Wall clock time and date at job start Tue Mar 31 2020 19:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 108.45783 * 2 1 4 4 C 1.52527 * 108.52126 * 242.28887 * 2 1 3 5 5 C 1.50127 * 105.41256 * 149.50893 * 4 2 1 6 6 C 1.54840 * 110.81920 * 97.67996 * 5 4 2 7 7 C 1.54900 * 110.14155 * 321.13390 * 6 5 4 8 8 H 1.09004 * 108.15961 * 80.35181 * 7 6 5 9 9 C 1.52999 * 108.15964 * 196.91878 * 7 6 5 10 10 N 1.43434 * 116.08147 * 318.63917 * 7 6 5 11 11 C 1.34775 * 120.53614 * 271.54532 * 10 7 6 12 12 O 1.21372 * 119.99843 * 3.76715 * 11 10 7 13 13 C 1.49304 * 119.99994 * 183.76615 * 11 10 7 14 14 O 1.21410 * 120.00091 * 353.54506 * 13 11 10 15 15 N 1.34783 * 119.99937 * 173.54066 * 13 11 10 16 16 C 1.40295 * 119.99584 * 180.02562 * 15 13 11 17 17 C 1.40718 * 126.10528 * 359.69127 * 16 15 13 18 18 N 1.30873 * 108.37842 * 180.26579 * 17 16 15 19 19 N 1.40057 * 108.43539 * 359.97438 * 18 17 16 20 20 C 1.37294 * 126.05597 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00271 * 180.02562 * 20 19 18 22 22 C 1.39007 * 119.99892 * 0.02562 * 20 19 18 23 23 N 1.31283 * 120.00029 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00051 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47141 * 0.02562 * 24 22 20 26 26 H 1.48510 * 109.47145 * 119.99827 * 24 22 20 27 27 H 1.48502 * 109.47360 * 239.99882 * 24 22 20 28 28 C 1.35791 * 126.09535 * 180.02562 * 16 15 13 29 29 C 1.46762 * 108.33694 * 117.72548 * 2 1 3 30 30 H 1.08997 * 109.46712 * 177.70780 * 1 2 3 31 31 H 1.08995 * 109.47244 * 297.71303 * 1 2 3 32 32 H 1.09006 * 109.46795 * 57.71165 * 1 2 3 33 33 H 1.08992 * 110.25340 * 30.53344 * 4 2 1 34 34 H 1.09000 * 110.36858 * 268.54104 * 4 2 1 35 35 H 1.08998 * 109.20855 * 337.33480 * 5 4 2 36 36 H 1.09002 * 109.20811 * 218.02774 * 5 4 2 37 37 H 1.08996 * 109.36300 * 200.92179 * 6 5 4 38 38 H 1.09001 * 109.35557 * 81.33858 * 6 5 4 39 39 H 1.09003 * 109.46833 * 169.91471 * 9 7 6 40 40 H 1.08999 * 109.47244 * 289.91564 * 9 7 6 41 41 H 1.08997 * 109.46789 * 49.91740 * 9 7 6 42 42 H 0.96997 * 120.00082 * 0.02562 * 15 13 11 43 43 H 1.08002 * 125.80920 * 0.25904 * 17 16 15 44 44 H 0.97002 * 119.99729 * 179.97438 * 23 22 20 45 45 H 1.07997 * 126.24867 * 359.75551 * 28 16 15 46 46 H 1.08998 * 109.95287 * 60.23136 * 29 2 1 47 47 H 1.08998 * 110.00349 * 299.07264 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8752 1.0340 0.0000 4 6 2.0145 -0.6725 -1.2804 5 6 3.3238 -0.0141 -1.6061 6 6 4.5111 -0.8713 -1.1029 7 6 4.1718 -1.4971 0.2728 8 1 3.5498 -2.3758 0.1022 9 6 5.4775 -1.9649 0.9189 10 7 3.4931 -0.6430 1.2040 11 6 4.1916 0.1472 2.0431 12 8 5.4023 0.1913 1.9685 13 6 3.4762 0.9684 3.0643 14 8 2.2631 1.0159 3.0638 15 7 4.1772 1.6571 3.9868 16 6 3.5049 2.4283 4.9468 17 6 2.1104 2.5791 5.0609 18 7 1.8627 3.3758 6.0692 19 7 3.0827 3.7637 6.6373 20 6 3.2428 4.5970 7.7166 21 1 4.2342 4.8323 8.0749 22 6 2.1289 5.1378 8.3484 23 7 0.9239 4.8515 7.9132 24 14 2.3467 6.2721 9.8165 25 1 3.7942 6.4350 10.1058 26 1 1.7514 7.5978 9.5105 27 1 1.6678 5.6859 11.0000 28 6 4.0839 3.1676 5.9276 29 6 1.9918 -0.6481 1.2332 30 1 -0.3632 -1.0268 -0.0411 31 1 -0.3633 0.4779 0.9097 32 1 -0.3633 0.5490 -0.8688 33 1 1.2993 -0.5091 -2.0864 34 1 2.1597 -1.7403 -1.1165 35 1 3.3611 0.9653 -1.1292 36 1 3.4037 0.1105 -2.6860 37 1 5.3955 -0.2418 -1.0053 38 1 4.7131 -1.6658 -1.8214 39 1 5.2902 -2.2437 1.9559 40 1 5.8636 -2.8269 0.3750 41 1 6.2087 -1.1572 0.8862 42 1 5.1464 1.6194 3.9871 43 1 1.3706 2.1161 4.4247 44 1 0.1466 5.2286 8.3543 45 1 5.1435 3.2655 6.1123 46 1 1.6259 -1.6741 1.2736 47 1 1.6366 -0.0932 2.1015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746419091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:43 Heat of formation + Delta-G solvation = 39.218361 kcal Electronic energy + Delta-G solvation = -29733.702687 eV Core-core repulsion = 25726.668251 eV Total energy + Delta-G solvation = -4007.034436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.14336 -39.81138 -38.56123 -37.84847 -34.83271 -34.55047 -33.51405 -33.09243 -30.37873 -30.13996 -28.07807 -26.49257 -26.31773 -25.35031 -24.29670 -22.90283 -21.26610 -20.95759 -20.30629 -19.54894 -19.07514 -17.74799 -17.18559 -16.17275 -15.84241 -15.69361 -15.49325 -15.30112 -14.97258 -14.87345 -14.42389 -14.16763 -13.91131 -13.76463 -13.25825 -13.07516 -12.96806 -12.82341 -12.53638 -12.46435 -12.25298 -11.90488 -11.83959 -11.74020 -11.45704 -11.42279 -11.32302 -11.01672 -10.90180 -10.72913 -10.59663 -10.54240 -10.40291 -10.34060 -9.92832 -9.26396 -8.92112 -8.74754 -8.55264 -8.15613 -6.81224 -6.62841 -4.30114 1.65788 2.57975 2.90962 3.02724 3.08459 3.30690 3.63419 3.69216 3.82993 4.34233 4.45869 4.55300 4.69005 4.69437 4.88994 4.94061 4.96039 4.97666 5.09673 5.27472 5.36861 5.42395 5.52771 5.59104 5.65430 5.66791 5.78283 5.86894 5.96998 6.00891 6.04314 6.11092 6.17180 6.18913 6.21905 6.29491 6.33259 6.35698 6.63241 6.74600 6.86416 7.06458 7.15866 7.22135 7.73516 7.85093 8.13432 8.16316 8.48157 8.67412 9.28570 9.57234 10.32922 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.002667 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.706391 B =10496.764627 C =11383.683300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.127 4.127 7 C 0.141 3.859 8 H 0.076 0.924 9 C -0.165 4.165 10 N -0.575 5.575 11 C 0.516 3.484 12 O -0.526 6.526 13 C 0.486 3.514 14 O -0.514 6.514 15 N -0.579 5.579 16 C -0.071 4.071 17 C -0.025 4.025 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.321 4.321 21 H 0.119 0.881 22 C 0.046 3.954 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.077 4.077 29 C 0.061 3.939 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.409 0.591 43 H 0.178 0.822 44 H 0.275 0.725 45 H 0.149 0.851 46 H 0.065 0.935 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.645 -10.925 -14.771 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.166 4.166 7 C 0.036 3.964 8 H 0.094 0.906 9 C -0.222 4.222 10 N -0.307 5.307 11 C 0.299 3.701 12 O -0.403 6.403 13 C 0.268 3.732 14 O -0.394 6.394 15 N -0.220 5.220 16 C -0.177 4.177 17 C -0.201 4.201 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.393 5.393 24 Si 0.759 3.241 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.198 1.198 28 C -0.228 4.228 29 C -0.057 4.057 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.245 0.755 43 H 0.195 0.805 44 H 0.086 0.914 45 H 0.166 0.834 46 H 0.083 0.917 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.310 -10.241 -14.052 17.541 hybrid contribution 1.288 -0.051 -0.080 1.291 sum 3.598 -10.292 -14.132 17.849 Atomic orbital electron populations 1.21891 0.94681 1.01597 1.02344 1.20520 0.96442 1.00908 0.94766 0.90916 1.21196 0.96805 0.99993 0.97320 1.21566 0.94476 0.99471 1.00326 1.22657 0.98607 0.99829 0.95483 1.20747 0.94565 0.91813 0.89251 0.90586 1.22440 0.97946 1.01798 1.00063 1.47993 1.08174 1.40611 1.33960 1.20111 0.87051 0.80613 0.82337 1.90681 1.13624 1.64482 1.71471 1.19803 0.87487 0.82696 0.83229 1.90176 1.13399 1.63333 1.72471 1.42177 1.09981 1.42859 1.27013 1.17262 0.92284 1.09164 0.99013 1.24139 0.93404 1.02525 1.00007 1.78263 1.02681 1.17497 1.10675 1.44570 1.02656 1.25676 1.17564 1.19977 0.95587 1.24296 1.05510 0.86394 1.25666 0.94550 0.97692 0.99216 1.70214 0.97990 1.35280 1.35818 0.85744 0.79387 0.79229 0.79690 1.18620 1.19854 1.19848 1.21312 0.94325 1.07244 0.99953 1.22912 0.76448 1.02897 1.03471 0.92874 0.91850 0.92766 0.91572 0.91506 0.91891 0.92542 0.91427 0.91064 0.92801 0.93134 0.89110 0.75546 0.80512 0.91398 0.83385 0.91681 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.86 37.16 0.33 -1.10 16 2 C -0.11 -1.15 2.23 -93.84 -0.21 -1.36 16 3 H 0.07 0.93 6.93 -51.93 -0.36 0.57 16 4 C -0.12 -1.04 5.18 -28.40 -0.15 -1.18 16 5 C -0.12 -1.16 5.65 -27.19 -0.15 -1.31 16 6 C -0.13 -1.22 5.72 -24.76 -0.14 -1.36 16 7 C 0.14 1.51 2.16 -68.55 -0.15 1.36 16 8 H 0.08 0.71 6.89 -51.93 -0.36 0.35 16 9 C -0.17 -1.85 7.75 37.16 0.29 -1.56 16 10 N -0.57 -7.33 2.49 -168.12 -0.42 -7.75 16 11 C 0.52 7.89 7.24 -11.65 -0.08 7.80 16 12 O -0.53 -8.46 13.22 5.48 0.07 -8.38 16 13 C 0.49 8.52 7.78 -11.65 -0.09 8.43 16 14 O -0.51 -9.62 10.12 5.44 0.06 -9.56 16 15 N -0.58 -10.65 5.45 -10.45 -0.06 -10.71 16 16 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 17 C -0.02 -0.63 10.84 -17.02 -0.18 -0.81 16 18 N -0.26 -7.32 10.39 30.81 0.32 -7.00 16 19 N -0.14 -3.69 3.73 -11.40 -0.04 -3.74 16 20 C -0.32 -8.31 10.25 -14.82 -0.15 -8.46 16 21 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 23 N -0.77 -20.85 11.81 55.50 0.66 -20.20 16 24 Si 0.94 18.50 29.55 -169.99 -5.02 13.48 16 25 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 27 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 28 C -0.08 -1.78 11.50 -16.38 -0.19 -1.96 16 29 C 0.06 0.73 4.95 -4.97 -0.02 0.71 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 32 H 0.05 0.49 8.09 -51.93 -0.42 0.06 16 33 H 0.07 0.54 7.80 -51.93 -0.41 0.13 16 34 H 0.07 0.56 6.30 -51.93 -0.33 0.23 16 35 H 0.06 0.72 6.83 -51.93 -0.35 0.37 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.73 7.83 -51.93 -0.41 0.32 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.67 7.79 -51.93 -0.40 0.26 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 1.18 5.85 -51.93 -0.30 0.88 16 42 H 0.41 6.56 8.31 -40.82 -0.34 6.22 16 43 H 0.18 4.24 5.92 -52.49 -0.31 3.93 16 44 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 46 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 47 H 0.17 2.40 3.92 -56.65 -0.22 2.18 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -29.96 366.04 -7.22 -37.18 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -6.71 Total: 13.07 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.58 Total: -1.91 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.46 Total: -49.39 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.13 Total: -17.95 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.96 -7.22 -37.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746419091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.400 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds