Wall clock time and date at job start Tue Mar 31 2020 19:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46705 * 2 1 4 4 C 1.52992 * 109.47472 * 239.99987 * 2 1 3 5 5 C 1.53006 * 109.47197 * 179.97438 * 4 2 1 6 6 C 1.52991 * 109.47133 * 60.00006 * 5 4 2 7 7 H 1.08999 * 109.47515 * 60.00180 * 6 5 4 8 8 N 1.46507 * 109.47124 * 180.02562 * 6 5 4 9 9 C 1.34777 * 119.99904 * 274.99776 * 8 6 5 10 10 O 1.21366 * 119.99864 * 0.02562 * 9 8 6 11 11 C 1.49305 * 119.99881 * 179.97438 * 9 8 6 12 12 O 1.21407 * 119.99990 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99885 * 180.02562 * 11 9 8 14 14 C 1.40294 * 119.99797 * 180.02562 * 13 11 9 15 15 C 1.40716 * 126.09970 * 359.96994 * 14 13 11 16 16 N 1.30884 * 108.37733 * 180.02562 * 15 14 13 17 17 N 1.40063 * 108.43386 * 0.02562 * 16 15 14 18 18 C 1.37295 * 126.05650 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99637 * 180.02562 * 18 17 16 20 20 C 1.39003 * 119.99653 * 0.02809 * 18 17 16 21 21 N 1.31283 * 120.00365 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99631 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47519 * 90.00153 * 22 20 18 24 24 H 1.48500 * 109.47371 * 209.99952 * 22 20 18 25 25 H 1.48503 * 109.47485 * 329.99571 * 22 20 18 26 26 C 1.35790 * 126.09712 * 180.24264 * 14 13 11 27 27 C 1.53001 * 109.47435 * 299.99862 * 6 5 4 28 28 H 1.08992 * 109.47673 * 179.97438 * 27 6 5 29 29 C 1.53005 * 109.47187 * 300.00495 * 27 6 5 30 30 C 1.53003 * 109.47174 * 119.99560 * 2 1 3 31 31 H 1.09002 * 109.47139 * 299.99585 * 1 2 3 32 32 H 1.08995 * 109.47120 * 60.00736 * 1 2 3 33 33 H 1.09007 * 109.46705 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47489 * 300.00047 * 4 2 1 35 35 H 1.09004 * 109.47587 * 59.99722 * 4 2 1 36 36 H 1.08999 * 109.46774 * 299.99732 * 5 4 2 37 37 H 1.09002 * 109.46863 * 180.02562 * 5 4 2 38 38 H 0.96997 * 119.99748 * 94.99749 * 8 6 5 39 39 H 0.96997 * 120.00343 * 359.97438 * 13 11 9 40 40 H 1.07995 * 125.81565 * 359.96758 * 15 14 13 41 41 H 0.96998 * 120.00141 * 179.97438 * 21 20 18 42 42 H 1.07995 * 126.25425 * 0.02562 * 26 14 13 43 43 H 1.09004 * 109.46987 * 59.99032 * 29 27 6 44 44 H 1.08993 * 109.47033 * 179.97438 * 29 27 6 45 45 H 1.09004 * 109.46582 * 299.99547 * 29 27 6 46 46 H 1.09007 * 109.46945 * 60.00587 * 30 2 1 47 47 H 1.08998 * 109.47338 * 300.00269 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5701 -0.7206 -1.2494 6 6 4.0806 -1.4414 -0.0002 7 1 3.7177 -2.4692 0.0001 8 7 5.5456 -1.4403 -0.0002 9 6 6.2203 -2.3960 -0.6696 10 8 5.6141 -3.2571 -1.2728 11 6 7.7133 -2.3945 -0.6700 12 8 8.3197 -1.5327 -0.0669 13 7 8.3879 -3.3498 -1.3398 14 6 9.7909 -3.3488 -1.3398 15 6 10.6192 -2.4167 -0.6877 16 7 11.8662 -2.7418 -0.9166 17 7 11.8845 -3.8886 -1.7205 18 6 13.0049 -4.5376 -2.1770 19 1 12.9050 -5.4180 -2.7946 20 6 14.2678 -4.0616 -1.8443 21 7 14.3893 -2.9912 -1.0939 22 14 15.7922 -4.9452 -2.4648 23 1 16.1954 -4.3756 -3.7756 24 1 16.8974 -4.7707 -1.4884 25 1 15.4959 -6.3916 -2.6236 26 6 10.5916 -4.2440 -1.9732 27 6 3.5706 -0.7202 1.2491 28 1 3.9338 -1.2340 2.1390 29 6 4.0799 0.7226 1.2487 30 6 2.0400 -0.7212 1.2493 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.9330 0.3072 -1.2497 37 1 3.9335 -1.2340 -2.1396 38 1 6.0301 -0.7518 0.4817 39 1 7.9035 -4.0386 -1.8213 40 1 10.2833 -1.5757 -0.0994 41 1 15.2705 -2.6593 -0.8615 42 1 10.2649 -5.0843 -2.5677 43 1 3.7163 1.2361 0.3587 44 1 3.7162 1.2364 2.1385 45 1 5.1700 0.7229 1.2485 46 1 1.6767 -1.7489 1.2493 47 1 1.6767 -0.2073 2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746405682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:45 Heat of formation + Delta-G solvation = -28.155563 kcal Electronic energy + Delta-G solvation = -28400.910137 eV Core-core repulsion = 24390.954148 eV Total energy + Delta-G solvation = -4009.955989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11396 -41.41875 -40.33008 -39.13204 -36.40864 -35.66093 -34.94839 -33.16152 -32.31020 -31.99648 -29.91177 -27.86498 -27.60803 -26.80373 -25.04414 -23.42222 -22.92657 -22.12543 -21.50306 -21.23067 -20.18322 -19.36316 -19.03356 -17.74847 -17.46406 -16.98256 -16.92003 -16.73022 -15.97654 -15.70916 -15.65045 -15.45900 -15.12834 -15.06035 -14.87001 -14.72470 -14.38773 -13.86160 -13.66145 -13.52058 -13.39122 -13.14271 -12.98700 -12.91572 -12.88729 -12.51880 -12.49205 -12.32195 -12.08943 -11.98188 -11.97668 -11.82716 -11.41712 -11.07936 -11.07161 -10.96625 -10.88146 -10.55444 -10.20514 -10.14794 -8.63351 -8.49465 -6.27323 0.27631 1.29001 1.30086 1.42057 1.58507 1.72043 2.03395 2.11653 2.52492 2.57577 2.92728 3.07078 3.50641 3.63101 3.69712 3.88928 4.06076 4.20326 4.29374 4.38824 4.39054 4.44056 4.51423 4.56540 4.73629 4.77880 4.85092 4.94378 4.94966 4.96630 4.97511 5.02311 5.11588 5.15588 5.20648 5.23700 5.27397 5.29626 5.32594 5.36470 5.46980 5.50243 5.65539 5.89751 6.01426 6.24444 6.47829 6.66618 6.80388 7.06133 7.40459 7.61904 8.49775 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.042004 B = 0.001936 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.439643 B =14458.909032 C =14856.339142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.106 4.106 5 C -0.130 4.130 6 C 0.147 3.853 7 H 0.080 0.920 8 N -0.685 5.685 9 C 0.524 3.476 10 O -0.540 6.540 11 C 0.485 3.515 12 O -0.544 6.544 13 N -0.582 5.582 14 C -0.057 4.057 15 C -0.048 4.048 16 N -0.308 5.308 17 N -0.163 5.163 18 C -0.353 4.353 19 H 0.142 0.858 20 C -0.005 4.005 21 N -0.821 5.821 22 Si 1.020 2.980 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.245 1.245 26 C -0.075 4.075 27 C -0.094 4.094 28 H 0.078 0.922 29 C -0.156 4.156 30 C -0.102 4.102 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.416 0.584 39 H 0.423 0.577 40 H 0.176 0.824 41 H 0.278 0.722 42 H 0.188 0.812 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.808 4.271 2.105 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.097 0.903 4 C -0.144 4.144 5 C -0.168 4.168 6 C 0.044 3.956 7 H 0.098 0.902 8 N -0.338 5.338 9 C 0.304 3.696 10 O -0.418 6.418 11 C 0.267 3.733 12 O -0.422 6.422 13 N -0.227 5.227 14 C -0.164 4.164 15 C -0.224 4.224 16 N -0.139 5.139 17 N 0.069 4.931 18 C -0.484 4.484 19 H 0.159 0.841 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.168 1.168 26 C -0.226 4.226 27 C -0.113 4.113 28 H 0.096 0.904 29 C -0.213 4.213 30 C -0.140 4.140 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.255 0.745 39 H 0.261 0.739 40 H 0.192 0.808 41 H 0.088 0.912 42 H 0.205 0.795 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.466 4.714 2.430 24.058 hybrid contribution 0.094 -0.438 -0.339 0.562 sum -23.371 4.276 2.091 23.851 Atomic orbital electron populations 1.21804 0.94454 1.01951 1.02078 1.21209 0.95983 0.99965 0.94047 0.90345 1.21525 0.93092 1.01151 0.98656 1.21938 0.97242 1.01026 0.96642 1.21284 0.76729 1.00844 0.96743 0.90188 1.45954 1.08214 1.28943 1.50669 1.19681 0.87058 0.82608 0.80208 1.90728 1.69797 1.37739 1.43516 1.20327 0.88948 0.82742 0.81327 1.90642 1.69806 1.37720 1.44011 1.42091 1.03485 1.28544 1.48582 1.17303 0.82529 1.03306 1.13213 1.24244 0.90173 1.02415 1.05518 1.78161 1.18490 1.02138 1.15129 1.44846 1.04445 1.15839 1.27955 1.20664 0.82392 1.12066 1.33322 0.84078 1.26889 1.03246 0.96415 0.95185 1.70375 1.25933 1.20010 1.28530 0.84581 0.74472 0.79071 0.78028 1.18866 1.20093 1.16788 1.22000 0.84078 1.05206 1.11295 1.21372 0.97150 0.96838 0.95924 0.90358 1.22004 1.00595 0.95362 1.03326 1.21590 0.92447 1.01329 0.98606 0.92041 0.92510 0.92767 0.92012 0.91058 0.90706 0.93356 0.74534 0.73942 0.80762 0.91220 0.79511 0.91281 0.90909 0.93294 0.91649 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 71.98 0.66 -0.58 16 2 C -0.09 -0.94 2.45 -10.80 -0.03 -0.97 16 3 H 0.08 0.77 6.43 -2.38 -0.02 0.75 16 4 C -0.11 -1.37 5.20 30.59 0.16 -1.21 16 5 C -0.13 -2.23 5.22 30.59 0.16 -2.07 16 6 C 0.15 2.70 2.15 44.99 0.10 2.79 16 7 H 0.08 1.68 7.58 -2.39 -0.02 1.66 16 8 N -0.68 -15.84 4.99 -444.01 -2.22 -18.05 16 9 C 0.52 15.61 7.85 87.22 0.68 16.29 16 10 O -0.54 -17.34 16.14 -3.30 -0.05 -17.40 16 11 C 0.48 17.53 7.85 87.22 0.69 18.22 16 12 O -0.54 -22.23 13.62 -3.42 -0.05 -22.28 16 13 N -0.58 -21.82 5.45 -305.33 -1.66 -23.49 16 14 C -0.06 -2.66 6.90 37.82 0.26 -2.40 16 15 C -0.05 -2.58 10.84 85.44 0.93 -1.65 16 16 N -0.31 -18.32 10.39 -56.44 -0.59 -18.91 16 17 N -0.16 -9.01 3.73 -189.98 -0.71 -9.72 16 18 C -0.35 -18.58 10.25 84.02 0.86 -17.72 16 19 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 20 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 21 N -0.82 -46.80 11.81 21.66 0.26 -46.54 16 22 Si 1.02 38.18 29.55 68.60 2.03 40.20 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 26 C -0.07 -3.50 11.50 83.41 0.96 -2.54 16 27 C -0.09 -1.24 2.88 -10.77 -0.03 -1.27 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 C -0.16 -1.88 8.33 71.98 0.60 -1.28 16 30 C -0.10 -1.04 4.74 30.61 0.14 -0.90 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.07 1.20 6.43 -2.39 -0.02 1.19 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.42 9.11 6.33 -92.71 -0.59 8.52 16 39 H 0.42 13.39 8.29 -92.71 -0.77 12.62 16 40 H 0.18 9.17 5.92 -2.91 -0.02 9.15 16 41 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.19 7.00 8.06 -2.91 -0.02 6.97 16 43 H 0.07 0.79 4.81 -2.38 -0.01 0.78 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 0.68 6.50 -2.38 -0.02 0.66 16 46 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -70.94 375.75 3.28 -67.66 By element: Atomic # 1 Polarization: 43.96 SS G_CDS: -0.34 Total: 43.62 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.61 Total: 4.90 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -4.92 Total: -116.71 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.10 Total: -39.68 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.20 kcal Total: -70.94 3.28 -67.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746405682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.508 kcal (2) G-P(sol) polarization free energy of solvation -70.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds