Wall clock time and date at job start Tue Mar 31 2020 19:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46705 * 2 1 4 4 C 1.52992 * 109.47472 * 239.99987 * 2 1 3 5 5 C 1.53006 * 109.47197 * 179.97438 * 4 2 1 6 6 C 1.52991 * 109.47133 * 60.00006 * 5 4 2 7 7 H 1.08999 * 109.47515 * 60.00180 * 6 5 4 8 8 N 1.46507 * 109.47124 * 180.02562 * 6 5 4 9 9 C 1.34777 * 119.99904 * 274.99776 * 8 6 5 10 10 O 1.21366 * 119.99864 * 0.02562 * 9 8 6 11 11 C 1.49305 * 119.99881 * 179.97438 * 9 8 6 12 12 O 1.21407 * 119.99990 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99885 * 180.02562 * 11 9 8 14 14 C 1.40294 * 119.99797 * 180.02562 * 13 11 9 15 15 C 1.40716 * 126.09970 * 359.96994 * 14 13 11 16 16 N 1.30884 * 108.37733 * 180.02562 * 15 14 13 17 17 N 1.40063 * 108.43386 * 0.02562 * 16 15 14 18 18 C 1.37295 * 126.05650 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99637 * 180.02562 * 18 17 16 20 20 C 1.39003 * 119.99653 * 0.02809 * 18 17 16 21 21 N 1.31283 * 120.00365 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99631 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47519 * 90.00153 * 22 20 18 24 24 H 1.48500 * 109.47371 * 209.99952 * 22 20 18 25 25 H 1.48503 * 109.47485 * 329.99571 * 22 20 18 26 26 C 1.35790 * 126.09712 * 180.24264 * 14 13 11 27 27 C 1.53001 * 109.47435 * 299.99862 * 6 5 4 28 28 H 1.08992 * 109.47673 * 179.97438 * 27 6 5 29 29 C 1.53005 * 109.47187 * 300.00495 * 27 6 5 30 30 C 1.53003 * 109.47174 * 119.99560 * 2 1 3 31 31 H 1.09002 * 109.47139 * 299.99585 * 1 2 3 32 32 H 1.08995 * 109.47120 * 60.00736 * 1 2 3 33 33 H 1.09007 * 109.46705 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47489 * 300.00047 * 4 2 1 35 35 H 1.09004 * 109.47587 * 59.99722 * 4 2 1 36 36 H 1.08999 * 109.46774 * 299.99732 * 5 4 2 37 37 H 1.09002 * 109.46863 * 180.02562 * 5 4 2 38 38 H 0.96997 * 119.99748 * 94.99749 * 8 6 5 39 39 H 0.96997 * 120.00343 * 359.97438 * 13 11 9 40 40 H 1.07995 * 125.81565 * 359.96758 * 15 14 13 41 41 H 0.96998 * 120.00141 * 179.97438 * 21 20 18 42 42 H 1.07995 * 126.25425 * 0.02562 * 26 14 13 43 43 H 1.09004 * 109.46987 * 59.99032 * 29 27 6 44 44 H 1.08993 * 109.47033 * 179.97438 * 29 27 6 45 45 H 1.09004 * 109.46582 * 299.99547 * 29 27 6 46 46 H 1.09007 * 109.46945 * 60.00587 * 30 2 1 47 47 H 1.08998 * 109.47338 * 300.00269 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5701 -0.7206 -1.2494 6 6 4.0806 -1.4414 -0.0002 7 1 3.7177 -2.4692 0.0001 8 7 5.5456 -1.4403 -0.0002 9 6 6.2203 -2.3960 -0.6696 10 8 5.6141 -3.2571 -1.2728 11 6 7.7133 -2.3945 -0.6700 12 8 8.3197 -1.5327 -0.0669 13 7 8.3879 -3.3498 -1.3398 14 6 9.7909 -3.3488 -1.3398 15 6 10.6192 -2.4167 -0.6877 16 7 11.8662 -2.7418 -0.9166 17 7 11.8845 -3.8886 -1.7205 18 6 13.0049 -4.5376 -2.1770 19 1 12.9050 -5.4180 -2.7946 20 6 14.2678 -4.0616 -1.8443 21 7 14.3893 -2.9912 -1.0939 22 14 15.7922 -4.9452 -2.4648 23 1 16.1954 -4.3756 -3.7756 24 1 16.8974 -4.7707 -1.4884 25 1 15.4959 -6.3916 -2.6236 26 6 10.5916 -4.2440 -1.9732 27 6 3.5706 -0.7202 1.2491 28 1 3.9338 -1.2340 2.1390 29 6 4.0799 0.7226 1.2487 30 6 2.0400 -0.7212 1.2493 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.9330 0.3072 -1.2497 37 1 3.9335 -1.2340 -2.1396 38 1 6.0301 -0.7518 0.4817 39 1 7.9035 -4.0386 -1.8213 40 1 10.2833 -1.5757 -0.0994 41 1 15.2705 -2.6593 -0.8615 42 1 10.2649 -5.0843 -2.5677 43 1 3.7163 1.2361 0.3587 44 1 3.7162 1.2364 2.1385 45 1 5.1700 0.7229 1.2485 46 1 1.6767 -1.7489 1.2493 47 1 1.6767 -0.2073 2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746405682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:46 Heat of formation + Delta-G solvation = -7.173695 kcal Electronic energy + Delta-G solvation = -28400.000295 eV Core-core repulsion = 24390.954148 eV Total energy + Delta-G solvation = -4009.046147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.79952 -39.91103 -39.08491 -37.76613 -35.19371 -34.21977 -33.18469 -32.44390 -31.25842 -30.32063 -28.10068 -27.20674 -26.66130 -25.17549 -23.72001 -22.70669 -21.40690 -20.95465 -20.23686 -19.51292 -19.17092 -18.06716 -17.44684 -16.54694 -15.95794 -15.57755 -15.49570 -15.16985 -15.07942 -14.84155 -14.52524 -14.17726 -13.97145 -13.69116 -13.61302 -13.26418 -13.04215 -12.98938 -12.91423 -12.57064 -12.34737 -11.95546 -11.74749 -11.72240 -11.57105 -11.39452 -11.29375 -11.25393 -11.16589 -10.92702 -10.75535 -10.55790 -10.41049 -10.37472 -10.28810 -9.23660 -9.21295 -9.09993 -8.87476 -8.12914 -6.77801 -6.60566 -4.27846 1.67357 2.61667 2.93255 3.03741 3.08580 3.33647 3.72049 3.75510 3.97330 4.27973 4.30543 4.37590 4.47853 4.61411 4.65623 4.81803 4.90527 4.98060 5.00819 5.02120 5.14388 5.18559 5.27278 5.31789 5.41029 5.49467 5.56745 5.59795 5.66995 5.74754 5.82651 5.86617 5.94262 5.95691 6.07232 6.20164 6.21421 6.30375 6.36173 6.76159 6.88784 6.92681 7.16274 7.25623 7.77231 7.87591 8.11567 8.18568 8.49221 8.69724 9.31210 9.59847 10.35254 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.042004 B = 0.001936 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.439643 B =14458.909032 C =14856.339142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.133 4.133 6 C 0.150 3.850 7 H 0.090 0.910 8 N -0.701 5.701 9 C 0.516 3.484 10 O -0.529 6.529 11 C 0.483 3.517 12 O -0.524 6.524 13 N -0.583 5.583 14 C -0.069 4.069 15 C -0.027 4.027 16 N -0.261 5.261 17 N -0.138 5.138 18 C -0.322 4.322 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.936 3.064 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.263 1.263 26 C -0.077 4.077 27 C -0.100 4.100 28 H 0.078 0.922 29 C -0.156 4.156 30 C -0.105 4.105 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.412 0.588 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.090 4.861 2.478 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.172 4.172 6 C 0.046 3.954 7 H 0.108 0.892 8 N -0.355 5.355 9 C 0.297 3.703 10 O -0.405 6.405 11 C 0.263 3.737 12 O -0.401 6.401 13 N -0.226 5.226 14 C -0.175 4.175 15 C -0.202 4.202 16 N -0.091 5.091 17 N 0.095 4.905 18 C -0.454 4.454 19 H 0.136 0.864 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.760 3.240 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.187 1.187 26 C -0.229 4.229 27 C -0.118 4.118 28 H 0.097 0.903 29 C -0.213 4.213 30 C -0.143 4.143 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.249 0.751 39 H 0.244 0.756 40 H 0.194 0.806 41 H 0.086 0.914 42 H 0.166 0.834 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.679 5.296 2.799 22.491 hybrid contribution -0.237 -0.688 -0.493 0.879 sum -21.916 4.608 2.306 22.514 Atomic orbital electron populations 1.21827 0.95263 1.01822 1.01570 1.21231 0.95368 1.00061 0.94884 0.90722 1.21542 0.94699 1.00977 0.97575 1.21978 0.95798 1.01278 0.98133 1.21059 0.78586 1.00818 0.94979 0.89165 1.45894 1.07094 1.30189 1.52301 1.20299 0.88748 0.81808 0.79458 1.90723 1.70219 1.36974 1.42558 1.19694 0.87472 0.83777 0.82712 1.90651 1.68850 1.37089 1.43542 1.42151 1.05099 1.27557 1.47799 1.17258 0.80721 1.04663 1.14873 1.24143 0.89969 1.01552 1.04579 1.78264 1.16956 1.00464 1.13447 1.44565 1.03020 1.15696 1.27242 1.19924 0.81962 1.11041 1.32486 0.86435 1.25666 0.99835 0.95978 0.95662 1.70206 1.24993 1.17761 1.26438 0.85804 0.79639 0.79714 0.78875 1.19532 1.20040 1.18739 1.21307 0.85094 1.04584 1.11899 1.21389 0.96173 0.96857 0.97427 0.90318 1.21995 1.01154 0.95679 1.02482 1.21590 0.93717 1.01059 0.97929 0.92776 0.92738 0.92692 0.91690 0.91693 0.91216 0.91204 0.75058 0.75607 0.80574 0.91356 0.83354 0.91626 0.92204 0.92417 0.91603 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.10 -0.60 2.45 -90.62 -0.22 -0.82 16 3 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 4 C -0.11 -0.80 5.20 -26.73 -0.14 -0.94 16 5 C -0.13 -1.22 5.22 -26.73 -0.14 -1.36 16 6 C 0.15 1.46 2.15 -67.93 -0.15 1.31 16 7 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 8 N -0.70 -8.40 4.99 -54.28 -0.27 -8.67 16 9 C 0.52 7.86 7.85 -11.65 -0.09 7.77 16 10 O -0.53 -8.73 16.14 5.48 0.09 -8.64 16 11 C 0.48 8.80 7.85 -11.65 -0.09 8.71 16 12 O -0.52 -10.63 13.62 5.45 0.07 -10.56 16 13 N -0.58 -11.11 5.45 -10.46 -0.06 -11.17 16 14 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 15 C -0.03 -0.69 10.84 -17.02 -0.18 -0.88 16 16 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 17 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 18 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 19 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 20 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 21 N -0.77 -21.20 11.81 55.50 0.66 -20.55 16 22 Si 0.94 18.72 29.55 -169.99 -5.02 13.70 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 27 C -0.10 -0.75 2.88 -90.59 -0.26 -1.01 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 C -0.16 -1.09 8.33 37.16 0.31 -0.78 16 30 C -0.10 -0.66 4.74 -26.70 -0.13 -0.79 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.41 4.67 6.33 -40.82 -0.26 4.42 16 39 H 0.41 6.73 8.29 -40.82 -0.34 6.39 16 40 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 41 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 43 H 0.06 0.45 4.81 -51.93 -0.25 0.20 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.44 6.50 -51.93 -0.34 0.10 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -31.85 375.75 -7.11 -38.96 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -6.75 Total: 13.21 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.77 Total: -0.96 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.61 Total: -51.38 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.16 Total: -19.20 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.85 -7.11 -38.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746405682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.789 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds