Wall clock time and date at job start Tue Mar 31 2020 19:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.36822 * 2 1 4 4 C 1.50878 * 109.36660 * 240.25666 * 2 1 3 5 5 C 1.52568 * 109.36076 * 148.04728 * 4 2 1 6 6 C 1.47095 * 114.32332 * 85.00829 * 5 4 2 7 7 C 1.54856 * 110.32845 * 297.20488 * 6 5 4 8 8 H 1.09002 * 109.44822 * 311.22432 * 7 6 5 9 9 C 1.53001 * 109.43282 * 191.29126 * 7 6 5 10 10 N 1.44582 * 109.60119 * 71.26345 * 7 6 5 11 11 C 1.34773 * 118.64056 * 89.25370 * 10 7 6 12 12 O 1.21365 * 120.00300 * 356.95421 * 11 10 7 13 13 C 1.49313 * 119.99852 * 176.68014 * 11 10 7 14 14 O 1.21407 * 119.99781 * 353.30852 * 13 11 10 15 15 N 1.34769 * 120.00020 * 173.30780 * 13 11 10 16 16 C 1.40290 * 120.00063 * 180.02562 * 15 13 11 17 17 C 1.40722 * 126.09944 * 359.68609 * 16 15 13 18 18 N 1.30879 * 108.37705 * 179.85446 * 17 16 15 19 19 N 1.40057 * 108.43492 * 0.40687 * 18 17 16 20 20 C 1.37295 * 126.05468 * 179.75724 * 19 18 17 21 21 H 1.08009 * 120.00189 * 179.97438 * 20 19 18 22 22 C 1.39003 * 120.00296 * 359.97438 * 20 19 18 23 23 N 1.31286 * 120.00062 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00281 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47090 * 60.00393 * 24 22 20 26 26 H 1.48501 * 109.47124 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47153 * 299.99855 * 24 22 20 28 28 C 1.35787 * 126.10290 * 179.97438 * 16 15 13 29 29 C 1.47603 * 122.71209 * 269.53511 * 10 7 6 30 30 H 1.09000 * 109.46758 * 179.74389 * 1 2 3 31 31 H 1.08994 * 109.46923 * 299.74126 * 1 2 3 32 32 H 1.09000 * 109.46867 * 59.74464 * 1 2 3 33 33 H 1.09001 * 109.49218 * 28.08437 * 4 2 1 34 34 H 1.09002 * 109.49192 * 268.01689 * 4 2 1 35 35 H 1.09003 * 108.51255 * 323.76117 * 5 4 2 36 36 H 1.08997 * 108.39661 * 206.17553 * 5 4 2 37 37 H 1.09000 * 109.32901 * 176.93860 * 6 5 4 38 38 H 1.09008 * 109.32484 * 57.46918 * 6 5 4 39 39 H 1.08999 * 109.47181 * 317.40932 * 9 7 6 40 40 H 1.09001 * 109.46868 * 77.40377 * 9 7 6 41 41 H 1.08996 * 109.47158 * 197.40449 * 9 7 6 42 42 H 0.96996 * 120.00604 * 0.02562 * 15 13 11 43 43 H 1.08004 * 125.81182 * 0.03226 * 17 16 15 44 44 H 0.96996 * 120.00323 * 180.02562 * 23 22 20 45 45 H 1.08002 * 126.25144 * 359.94753 * 28 16 15 46 46 H 1.09003 * 108.94543 * 162.56127 * 29 10 7 47 47 H 1.08999 * 108.94851 * 281.18539 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8915 1.0283 0.0000 4 6 2.0304 -0.7062 -1.2359 5 6 3.3503 -0.0806 -1.6765 6 6 4.5356 -0.6249 -0.9964 7 6 4.4634 -0.3372 0.5234 8 1 4.2230 0.7140 0.6828 9 6 5.8153 -0.6536 1.1662 10 7 3.4395 -1.1618 1.1251 11 6 3.7788 -2.3847 1.5788 12 8 4.9109 -2.7952 1.4283 13 6 2.7633 -3.2319 2.2719 14 8 1.6696 -2.7755 2.5352 15 7 3.0610 -4.5034 2.6053 16 6 2.1067 -5.2996 3.2561 17 6 0.8085 -4.9023 3.6260 18 7 0.2167 -5.9150 4.2067 19 7 1.1118 -6.9917 4.2394 20 6 0.8644 -8.2323 4.7729 21 1 1.6291 -8.9946 4.7448 22 6 -0.3702 -8.5074 5.3493 23 7 -1.2999 -7.5811 5.3831 24 14 -0.7071 -10.1956 6.0745 25 1 0.2657 -10.4701 7.1624 26 1 -2.0868 -10.2325 6.6226 27 1 -0.5684 -11.2263 5.0145 28 6 2.2730 -6.5896 3.6464 29 6 2.0368 -0.7219 1.2575 30 1 -0.3633 -1.0277 -0.0046 31 1 -0.3633 0.5098 0.8923 32 1 -0.3633 0.5178 -0.8877 33 1 1.2957 -0.6055 -2.0348 34 1 2.1845 -1.7622 -1.0141 35 1 3.3051 0.9920 -1.4875 36 1 3.4642 -0.2374 -2.7491 37 1 5.4323 -0.1626 -1.4090 38 1 4.5813 -1.7020 -1.1580 39 1 6.2023 -1.5871 0.7576 40 1 6.5162 0.1539 0.9544 41 1 5.6906 -0.7530 2.2444 42 1 3.9349 -4.8680 2.3953 43 1 0.3733 -3.9283 3.4567 44 1 -2.1613 -7.7729 5.7856 45 1 3.1619 -7.1880 3.5117 46 1 1.4086 -1.5933 1.4426 47 1 1.9572 -0.0436 2.1070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746419088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:34 Heat of formation + Delta-G solvation = 34.197566 kcal Electronic energy + Delta-G solvation = -29716.312647 eV Core-core repulsion = 25709.060493 eV Total energy + Delta-G solvation = -4007.252154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.17360 -39.79549 -38.51476 -37.76455 -34.83588 -34.55026 -33.64851 -33.11618 -30.42327 -30.24868 -28.06189 -26.56552 -26.31067 -25.33320 -24.24549 -22.80253 -21.34557 -20.89233 -20.24440 -19.53437 -19.18886 -17.71072 -17.09548 -16.30485 -16.06108 -15.80489 -15.49428 -15.19066 -14.90764 -14.77891 -14.29440 -14.09941 -14.03217 -13.82010 -13.32784 -13.01013 -12.91679 -12.87657 -12.52873 -12.44720 -12.26769 -12.02835 -11.77681 -11.71345 -11.61534 -11.41321 -11.28277 -11.03156 -10.92362 -10.75769 -10.70666 -10.58759 -10.39096 -10.32993 -9.99489 -9.24176 -8.91223 -8.71753 -8.51290 -8.14751 -6.79738 -6.61881 -4.29393 1.66567 2.59385 2.93362 3.02687 3.06385 3.30401 3.65840 3.69805 3.85037 4.34723 4.44238 4.51663 4.59934 4.71154 4.83166 4.93618 4.96676 4.97877 5.10964 5.18989 5.37686 5.46201 5.52081 5.64044 5.66320 5.68859 5.77156 5.86631 5.89047 5.99725 6.02340 6.12614 6.14207 6.18651 6.21032 6.26243 6.33089 6.34437 6.65736 6.75120 6.86688 7.03332 7.15658 7.20020 7.74186 7.85581 8.13364 8.16844 8.47990 8.67929 9.29273 9.58008 10.33789 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.002677 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.313744 B =10456.812427 C =11292.478501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.128 4.128 7 C 0.143 3.857 8 H 0.081 0.919 9 C -0.156 4.156 10 N -0.571 5.571 11 C 0.510 3.490 12 O -0.525 6.525 13 C 0.481 3.519 14 O -0.514 6.514 15 N -0.580 5.580 16 C -0.071 4.071 17 C -0.026 4.026 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.047 3.953 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.077 4.077 29 C 0.067 3.933 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.409 0.591 43 H 0.178 0.822 44 H 0.276 0.724 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.070 13.309 -10.853 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.167 4.167 7 C 0.039 3.961 8 H 0.099 0.901 9 C -0.213 4.213 10 N -0.304 5.304 11 C 0.293 3.707 12 O -0.402 6.402 13 C 0.264 3.736 14 O -0.394 6.394 15 N -0.222 5.222 16 C -0.177 4.177 17 C -0.201 4.201 18 N -0.091 5.091 19 N 0.096 4.904 20 C -0.455 4.455 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.229 4.229 29 C -0.054 4.054 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.244 0.756 43 H 0.195 0.805 44 H 0.087 0.913 45 H 0.166 0.834 46 H 0.168 0.832 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.589 13.063 -10.104 17.781 hybrid contribution 1.137 -0.418 -0.225 1.232 sum 7.726 12.645 -10.329 18.063 Atomic orbital electron populations 1.21815 0.94049 1.02630 1.01662 1.21292 0.96440 0.99325 0.95092 0.91548 1.21180 0.96365 1.00490 0.97057 1.20468 0.94827 1.00251 1.00005 1.21249 0.98276 1.02332 0.94836 1.21186 0.88181 0.94317 0.92374 0.90087 1.22310 0.94989 1.02898 1.01123 1.47691 1.10374 1.14766 1.57573 1.20237 0.88073 0.82539 0.79854 1.90695 1.20597 1.71791 1.57097 1.19825 0.87998 0.82969 0.82855 1.90348 1.23641 1.71175 1.54234 1.42176 1.16238 1.10277 1.53462 1.17259 0.92730 0.92135 1.15543 1.24144 0.92291 1.00040 1.03664 1.78264 1.14140 0.92900 1.23821 1.44553 1.06211 1.08866 1.30799 1.19880 1.01347 0.86447 1.37779 0.86490 1.25658 0.95140 0.99920 0.96366 1.70193 1.03924 1.32307 1.32934 0.85874 0.78365 0.80310 0.79512 1.19088 1.20083 1.19093 1.21308 0.94142 0.95512 1.11927 1.23379 0.81004 1.04646 0.96364 0.91937 0.92381 0.92609 0.91770 0.91699 0.92382 0.92466 0.90958 0.91396 0.89021 0.93234 0.92629 0.75601 0.80527 0.91290 0.83395 0.83233 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.87 37.16 0.33 -1.03 16 2 C -0.10 -1.01 2.54 -91.37 -0.23 -1.24 16 3 H 0.07 0.59 7.32 -51.93 -0.38 0.21 16 4 C -0.11 -1.12 5.02 -28.02 -0.14 -1.26 16 5 C -0.12 -1.02 5.15 -29.79 -0.15 -1.18 16 6 C -0.13 -1.23 4.99 -28.59 -0.14 -1.37 16 7 C 0.14 1.52 2.57 -67.98 -0.17 1.35 16 8 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 9 C -0.16 -1.74 7.81 37.16 0.29 -1.45 16 10 N -0.57 -7.31 2.21 -165.68 -0.37 -7.67 16 11 C 0.51 7.78 7.20 -11.65 -0.08 7.70 16 12 O -0.52 -8.33 12.86 5.48 0.07 -8.26 16 13 C 0.48 8.52 7.69 -11.65 -0.09 8.43 16 14 O -0.51 -9.81 10.10 5.45 0.05 -9.76 16 15 N -0.58 -10.73 5.44 -10.46 -0.06 -10.79 16 16 C -0.07 -1.60 6.90 -83.93 -0.58 -2.18 16 17 C -0.03 -0.65 10.84 -17.02 -0.18 -0.83 16 18 N -0.26 -7.35 10.39 30.81 0.32 -7.03 16 19 N -0.14 -3.70 3.73 -11.40 -0.04 -3.74 16 20 C -0.32 -8.35 10.25 -14.82 -0.15 -8.50 16 21 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 23 N -0.77 -20.94 11.81 55.50 0.66 -20.28 16 24 Si 0.94 18.53 29.55 -169.99 -5.02 13.51 16 25 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 27 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 28 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 29 C 0.07 0.82 4.86 -3.13 -0.02 0.80 16 30 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.06 0.58 7.74 -51.93 -0.40 0.18 16 34 H 0.06 0.78 7.48 -51.93 -0.39 0.39 16 35 H 0.06 0.45 7.36 -51.93 -0.38 0.07 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 38 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 39 H 0.09 1.17 6.07 -51.93 -0.32 0.85 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.70 7.62 -51.93 -0.40 0.31 16 42 H 0.41 6.58 8.31 -40.82 -0.34 6.24 16 43 H 0.18 4.28 5.92 -52.48 -0.31 3.97 16 44 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.15 2.89 8.06 -52.49 -0.42 2.46 16 46 H 0.15 2.23 4.10 -55.84 -0.23 2.00 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -30.07 368.31 -7.36 -37.43 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -6.91 Total: 12.69 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.61 Total: -1.66 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.51 Total: -49.52 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.13 Total: -18.01 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.07 -7.36 -37.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746419088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.628 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds