Wall clock time and date at job start Tue Mar 31 2020 19:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47323 * 2 1 4 4 C 1.52998 * 109.47016 * 239.99731 * 2 1 3 5 5 C 1.53001 * 109.47016 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47105 * 60.00030 * 5 4 2 7 7 H 1.09001 * 109.47192 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.47002 * 60.00068 * 6 5 4 9 9 C 1.34770 * 120.00193 * 85.00226 * 8 6 5 10 10 O 1.21371 * 119.99748 * 359.97438 * 9 8 6 11 11 C 1.49309 * 120.00351 * 180.02562 * 9 8 6 12 12 O 1.21403 * 119.99580 * 359.97438 * 11 9 8 13 13 N 1.34770 * 120.00351 * 180.02562 * 11 9 8 14 14 C 1.40295 * 120.00127 * 179.97438 * 13 11 9 15 15 C 1.40715 * 126.09879 * 359.68631 * 14 13 11 16 16 N 1.30879 * 108.37640 * 179.85249 * 15 14 13 17 17 N 1.40065 * 108.43398 * 0.40608 * 16 15 14 18 18 C 1.37288 * 126.05290 * 179.73999 * 17 16 15 19 19 H 1.08001 * 119.99765 * 174.12670 * 18 17 16 20 20 C 1.39014 * 120.00445 * 354.11989 * 18 17 16 21 21 N 1.31286 * 119.99573 * 5.94111 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 185.93437 * 20 18 17 23 23 H 1.48504 * 109.46542 * 94.98753 * 22 20 18 24 24 H 1.48501 * 109.46958 * 214.98281 * 22 20 18 25 25 H 1.48498 * 109.47436 * 334.98440 * 22 20 18 26 26 C 1.35786 * 126.09868 * 179.97438 * 14 13 11 27 27 C 1.52995 * 109.47346 * 300.00201 * 6 5 4 28 28 H 1.09000 * 109.46940 * 299.99674 * 27 6 5 29 29 C 1.53006 * 109.47417 * 180.02562 * 27 6 5 30 30 C 1.52993 * 109.47611 * 59.99736 * 27 6 5 31 31 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46792 * 300.00124 * 1 2 3 33 33 H 1.08997 * 109.46818 * 59.99601 * 1 2 3 34 34 H 1.09000 * 109.47294 * 300.00287 * 4 2 1 35 35 H 1.09003 * 109.47131 * 60.00026 * 4 2 1 36 36 H 1.09000 * 109.47146 * 179.97438 * 5 4 2 37 37 H 1.09000 * 109.47323 * 300.00269 * 5 4 2 38 38 H 0.97001 * 119.99744 * 264.99919 * 8 6 5 39 39 H 0.97001 * 120.00063 * 359.97438 * 13 11 9 40 40 H 1.07997 * 125.81580 * 359.97438 * 15 14 13 41 41 H 0.97001 * 119.99659 * 179.97438 * 21 20 18 42 42 H 1.08002 * 126.25444 * 359.94836 * 26 14 13 43 43 H 1.09000 * 109.46700 * 299.99700 * 29 27 6 44 44 H 1.09001 * 109.47256 * 59.99530 * 29 27 6 45 45 H 1.09000 * 109.47032 * 179.97438 * 29 27 6 46 46 H 1.08996 * 109.47809 * 180.02562 * 30 27 6 47 47 H 1.09000 * 109.47019 * 59.99986 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4434 0.0004 7 1 5.1694 -1.4442 0.0004 8 7 3.5906 -2.8245 0.0001 9 6 4.2671 -3.7787 -0.6693 10 8 5.2812 -3.4938 -1.2723 11 6 3.7686 -5.1861 -0.6701 12 8 2.7541 -5.4710 -0.0673 13 7 4.4455 -6.1404 -1.3390 14 6 3.9773 -7.4630 -1.3393 15 6 2.8257 -7.9349 -0.6828 16 7 2.7145 -9.2180 -0.9157 17 7 3.7905 -9.6172 -1.7186 18 6 4.0304 -10.8900 -2.1738 19 1 4.8388 -11.0724 -2.8664 20 6 3.2330 -11.9441 -1.7432 21 7 2.1805 -11.7078 -0.9949 22 14 3.6589 -13.6967 -2.2295 23 1 4.4610 -14.3284 -1.1511 24 1 2.4085 -14.4712 -2.4347 25 1 4.4455 -13.6838 -3.4889 26 6 4.5578 -8.5170 -1.9685 27 6 3.5694 -0.7222 1.2496 28 1 3.9332 0.3053 1.2498 29 6 4.0794 -1.4434 2.4989 30 6 2.0395 -0.7216 1.2493 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.9333 -1.2361 -2.1386 37 1 3.9337 0.3057 -1.2486 38 1 2.7799 -3.0521 0.4817 39 1 5.2564 -5.9129 -1.8203 40 1 2.1476 -7.3394 -0.0895 41 1 1.6238 -12.4433 -0.6947 42 1 5.4615 -8.4894 -2.5593 43 1 3.7161 -2.4711 2.4989 44 1 5.1694 -1.4435 2.4989 45 1 3.7164 -0.9293 3.3888 46 1 1.6761 -0.2074 2.1390 47 1 1.6758 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746405685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:50 Heat of formation + Delta-G solvation = -9.016988 kcal Electronic energy + Delta-G solvation = -28850.550902 eV Core-core repulsion = 24841.424824 eV Total energy + Delta-G solvation = -4009.126078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.85534 -39.87463 -38.93594 -37.68819 -34.91444 -34.19269 -33.21532 -32.80925 -31.29189 -30.32038 -28.08014 -26.93566 -26.57587 -25.26727 -23.90975 -22.30327 -21.11420 -20.95264 -20.50957 -19.46892 -19.28138 -18.24029 -17.45214 -16.31034 -15.82220 -15.74019 -15.47748 -15.17612 -14.98155 -14.78856 -14.26767 -14.15704 -13.97111 -13.73630 -13.60810 -13.34068 -13.00649 -12.97727 -12.71474 -12.58580 -12.16867 -12.08845 -11.74794 -11.63803 -11.55515 -11.50100 -11.31423 -11.18779 -11.16005 -10.84210 -10.73978 -10.55042 -10.48149 -10.27943 -10.26701 -9.23500 -9.19823 -9.09166 -8.87205 -8.12763 -6.77712 -6.61235 -4.27957 1.68660 2.64364 2.93183 3.03805 3.08884 3.34324 3.72254 3.76333 4.00113 4.28772 4.36725 4.38145 4.42678 4.61846 4.71281 4.85635 4.96974 5.00676 5.02577 5.08495 5.16187 5.26321 5.32805 5.37591 5.46952 5.55727 5.57770 5.67333 5.75106 5.79487 5.86038 5.94725 5.99146 6.03410 6.08552 6.20090 6.21403 6.33551 6.36522 6.76512 6.89272 6.93012 7.16267 7.27056 7.77668 7.88505 8.12253 8.18684 8.49538 8.69782 9.31426 9.59796 10.34867 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.002236 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.112789 B =12521.196292 C =12851.545871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.116 4.116 5 C -0.131 4.131 6 C 0.149 3.851 7 H 0.091 0.909 8 N -0.694 5.694 9 C 0.515 3.485 10 O -0.530 6.530 11 C 0.483 3.517 12 O -0.524 6.524 13 N -0.584 5.584 14 C -0.069 4.069 15 C -0.027 4.027 16 N -0.261 5.261 17 N -0.139 5.139 18 C -0.322 4.322 19 H 0.118 0.882 20 C 0.047 3.953 21 N -0.767 5.767 22 Si 0.936 3.064 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.263 1.263 26 C -0.077 4.077 27 C -0.098 4.098 28 H 0.085 0.915 29 C -0.151 4.151 30 C -0.114 4.114 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.411 0.589 39 H 0.409 0.591 40 H 0.177 0.823 41 H 0.276 0.724 42 H 0.149 0.851 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 21.574 2.821 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.154 4.154 5 C -0.170 4.170 6 C 0.045 3.955 7 H 0.109 0.891 8 N -0.349 5.349 9 C 0.296 3.704 10 O -0.406 6.406 11 C 0.263 3.737 12 O -0.402 6.402 13 N -0.226 5.226 14 C -0.175 4.175 15 C -0.202 4.202 16 N -0.092 5.092 17 N 0.094 4.906 18 C -0.455 4.455 19 H 0.136 0.864 20 C -0.171 4.171 21 N -0.393 5.393 22 Si 0.759 3.241 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.187 1.187 26 C -0.228 4.228 27 C -0.116 4.116 28 H 0.103 0.897 29 C -0.208 4.208 30 C -0.151 4.151 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.249 0.751 39 H 0.244 0.756 40 H 0.194 0.806 41 H 0.086 0.914 42 H 0.166 0.834 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.549 20.400 3.139 20.647 hybrid contribution 0.776 0.026 -0.447 0.896 sum 1.325 20.426 2.692 20.646 Atomic orbital electron populations 1.21838 0.95154 1.02140 1.01492 1.21148 0.95554 0.99459 0.94836 0.91237 1.21598 0.95146 1.01205 0.97451 1.21933 0.96166 1.00628 0.98242 1.21064 0.99599 0.80069 0.94766 0.89117 1.45836 1.29220 1.07765 1.52076 1.20278 0.83894 0.86662 0.79524 1.90723 1.24377 1.82848 1.42655 1.19709 0.85506 0.85756 0.82689 1.90650 1.24401 1.81557 1.43545 1.42153 1.26538 1.06074 1.47875 1.17255 1.02648 0.82856 1.14698 1.24138 0.98453 0.93197 1.04456 1.78255 1.06718 1.10315 1.13905 1.44558 1.13006 1.05343 1.27646 1.19927 1.17513 0.79883 1.28152 0.86438 1.25671 0.94763 1.01055 0.95609 1.70217 1.10440 1.33066 1.25619 0.85791 0.78649 0.80200 0.79415 1.19584 1.20061 1.18714 1.21314 1.02070 0.87365 1.12094 1.21420 0.96116 0.99996 0.94110 0.89650 1.21856 1.01252 1.00967 0.96745 1.21705 0.94364 1.01131 0.97935 0.92417 0.92783 0.92760 0.91545 0.91927 0.91113 0.90948 0.75096 0.75620 0.80580 0.91375 0.83355 0.92134 0.92446 0.92368 0.91431 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 2 C -0.09 -0.65 2.72 -90.62 -0.25 -0.90 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.99 5.05 -26.73 -0.13 -1.12 16 5 C -0.13 -1.17 5.60 -26.73 -0.15 -1.32 16 6 C 0.15 1.41 2.23 -67.93 -0.15 1.26 16 7 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 8 N -0.69 -8.13 3.53 -54.28 -0.19 -8.32 16 9 C 0.52 7.73 7.85 -11.65 -0.09 7.64 16 10 O -0.53 -8.63 16.14 5.48 0.09 -8.55 16 11 C 0.48 8.73 7.85 -11.65 -0.09 8.64 16 12 O -0.52 -10.55 13.62 5.45 0.07 -10.48 16 13 N -0.58 -11.06 5.45 -10.46 -0.06 -11.12 16 14 C -0.07 -1.59 6.90 -83.93 -0.58 -2.17 16 15 C -0.03 -0.69 10.84 -17.02 -0.18 -0.88 16 16 N -0.26 -7.50 10.41 30.81 0.32 -7.18 16 17 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 18 C -0.32 -8.45 10.24 -14.82 -0.15 -8.60 16 19 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 20 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 21 N -0.77 -21.16 11.84 55.50 0.66 -20.50 16 22 Si 0.94 18.72 29.56 -169.99 -5.02 13.70 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 26 C -0.08 -1.82 11.50 -16.38 -0.19 -2.00 16 27 C -0.10 -0.71 2.51 -90.62 -0.23 -0.94 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 C -0.15 -1.17 9.04 37.16 0.34 -0.84 16 30 C -0.11 -0.82 4.31 -26.73 -0.12 -0.93 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.67 7.60 -51.93 -0.39 0.28 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.41 4.69 6.12 -40.82 -0.25 4.44 16 39 H 0.41 6.71 8.29 -40.82 -0.34 6.37 16 40 H 0.18 4.44 5.92 -52.49 -0.31 4.12 16 41 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.15 2.94 8.06 -52.49 -0.42 2.51 16 43 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.53 6.51 -51.93 -0.34 0.20 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -31.61 380.15 -7.21 -38.82 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -7.03 Total: 13.50 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.73 Total: -1.77 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.69 Total: -50.95 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.16 Total: -19.02 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.61 -7.21 -38.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746405685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.800 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds