Wall clock time and date at job start Tue Mar 31 2020 19:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.36822 * 2 1 4 4 C 1.50878 * 109.36660 * 240.25666 * 2 1 3 5 5 C 1.52568 * 109.36076 * 148.04728 * 4 2 1 6 6 C 1.47095 * 114.32332 * 85.00829 * 5 4 2 7 7 C 1.54856 * 110.32845 * 297.20488 * 6 5 4 8 8 H 1.09002 * 109.44822 * 311.22432 * 7 6 5 9 9 C 1.53001 * 109.43282 * 191.29126 * 7 6 5 10 10 N 1.44582 * 109.60119 * 71.26345 * 7 6 5 11 11 C 1.34773 * 118.64056 * 89.25370 * 10 7 6 12 12 O 1.21365 * 120.00300 * 356.95421 * 11 10 7 13 13 C 1.49313 * 119.99852 * 176.68014 * 11 10 7 14 14 O 1.21407 * 119.99781 * 353.30852 * 13 11 10 15 15 N 1.34769 * 120.00020 * 173.30780 * 13 11 10 16 16 C 1.40290 * 120.00063 * 180.02562 * 15 13 11 17 17 C 1.40722 * 126.09944 * 359.68609 * 16 15 13 18 18 N 1.30879 * 108.37705 * 179.85446 * 17 16 15 19 19 N 1.40057 * 108.43492 * 0.40687 * 18 17 16 20 20 C 1.37295 * 126.05468 * 179.75724 * 19 18 17 21 21 H 1.08009 * 120.00189 * 179.97438 * 20 19 18 22 22 C 1.39003 * 120.00296 * 359.97438 * 20 19 18 23 23 N 1.31286 * 120.00062 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00281 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47090 * 60.00393 * 24 22 20 26 26 H 1.48501 * 109.47124 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47153 * 299.99855 * 24 22 20 28 28 C 1.35787 * 126.10290 * 179.97438 * 16 15 13 29 29 C 1.47603 * 122.71209 * 269.53511 * 10 7 6 30 30 H 1.09000 * 109.46758 * 179.74389 * 1 2 3 31 31 H 1.08994 * 109.46923 * 299.74126 * 1 2 3 32 32 H 1.09000 * 109.46867 * 59.74464 * 1 2 3 33 33 H 1.09001 * 109.49218 * 28.08437 * 4 2 1 34 34 H 1.09002 * 109.49192 * 268.01689 * 4 2 1 35 35 H 1.09003 * 108.51255 * 323.76117 * 5 4 2 36 36 H 1.08997 * 108.39661 * 206.17553 * 5 4 2 37 37 H 1.09000 * 109.32901 * 176.93860 * 6 5 4 38 38 H 1.09008 * 109.32484 * 57.46918 * 6 5 4 39 39 H 1.08999 * 109.47181 * 317.40932 * 9 7 6 40 40 H 1.09001 * 109.46868 * 77.40377 * 9 7 6 41 41 H 1.08996 * 109.47158 * 197.40449 * 9 7 6 42 42 H 0.96996 * 120.00604 * 0.02562 * 15 13 11 43 43 H 1.08004 * 125.81182 * 0.03226 * 17 16 15 44 44 H 0.96996 * 120.00323 * 180.02562 * 23 22 20 45 45 H 1.08002 * 126.25144 * 359.94753 * 28 16 15 46 46 H 1.09003 * 108.94543 * 162.56127 * 29 10 7 47 47 H 1.08999 * 108.94851 * 281.18539 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8915 1.0283 0.0000 4 6 2.0304 -0.7062 -1.2359 5 6 3.3503 -0.0806 -1.6765 6 6 4.5356 -0.6249 -0.9964 7 6 4.4634 -0.3372 0.5234 8 1 4.2230 0.7140 0.6828 9 6 5.8153 -0.6536 1.1662 10 7 3.4395 -1.1618 1.1251 11 6 3.7788 -2.3847 1.5788 12 8 4.9109 -2.7952 1.4283 13 6 2.7633 -3.2319 2.2719 14 8 1.6696 -2.7755 2.5352 15 7 3.0610 -4.5034 2.6053 16 6 2.1067 -5.2996 3.2561 17 6 0.8085 -4.9023 3.6260 18 7 0.2167 -5.9150 4.2067 19 7 1.1118 -6.9917 4.2394 20 6 0.8644 -8.2323 4.7729 21 1 1.6291 -8.9946 4.7448 22 6 -0.3702 -8.5074 5.3493 23 7 -1.2999 -7.5811 5.3831 24 14 -0.7071 -10.1956 6.0745 25 1 0.2657 -10.4701 7.1624 26 1 -2.0868 -10.2325 6.6226 27 1 -0.5684 -11.2263 5.0145 28 6 2.2730 -6.5896 3.6464 29 6 2.0368 -0.7219 1.2575 30 1 -0.3633 -1.0277 -0.0046 31 1 -0.3633 0.5098 0.8923 32 1 -0.3633 0.5178 -0.8877 33 1 1.2957 -0.6055 -2.0348 34 1 2.1845 -1.7622 -1.0141 35 1 3.3051 0.9920 -1.4875 36 1 3.4642 -0.2374 -2.7491 37 1 5.4323 -0.1626 -1.4090 38 1 4.5813 -1.7020 -1.1580 39 1 6.2023 -1.5871 0.7576 40 1 6.5162 0.1539 0.9544 41 1 5.6906 -0.7530 2.2444 42 1 3.9349 -4.8680 2.3953 43 1 0.3733 -3.9283 3.4567 44 1 -2.1613 -7.7729 5.7856 45 1 3.1619 -7.1880 3.5117 46 1 1.4086 -1.5933 1.4426 47 1 1.9572 -0.0436 2.1070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746419088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:33 Heat of formation + Delta-G solvation = 15.994812 kcal Electronic energy + Delta-G solvation = -29717.101978 eV Core-core repulsion = 25709.060493 eV Total energy + Delta-G solvation = -4008.041485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.42371 -41.51528 -39.93230 -38.88998 -36.28243 -35.55486 -35.10696 -34.52346 -32.29568 -31.22305 -29.84878 -27.53505 -27.36238 -26.90556 -25.58945 -23.90652 -22.89106 -22.17915 -21.37154 -21.07351 -20.49927 -19.40807 -18.38146 -17.51571 -17.44170 -17.22821 -16.96562 -16.66299 -16.00011 -15.80049 -15.68636 -15.41026 -15.35155 -15.00780 -14.87404 -14.76136 -13.99710 -13.73896 -13.51642 -13.50235 -13.35870 -13.34400 -13.17895 -12.91369 -12.89235 -12.87143 -12.57571 -12.47303 -12.13367 -11.97597 -11.75654 -11.62718 -11.45971 -11.18610 -11.14444 -11.01194 -10.86413 -10.13766 -9.91194 -9.68740 -8.61336 -8.48750 -6.26474 0.30573 1.30441 1.32544 1.42284 1.56867 1.72876 2.03930 2.11572 2.44787 2.53460 2.84210 3.07584 3.40361 3.65774 3.80383 3.90884 4.02056 4.12562 4.25670 4.37930 4.39447 4.52219 4.58143 4.65623 4.69525 4.78738 4.82272 4.85386 4.93400 4.95485 4.97941 5.03676 5.09548 5.14277 5.23861 5.25739 5.27607 5.30589 5.39328 5.41621 5.45194 5.52914 5.73071 5.91645 6.05196 6.22518 6.42685 6.68575 6.85386 7.09712 7.40993 7.63165 8.50164 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.002677 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.313744 B =10456.812427 C =11292.478501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.089 0.911 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.122 4.122 7 C 0.136 3.864 8 H 0.106 0.894 9 C -0.151 4.151 10 N -0.560 5.560 11 C 0.512 3.488 12 O -0.531 6.531 13 C 0.481 3.519 14 O -0.528 6.528 15 N -0.582 5.582 16 C -0.056 4.056 17 C -0.046 4.046 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.355 4.355 21 H 0.140 0.860 22 C -0.004 4.004 23 N -0.820 5.820 24 Si 1.019 2.981 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.254 1.254 28 C -0.076 4.076 29 C 0.066 3.934 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.421 0.579 43 H 0.178 0.822 44 H 0.278 0.722 45 H 0.186 0.814 46 H 0.123 0.877 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.768 14.382 -12.138 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.160 4.160 7 C 0.034 3.966 8 H 0.124 0.876 9 C -0.208 4.208 10 N -0.291 5.291 11 C 0.294 3.706 12 O -0.410 6.410 13 C 0.264 3.736 14 O -0.407 6.407 15 N -0.226 5.226 16 C -0.163 4.163 17 C -0.221 4.221 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.486 4.486 21 H 0.158 0.842 22 C -0.216 4.216 23 N -0.448 5.448 24 Si 0.837 3.163 25 H -0.178 1.178 26 H -0.201 1.201 27 H -0.178 1.178 28 C -0.227 4.227 29 C -0.055 4.055 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.259 0.741 43 H 0.194 0.806 44 H 0.088 0.912 45 H 0.203 0.797 46 H 0.140 0.860 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.322 14.177 -11.422 20.017 hybrid contribution 0.693 -0.558 0.066 0.892 sum 9.016 13.619 -11.355 19.892 Atomic orbital electron populations 1.21816 0.93907 1.01664 1.02676 1.21260 0.96453 0.99980 0.93571 0.89297 1.21187 0.97705 0.98867 0.97358 1.20454 0.93375 1.01074 1.00458 1.21217 0.99834 1.01117 0.93880 1.21502 0.87139 0.94934 0.93033 0.87636 1.22229 0.95785 1.03115 0.99717 1.47775 1.11146 1.13841 1.56385 1.19762 0.87230 0.83210 0.80349 1.90712 1.20373 1.72133 1.57742 1.20498 0.88337 0.82805 0.81986 1.90386 1.24569 1.71566 1.54191 1.42126 1.16126 1.10474 1.53848 1.17297 0.92434 0.92315 1.14228 1.24261 0.93665 0.99790 1.04402 1.78155 1.16092 0.94162 1.25460 1.44821 1.06995 1.09083 1.32195 1.20607 1.02656 0.86850 1.38463 0.84216 1.26861 0.94402 1.04255 0.96086 1.70365 1.04617 1.35075 1.34705 0.84657 0.78097 0.74609 0.78896 1.17812 1.20147 1.17795 1.21985 0.94359 0.95997 1.10397 1.23289 0.80341 1.03678 0.98202 0.93923 0.92242 0.90723 0.90736 0.94512 0.90428 0.91422 0.88711 0.93748 0.90819 0.90438 0.94492 0.74116 0.80557 0.91227 0.79728 0.86014 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.87 71.98 0.64 -1.89 16 2 C -0.09 -1.66 2.54 -11.28 -0.03 -1.69 16 3 H 0.09 1.24 7.32 -2.39 -0.02 1.22 16 4 C -0.11 -2.03 5.02 29.76 0.15 -1.88 16 5 C -0.12 -1.63 5.15 28.61 0.15 -1.49 16 6 C -0.12 -2.00 4.99 29.39 0.15 -1.85 16 7 C 0.14 2.55 2.57 45.98 0.12 2.67 16 8 H 0.11 1.54 8.07 -2.39 -0.02 1.52 16 9 C -0.15 -3.05 7.81 71.98 0.56 -2.49 16 10 N -0.56 -13.72 2.21 -796.45 -1.76 -15.48 16 11 C 0.51 15.53 7.20 87.23 0.63 16.16 16 12 O -0.53 -16.63 12.86 -3.29 -0.04 -16.67 16 13 C 0.48 17.30 7.69 87.23 0.67 17.97 16 14 O -0.53 -20.82 10.10 -3.42 -0.03 -20.85 16 15 N -0.58 -21.68 5.44 -305.33 -1.66 -23.34 16 16 C -0.06 -2.60 6.90 37.83 0.26 -2.34 16 17 C -0.05 -2.41 10.84 85.44 0.93 -1.48 16 18 N -0.31 -18.12 10.39 -56.43 -0.59 -18.70 16 19 N -0.16 -8.97 3.73 -189.97 -0.71 -9.68 16 20 C -0.35 -18.63 10.25 84.02 0.86 -17.77 16 21 H 0.14 6.37 7.83 -2.91 -0.02 6.35 16 22 C 0.00 -0.19 5.50 84.96 0.47 0.27 16 23 N -0.82 -46.51 11.81 21.66 0.26 -46.25 16 24 Si 1.02 38.08 29.55 68.60 2.03 40.11 16 25 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 26 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 27 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 28 C -0.08 -3.57 11.50 83.41 0.96 -2.61 16 29 C 0.07 1.56 4.86 86.37 0.42 1.98 16 30 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 33 H 0.07 1.18 7.74 -2.39 -0.02 1.16 16 34 H 0.04 0.86 7.48 -2.39 -0.02 0.84 16 35 H 0.08 0.84 7.36 -2.39 -0.02 0.82 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 38 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.07 1.78 6.07 -2.39 -0.01 1.76 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.04 0.88 7.62 -2.39 -0.02 0.86 16 42 H 0.42 13.40 8.31 -92.71 -0.77 12.63 16 43 H 0.18 9.05 5.92 -2.91 -0.02 9.03 16 44 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.19 6.95 8.06 -2.91 -0.02 6.93 16 46 H 0.12 3.72 4.10 -64.42 -0.26 3.46 16 47 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -68.83 368.31 4.39 -64.45 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -0.03 Total: 42.86 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 6.93 Total: 3.57 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.46 Total: -113.47 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.08 Total: -37.52 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -68.83 4.39 -64.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746419088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.441 kcal (2) G-P(sol) polarization free energy of solvation -68.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds