Wall clock time and date at job start Tue Mar 31 2020 19:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47323 * 2 1 4 4 C 1.52998 * 109.47016 * 239.99731 * 2 1 3 5 5 C 1.53001 * 109.47016 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47105 * 60.00030 * 5 4 2 7 7 H 1.09001 * 109.47192 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.47002 * 60.00068 * 6 5 4 9 9 C 1.34770 * 120.00193 * 85.00226 * 8 6 5 10 10 O 1.21371 * 119.99748 * 359.97438 * 9 8 6 11 11 C 1.49309 * 120.00351 * 180.02562 * 9 8 6 12 12 O 1.21403 * 119.99580 * 359.97438 * 11 9 8 13 13 N 1.34770 * 120.00351 * 180.02562 * 11 9 8 14 14 C 1.40295 * 120.00127 * 179.97438 * 13 11 9 15 15 C 1.40715 * 126.09879 * 359.68631 * 14 13 11 16 16 N 1.30879 * 108.37640 * 179.85249 * 15 14 13 17 17 N 1.40065 * 108.43398 * 0.40608 * 16 15 14 18 18 C 1.37288 * 126.05290 * 179.73999 * 17 16 15 19 19 H 1.08001 * 119.99765 * 174.12670 * 18 17 16 20 20 C 1.39014 * 120.00445 * 354.11989 * 18 17 16 21 21 N 1.31286 * 119.99573 * 5.94111 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 185.93437 * 20 18 17 23 23 H 1.48504 * 109.46542 * 94.98753 * 22 20 18 24 24 H 1.48501 * 109.46958 * 214.98281 * 22 20 18 25 25 H 1.48498 * 109.47436 * 334.98440 * 22 20 18 26 26 C 1.35786 * 126.09868 * 179.97438 * 14 13 11 27 27 C 1.52995 * 109.47346 * 300.00201 * 6 5 4 28 28 H 1.09000 * 109.46940 * 299.99674 * 27 6 5 29 29 C 1.53006 * 109.47417 * 180.02562 * 27 6 5 30 30 C 1.52993 * 109.47611 * 59.99736 * 27 6 5 31 31 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46792 * 300.00124 * 1 2 3 33 33 H 1.08997 * 109.46818 * 59.99601 * 1 2 3 34 34 H 1.09000 * 109.47294 * 300.00287 * 4 2 1 35 35 H 1.09003 * 109.47131 * 60.00026 * 4 2 1 36 36 H 1.09000 * 109.47146 * 179.97438 * 5 4 2 37 37 H 1.09000 * 109.47323 * 300.00269 * 5 4 2 38 38 H 0.97001 * 119.99744 * 264.99919 * 8 6 5 39 39 H 0.97001 * 120.00063 * 359.97438 * 13 11 9 40 40 H 1.07997 * 125.81580 * 359.97438 * 15 14 13 41 41 H 0.97001 * 119.99659 * 179.97438 * 21 20 18 42 42 H 1.08002 * 126.25444 * 359.94836 * 26 14 13 43 43 H 1.09000 * 109.46700 * 299.99700 * 29 27 6 44 44 H 1.09001 * 109.47256 * 59.99530 * 29 27 6 45 45 H 1.09000 * 109.47032 * 179.97438 * 29 27 6 46 46 H 1.08996 * 109.47809 * 180.02562 * 30 27 6 47 47 H 1.09000 * 109.47019 * 59.99986 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4434 0.0004 7 1 5.1694 -1.4442 0.0004 8 7 3.5906 -2.8245 0.0001 9 6 4.2671 -3.7787 -0.6693 10 8 5.2812 -3.4938 -1.2723 11 6 3.7686 -5.1861 -0.6701 12 8 2.7541 -5.4710 -0.0673 13 7 4.4455 -6.1404 -1.3390 14 6 3.9773 -7.4630 -1.3393 15 6 2.8257 -7.9349 -0.6828 16 7 2.7145 -9.2180 -0.9157 17 7 3.7905 -9.6172 -1.7186 18 6 4.0304 -10.8900 -2.1738 19 1 4.8388 -11.0724 -2.8664 20 6 3.2330 -11.9441 -1.7432 21 7 2.1805 -11.7078 -0.9949 22 14 3.6589 -13.6967 -2.2295 23 1 4.4610 -14.3284 -1.1511 24 1 2.4085 -14.4712 -2.4347 25 1 4.4455 -13.6838 -3.4889 26 6 4.5578 -8.5170 -1.9685 27 6 3.5694 -0.7222 1.2496 28 1 3.9332 0.3053 1.2498 29 6 4.0794 -1.4434 2.4989 30 6 2.0395 -0.7216 1.2493 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.9333 -1.2361 -2.1386 37 1 3.9337 0.3057 -1.2486 38 1 2.7799 -3.0521 0.4817 39 1 5.2564 -5.9129 -1.8203 40 1 2.1476 -7.3394 -0.0895 41 1 1.6238 -12.4433 -0.6947 42 1 5.4615 -8.4894 -2.5593 43 1 3.7161 -2.4711 2.4989 44 1 5.1694 -1.4435 2.4989 45 1 3.7164 -0.9293 3.3888 46 1 1.6761 -0.2074 2.1390 47 1 1.6758 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746405685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:49 Heat of formation + Delta-G solvation = -29.081991 kcal Electronic energy + Delta-G solvation = -28851.420986 eV Core-core repulsion = 24841.424824 eV Total energy + Delta-G solvation = -4009.996162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13503 -41.44722 -40.23323 -39.00866 -36.27526 -35.45767 -34.92797 -33.61275 -32.31640 -32.08647 -29.90309 -27.63031 -27.52128 -26.86187 -25.31581 -23.12729 -22.86569 -21.95244 -21.57260 -21.24404 -20.11884 -19.67677 -19.18223 -17.56252 -17.46341 -17.01529 -16.87418 -16.53502 -16.06336 -15.83787 -15.54972 -15.32949 -15.18244 -14.87844 -14.81971 -14.68275 -14.49559 -14.11883 -13.53034 -13.39240 -13.35237 -13.23255 -13.01617 -12.89402 -12.82710 -12.70451 -12.48242 -12.26065 -12.14891 -12.07070 -11.97495 -11.78935 -11.36826 -11.14936 -11.08457 -10.93576 -10.87656 -10.56200 -10.17688 -10.14601 -8.63214 -8.50220 -6.27474 0.29783 1.28775 1.32760 1.42419 1.58824 1.72084 2.04448 2.11646 2.53141 2.59458 2.94568 3.05940 3.52303 3.63323 3.74024 3.77139 4.07692 4.17613 4.38594 4.39953 4.40175 4.51484 4.52167 4.60456 4.64190 4.77166 4.85284 4.92468 4.95414 4.97525 4.98105 5.04173 5.09422 5.15231 5.20649 5.20913 5.24816 5.29830 5.34503 5.40495 5.44640 5.46980 5.61492 5.90094 6.03121 6.24780 6.48544 6.66671 6.82370 7.07265 7.40630 7.61742 8.49326 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.002236 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.112789 B =12521.196292 C =12851.545871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.086 0.914 4 C -0.115 4.115 5 C -0.127 4.127 6 C 0.145 3.855 7 H 0.085 0.915 8 N -0.677 5.677 9 C 0.524 3.476 10 O -0.541 6.541 11 C 0.484 3.516 12 O -0.544 6.544 13 N -0.583 5.583 14 C -0.056 4.056 15 C -0.049 4.049 16 N -0.308 5.308 17 N -0.163 5.163 18 C -0.354 4.354 19 H 0.141 0.859 20 C -0.005 4.005 21 N -0.820 5.820 22 Si 1.020 2.980 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.243 1.243 26 C -0.075 4.075 27 C -0.088 4.088 28 H 0.109 0.891 29 C -0.151 4.151 30 C -0.113 4.113 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.414 0.586 39 H 0.423 0.577 40 H 0.175 0.825 41 H 0.278 0.722 42 H 0.188 0.812 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.797 23.339 2.487 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.105 0.895 4 C -0.153 4.153 5 C -0.165 4.165 6 C 0.042 3.958 7 H 0.103 0.897 8 N -0.331 5.331 9 C 0.304 3.696 10 O -0.419 6.419 11 C 0.266 3.734 12 O -0.423 6.423 13 N -0.228 5.228 14 C -0.162 4.162 15 C -0.224 4.224 16 N -0.140 5.140 17 N 0.069 4.931 18 C -0.485 4.485 19 H 0.159 0.841 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.191 1.191 24 H -0.200 1.200 25 H -0.166 1.166 26 C -0.226 4.226 27 C -0.107 4.107 28 H 0.128 0.872 29 C -0.208 4.208 30 C -0.151 4.151 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.252 0.748 39 H 0.260 0.740 40 H 0.192 0.808 41 H 0.088 0.912 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.923 22.232 2.806 22.491 hybrid contribution 0.340 -0.306 -0.304 0.549 sum 2.263 21.926 2.501 22.184 Atomic orbital electron populations 1.21836 0.95190 1.01446 1.02161 1.21122 0.95483 1.00023 0.93811 0.89521 1.21585 0.94873 1.00199 0.98651 1.21908 0.96321 1.01564 0.96748 1.21335 0.99369 0.78607 0.96512 0.89675 1.45892 1.28549 1.08296 1.50339 1.19632 0.84050 0.85589 0.80325 1.90726 1.24909 1.82601 1.43626 1.20385 0.84792 0.86988 0.81277 1.90640 1.25330 1.82270 1.44023 1.42096 1.27305 1.04685 1.48675 1.17297 1.01326 0.84604 1.13005 1.24235 0.99790 0.92950 1.05425 1.78151 1.08573 1.11640 1.15617 1.44841 1.13368 1.06534 1.28357 1.20658 1.18619 0.80042 1.29148 0.84121 1.26895 0.94044 1.05848 0.94908 1.70382 1.12113 1.34680 1.27612 0.84567 0.78402 0.73475 0.79710 1.19145 1.20030 1.16619 1.22006 1.02658 0.86430 1.11495 1.21407 0.96120 1.00712 0.92457 0.87244 1.21859 1.01174 1.00146 0.97663 1.21711 0.94178 1.00509 0.98670 0.93811 0.91781 0.92459 0.93790 0.91431 0.93238 0.88498 0.74817 0.73962 0.80816 0.91221 0.79508 0.93958 0.92577 0.90905 0.89970 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 2 C -0.09 -1.02 2.72 -10.79 -0.03 -1.05 16 3 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.12 -1.80 5.05 30.59 0.15 -1.64 16 5 C -0.13 -2.03 5.60 30.59 0.17 -1.86 16 6 C 0.14 2.50 2.23 44.99 0.10 2.60 16 7 H 0.09 1.63 7.58 -2.39 -0.02 1.62 16 8 N -0.68 -15.48 3.53 -444.01 -1.57 -17.05 16 9 C 0.52 15.48 7.85 87.23 0.68 16.17 16 10 O -0.54 -17.12 16.14 -3.31 -0.05 -17.18 16 11 C 0.48 17.55 7.85 87.23 0.69 18.23 16 12 O -0.54 -22.40 13.62 -3.41 -0.05 -22.44 16 13 N -0.58 -21.90 5.45 -305.34 -1.66 -23.57 16 14 C -0.06 -2.61 6.90 37.82 0.26 -2.35 16 15 C -0.05 -2.61 10.84 85.44 0.93 -1.69 16 16 N -0.31 -18.40 10.41 -56.44 -0.59 -18.99 16 17 N -0.16 -9.03 3.73 -189.98 -0.71 -9.74 16 18 C -0.35 -18.62 10.24 84.02 0.86 -17.76 16 19 H 0.14 6.44 7.84 -2.91 -0.02 6.42 16 20 C 0.00 -0.24 5.50 84.96 0.47 0.22 16 21 N -0.82 -46.81 11.84 21.67 0.26 -46.55 16 22 Si 1.02 38.25 29.56 68.60 2.03 40.28 16 23 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.28 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 26 C -0.08 -3.52 11.50 83.41 0.96 -2.56 16 27 C -0.09 -1.07 2.51 -10.80 -0.03 -1.09 16 28 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 29 C -0.15 -2.06 9.04 71.98 0.65 -1.41 16 30 C -0.11 -1.37 4.31 30.59 0.13 -1.24 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.04 0.88 7.60 -2.39 -0.02 0.86 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.41 9.37 6.12 -92.71 -0.57 8.80 16 39 H 0.42 13.43 8.29 -92.71 -0.77 12.66 16 40 H 0.18 9.19 5.92 -2.91 -0.02 9.17 16 41 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.19 7.02 8.06 -2.91 -0.02 7.00 16 43 H 0.04 0.73 7.45 -2.39 -0.02 0.71 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.05 0.77 6.51 -2.39 -0.02 0.76 16 Total: -1.00 -71.15 380.15 3.98 -67.17 By element: Atomic # 1 Polarization: 45.03 SS G_CDS: -0.33 Total: 44.70 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.66 Total: 3.37 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.27 Total: -115.89 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.10 Total: -39.62 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -71.15 3.98 -67.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746405685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.087 kcal (2) G-P(sol) polarization free energy of solvation -71.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds