Wall clock time and date at job start Tue Mar 31 2020 19:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 108.45783 * 2 1 4 4 C 1.52527 * 108.52126 * 242.28887 * 2 1 3 5 5 C 1.50127 * 105.41256 * 149.50893 * 4 2 1 6 6 C 1.54840 * 110.81920 * 97.67996 * 5 4 2 7 7 C 1.54900 * 110.14155 * 321.13390 * 6 5 4 8 8 H 1.09004 * 108.15961 * 80.35181 * 7 6 5 9 9 C 1.52999 * 108.15964 * 196.91878 * 7 6 5 10 10 N 1.43434 * 116.08147 * 318.63917 * 7 6 5 11 11 C 1.34775 * 120.53614 * 271.54532 * 10 7 6 12 12 O 1.21372 * 119.99843 * 3.76715 * 11 10 7 13 13 C 1.49304 * 119.99994 * 183.76615 * 11 10 7 14 14 O 1.21410 * 120.00091 * 353.54506 * 13 11 10 15 15 N 1.34783 * 119.99937 * 173.54066 * 13 11 10 16 16 C 1.40295 * 119.99584 * 180.02562 * 15 13 11 17 17 C 1.40718 * 126.10528 * 359.69127 * 16 15 13 18 18 N 1.30873 * 108.37842 * 180.26579 * 17 16 15 19 19 N 1.40057 * 108.43539 * 359.97438 * 18 17 16 20 20 C 1.37294 * 126.05597 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00271 * 180.02562 * 20 19 18 22 22 C 1.39007 * 119.99892 * 0.02562 * 20 19 18 23 23 N 1.31283 * 120.00029 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00051 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47141 * 0.02562 * 24 22 20 26 26 H 1.48510 * 109.47145 * 119.99827 * 24 22 20 27 27 H 1.48502 * 109.47360 * 239.99882 * 24 22 20 28 28 C 1.35791 * 126.09535 * 180.02562 * 16 15 13 29 29 C 1.46762 * 108.33694 * 117.72548 * 2 1 3 30 30 H 1.08997 * 109.46712 * 177.70780 * 1 2 3 31 31 H 1.08995 * 109.47244 * 297.71303 * 1 2 3 32 32 H 1.09006 * 109.46795 * 57.71165 * 1 2 3 33 33 H 1.08992 * 110.25340 * 30.53344 * 4 2 1 34 34 H 1.09000 * 110.36858 * 268.54104 * 4 2 1 35 35 H 1.08998 * 109.20855 * 337.33480 * 5 4 2 36 36 H 1.09002 * 109.20811 * 218.02774 * 5 4 2 37 37 H 1.08996 * 109.36300 * 200.92179 * 6 5 4 38 38 H 1.09001 * 109.35557 * 81.33858 * 6 5 4 39 39 H 1.09003 * 109.46833 * 169.91471 * 9 7 6 40 40 H 1.08999 * 109.47244 * 289.91564 * 9 7 6 41 41 H 1.08997 * 109.46789 * 49.91740 * 9 7 6 42 42 H 0.96997 * 120.00082 * 0.02562 * 15 13 11 43 43 H 1.08002 * 125.80920 * 0.25904 * 17 16 15 44 44 H 0.97002 * 119.99729 * 179.97438 * 23 22 20 45 45 H 1.07997 * 126.24867 * 359.75551 * 28 16 15 46 46 H 1.08998 * 109.95287 * 60.23136 * 29 2 1 47 47 H 1.08998 * 110.00349 * 299.07264 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8752 1.0340 0.0000 4 6 2.0145 -0.6725 -1.2804 5 6 3.3238 -0.0141 -1.6061 6 6 4.5111 -0.8713 -1.1029 7 6 4.1718 -1.4971 0.2728 8 1 3.5498 -2.3758 0.1022 9 6 5.4775 -1.9649 0.9189 10 7 3.4931 -0.6430 1.2040 11 6 4.1916 0.1472 2.0431 12 8 5.4023 0.1913 1.9685 13 6 3.4762 0.9684 3.0643 14 8 2.2631 1.0159 3.0638 15 7 4.1772 1.6571 3.9868 16 6 3.5049 2.4283 4.9468 17 6 2.1104 2.5791 5.0609 18 7 1.8627 3.3758 6.0692 19 7 3.0827 3.7637 6.6373 20 6 3.2428 4.5970 7.7166 21 1 4.2342 4.8323 8.0749 22 6 2.1289 5.1378 8.3484 23 7 0.9239 4.8515 7.9132 24 14 2.3467 6.2721 9.8165 25 1 3.7942 6.4350 10.1058 26 1 1.7514 7.5978 9.5105 27 1 1.6678 5.6859 11.0000 28 6 4.0839 3.1676 5.9276 29 6 1.9918 -0.6481 1.2332 30 1 -0.3632 -1.0268 -0.0411 31 1 -0.3633 0.4779 0.9097 32 1 -0.3633 0.5490 -0.8688 33 1 1.2993 -0.5091 -2.0864 34 1 2.1597 -1.7403 -1.1165 35 1 3.3611 0.9653 -1.1292 36 1 3.4037 0.1105 -2.6860 37 1 5.3955 -0.2418 -1.0053 38 1 4.7131 -1.6658 -1.8214 39 1 5.2902 -2.2437 1.9559 40 1 5.8636 -2.8269 0.3750 41 1 6.2087 -1.1572 0.8862 42 1 5.1464 1.6194 3.9871 43 1 1.3706 2.1161 4.4247 44 1 0.1466 5.2286 8.3543 45 1 5.1435 3.2655 6.1123 46 1 1.6259 -1.6741 1.2736 47 1 1.6366 -0.0932 2.1015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746419091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:42 Heat of formation + Delta-G solvation = 20.743527 kcal Electronic energy + Delta-G solvation = -29734.503816 eV Core-core repulsion = 25726.668251 eV Total energy + Delta-G solvation = -4007.835565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.38607 -41.51192 -39.95175 -39.01627 -36.25108 -35.63446 -35.07250 -34.34642 -32.29289 -31.08195 -29.85068 -27.59310 -27.21412 -26.89631 -25.62032 -24.00868 -22.90235 -22.17297 -21.36816 -21.25134 -20.28576 -19.42932 -18.51925 -17.46744 -17.37334 -17.05277 -16.80891 -16.70806 -16.03346 -15.93801 -15.69677 -15.43375 -15.33722 -15.11177 -14.82518 -14.71571 -14.10402 -13.69026 -13.52552 -13.47296 -13.35758 -13.29211 -13.13299 -12.94021 -12.90003 -12.77682 -12.60083 -12.34255 -12.03162 -11.99833 -11.78164 -11.70068 -11.37080 -11.21442 -11.09163 -10.95311 -10.86315 -10.13706 -9.87603 -9.76830 -8.62128 -8.48995 -6.26342 0.30502 1.28672 1.31920 1.42446 1.59768 1.72222 2.05187 2.10802 2.43257 2.54198 2.83318 3.07554 3.37935 3.73489 3.84145 3.91868 4.07469 4.13181 4.27351 4.38466 4.39964 4.52162 4.54226 4.59205 4.71890 4.80023 4.85684 4.86850 4.89028 4.95565 4.98494 5.00883 5.05555 5.18911 5.21111 5.23386 5.26714 5.36845 5.40287 5.42243 5.48572 5.59152 5.72610 5.92481 6.08414 6.22550 6.41924 6.69333 6.86922 7.11536 7.41186 7.63459 8.50286 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.002667 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.706391 B =10496.764627 C =11383.683300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.045 0.955 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.122 4.122 7 C 0.132 3.868 8 H 0.103 0.897 9 C -0.160 4.160 10 N -0.565 5.565 11 C 0.518 3.482 12 O -0.535 6.535 13 C 0.485 3.515 14 O -0.525 6.525 15 N -0.581 5.581 16 C -0.057 4.057 17 C -0.044 4.044 18 N -0.307 5.307 19 N -0.164 5.164 20 C -0.353 4.353 21 H 0.140 0.860 22 C -0.004 4.004 23 N -0.820 5.820 24 Si 1.019 2.981 25 H -0.243 1.243 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.076 4.076 29 C 0.061 3.939 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.422 0.578 43 H 0.179 0.821 44 H 0.278 0.722 45 H 0.185 0.815 46 H 0.090 0.910 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -12.430 -16.183 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.063 0.937 4 C -0.145 4.145 5 C -0.158 4.158 6 C -0.160 4.160 7 C 0.029 3.971 8 H 0.120 0.880 9 C -0.217 4.217 10 N -0.296 5.296 11 C 0.300 3.700 12 O -0.413 6.413 13 C 0.268 3.732 14 O -0.405 6.405 15 N -0.225 5.225 16 C -0.163 4.163 17 C -0.220 4.220 18 N -0.139 5.139 19 N 0.068 4.932 20 C -0.484 4.484 21 H 0.158 0.842 22 C -0.216 4.216 23 N -0.447 5.447 24 Si 0.838 3.162 25 H -0.165 1.165 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.227 4.227 29 C -0.057 4.057 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.259 0.741 43 H 0.195 0.805 44 H 0.087 0.913 45 H 0.202 0.798 46 H 0.108 0.892 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.538 -11.782 -15.511 19.797 hybrid contribution 0.925 0.265 0.167 0.976 sum 4.463 -11.517 -15.344 19.698 Atomic orbital electron populations 1.21863 0.93861 1.02684 1.01759 1.20455 0.97078 0.99434 0.95324 0.93696 1.21170 0.96521 1.00473 0.96317 1.21547 0.94958 0.98200 1.01077 1.22647 0.97829 1.00361 0.95189 1.21058 0.94671 0.92164 0.89208 0.87952 1.22354 0.97688 1.02076 0.99621 1.48094 1.08606 1.39585 1.33338 1.19661 0.86819 0.81052 0.82488 1.90696 1.13716 1.65006 1.71893 1.20460 0.87511 0.82101 0.83086 1.90235 1.14218 1.63333 1.72706 1.42134 1.10531 1.43040 1.26792 1.17297 0.91473 1.08415 0.99119 1.24269 0.94888 1.02863 0.99979 1.78154 1.04610 1.19011 1.12088 1.44832 1.02828 1.26911 1.18589 1.20672 0.97010 1.24834 1.05891 0.84236 1.26857 0.93794 0.98891 1.02105 1.70377 0.99145 1.37276 1.37928 0.84540 0.80262 0.76340 0.75099 1.16531 1.19731 1.19671 1.21986 0.95578 1.06011 0.99115 1.22830 0.75887 1.04016 1.03001 0.91015 0.93821 0.91916 0.90170 0.89903 0.94593 0.90956 0.93035 0.88186 0.94348 0.90458 0.91174 0.74106 0.80452 0.91253 0.79763 0.89193 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.86 71.98 0.64 -1.97 16 2 C -0.10 -2.09 2.23 -12.88 -0.03 -2.12 16 3 H 0.04 1.16 6.93 -2.38 -0.02 1.14 16 4 C -0.11 -1.59 5.18 29.51 0.15 -1.44 16 5 C -0.12 -2.03 5.65 30.30 0.17 -1.86 16 6 C -0.12 -1.98 5.72 31.87 0.18 -1.80 16 7 C 0.13 2.48 2.16 46.21 0.10 2.58 16 8 H 0.10 1.46 6.89 -2.38 -0.02 1.44 16 9 C -0.16 -3.25 7.75 71.98 0.56 -2.69 16 10 N -0.56 -13.69 2.49 -804.17 -2.00 -15.69 16 11 C 0.52 15.68 7.24 87.22 0.63 16.32 16 12 O -0.53 -16.99 13.22 -3.32 -0.04 -17.04 16 13 C 0.49 17.28 7.78 87.22 0.68 17.96 16 14 O -0.53 -20.31 10.12 -3.43 -0.03 -20.34 16 15 N -0.58 -21.50 5.45 -305.32 -1.66 -23.17 16 16 C -0.06 -2.60 6.90 37.82 0.26 -2.34 16 17 C -0.04 -2.32 10.84 85.44 0.93 -1.40 16 18 N -0.31 -18.03 10.39 -56.44 -0.59 -18.61 16 19 N -0.16 -8.98 3.73 -189.97 -0.71 -9.68 16 20 C -0.35 -18.48 10.25 84.02 0.86 -17.62 16 21 H 0.14 6.38 7.83 -2.91 -0.02 6.36 16 22 C 0.00 -0.22 5.50 84.96 0.47 0.25 16 23 N -0.82 -46.34 11.81 21.66 0.26 -46.08 16 24 Si 1.02 38.08 29.55 68.60 2.03 40.10 16 25 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 26 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 27 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 28 C -0.08 -3.53 11.50 83.41 0.96 -2.57 16 29 C 0.06 1.39 4.95 83.73 0.41 1.81 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.96 8.13 -2.39 -0.02 0.94 16 32 H 0.06 1.03 8.09 -2.38 -0.02 1.01 16 33 H 0.08 1.01 7.80 -2.39 -0.02 0.99 16 34 H 0.08 1.00 6.30 -2.39 -0.02 0.99 16 35 H 0.04 0.80 6.83 -2.39 -0.02 0.79 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 1.02 7.83 -2.39 -0.02 1.00 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.04 0.89 7.79 -2.39 -0.02 0.87 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.74 5.85 -2.39 -0.01 1.73 16 42 H 0.42 13.35 8.31 -92.71 -0.77 12.58 16 43 H 0.18 8.98 5.92 -2.91 -0.02 8.97 16 44 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 45 H 0.19 6.92 8.06 -2.91 -0.02 6.89 16 46 H 0.09 1.63 8.12 -2.39 -0.02 1.61 16 47 H 0.14 4.07 3.92 -77.06 -0.30 3.76 16 Total: -1.00 -68.73 366.04 4.16 -64.57 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.05 Total: 42.85 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 6.97 Total: 3.11 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -4.70 Total: -113.24 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.08 Total: -37.38 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.10 kcal Total: -68.73 4.16 -64.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746419091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.312 kcal (2) G-P(sol) polarization free energy of solvation -68.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds