1.213 28 H -0.215 1.215 29 C -0.190 4.190 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.256 0.744 44 H 0.265 0.735 45 H 0.212 0.788 46 H 0.092 0.908 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.149 5.206 -30.198 30.665 hybrid contribution -1.437 2.195 -0.033 2.624 sum -2.586 7.401 -30.231 31.231 Atomic orbital electron populations 1.21944 0.94882 1.02159 1.02138 1.21049 0.95643 0.99631 0.93461 0.90763 1.21569 0.95369 1.00751 0.97142 1.21547 0.95716 1.00776 0.97708 1.21521 1.00414 0.99443 0.94292 1.21640 0.94326 1.01273 0.98354 1.21414 0.95979 1.00316 0.92809 0.89893 1.21805 1.00891 0.95383 0.82317 1.45771 1.55384 1.28134 1.04507 1.19623 0.80487 0.84934 0.84749 1.90754 1.39975 1.24333 1.86864 1.20282 0.81659 0.86016 0.84651 1.90639 1.40027 1.24573 1.86282 1.42091 1.52795 1.25789 1.02453 1.17166 1.13506 0.98469 0.85891 1.24037 1.02005 0.96611 0.94304 1.75985 1.26735 1.17026 1.02376 1.44786 1.31108 1.13112 1.05424 1.21166 1.34042 1.19899 0.77144 0.86596 1.27508 0.95832 1.00948 0.96007 1.70906 1.37908 1.32931 1.06652 0.82035 0.75736 0.73007 0.70630 1.23997 1.21327 1.21526 1.22072 1.09398 0.98686 0.88878 0.92615 0.91891 0.92517 0.91215 0.91874 0.92004 0.91586 0.91897 0.91873 0.91759 0.92229 0.90359 0.91036 0.74376 0.73550 0.78782 0.90841 0.79138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.85 71.98 0.64 -0.77 16 2 C -0.08 -0.72 2.25 -10.79 -0.02 -0.74 16 3 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 4 C -0.11 -0.90 5.20 30.60 0.16 -0.74 16 5 C -0.12 -1.03 5.92 30.60 0.18 -0.85 16 6 C -0.12 -1.19 5.92 30.59 0.18 -1.01 16 7 C -0.12 -1.34 5.08 30.61 0.16 -1.18 16 8 C -0.09 -0.93 1.76 -10.78 -0.02 -0.95 16 9 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 10 C 0.12 1.74 4.85 86.38 0.42 2.16 16 11 N -0.68 -13.00 5.28 -464.56 -2.45 -15.45 16 12 C 0.52 13.28 7.88 87.22 0.69 13.97 16 13 O -0.54 -15.45 16.47 -3.29 -0.05 -15.51 16 14 C 0.49 15.09 7.85 87.23 0.69 15.78 16 15 O -0.54 -18.54 13.62 -3.43 -0.05 -18.59 16 16 N -0.59 -18.72 5.45 -305.34 -1.66 -20.38 16 17 C -0.04 -1.79 6.90 37.83 0.26 -1.53 16 18 C 0.00 0.17 10.85 85.44 0.93 1.10 16 19 N -0.39 -19.95 7.14 -56.43 -0.40 -20.36 16 20 N -0.18 -9.02 3.69 -189.97 -0.70 -9.72 16 21 C -0.39 -20.97 10.59 84.02 0.89 -20.08 16 22 H 0.12 6.02 8.05 -2.91 -0.02 5.99 16 23 C 0.01 0.44 5.50 84.96 0.47 0.91 16 24 N -0.86 -47.48 13.68 21.66 0.30 -47.19 16 25 Si 1.16 58.19 25.65 68.60 1.76 59.95 16 26 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 27 H -0.29 -14.54 6.98 99.48 0.69 -13.84 16 28 H -0.29 -14.66 6.97 99.48 0.69 -13.96 16 29 C -0.04 -1.58 11.50 83.41 0.96 -0.62 16 30 H 0.05 0.57 6.32 -2.39 -0.02 0.55 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.06 0.76 7.19 -2.39 -0.02 0.74 16 41 H 0.08 1.19 6.17 -2.39 -0.01 1.18 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.42 7.26 7.13 -92.71 -0.66 6.60 16 44 H 0.43 11.40 8.29 -92.71 -0.77 10.63 16 45 H 0.20 8.40 5.92 -2.91 -0.02 8.38 16 46 H 0.28 14.87 8.72 -92.71 -0.81 14.06 16 47 H 0.19 6.47 8.06 -2.91 -0.02 6.45 16 Total: -1.00 -64.57 376.49 2.81 -61.76 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.49 Total: 20.06 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.57 Total: 5.43 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -4.92 Total: -113.10 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.10 Total: -34.10 kcal Atomic # 14 Polarization: 58.19 SS G_CDS: 1.76 Total: 59.95 kcal Total: -64.57 2.81 -61.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746382283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.123 kcal (2) G-P(sol) polarization free energy of solvation -64.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds