Wall clock time and date at job start Tue Mar 31 2020 19:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.62726 * 2 1 4 4 C 1.50483 * 109.62858 * 120.38357 * 2 1 3 5 5 C 1.54060 * 112.49862 * 214.06197 * 4 2 1 6 6 C 1.54075 * 112.81856 * 318.28016 * 5 4 2 7 7 C 1.50471 * 112.49470 * 318.28597 * 6 5 4 8 8 H 1.08994 * 109.63150 * 334.23955 * 7 6 5 9 9 N 1.46504 * 109.62478 * 213.85914 * 7 6 5 10 10 C 1.34771 * 120.00038 * 85.00468 * 9 7 6 11 11 O 1.21363 * 120.00244 * 359.97438 * 10 9 7 12 12 C 1.49310 * 119.99873 * 179.97438 * 10 9 7 13 13 O 1.21402 * 120.00114 * 359.97438 * 12 10 9 14 14 N 1.34780 * 120.00046 * 179.97438 * 12 10 9 15 15 C 1.40290 * 119.99962 * 179.97438 * 14 12 10 16 16 C 1.40718 * 126.10091 * 359.97438 * 15 14 12 17 17 N 1.30882 * 108.37602 * 180.02562 * 16 15 14 18 18 N 1.40062 * 108.43633 * 359.97438 * 17 16 15 19 19 C 1.37286 * 126.05276 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99876 * 174.09173 * 19 18 17 21 21 C 1.39010 * 120.00616 * 354.09703 * 19 18 17 22 22 N 1.31277 * 119.99387 * 5.92608 * 21 19 18 23 23 Si 1.86793 * 120.00115 * 185.92835 * 21 19 18 24 24 H 1.48501 * 109.47274 * 94.97855 * 23 21 19 25 25 H 1.48500 * 109.46937 * 214.97724 * 23 21 19 26 26 H 1.48498 * 109.47464 * 334.97782 * 23 21 19 27 27 C 1.35790 * 126.09879 * 179.97438 * 15 14 12 28 28 C 1.54242 * 108.52374 * 94.14757 * 7 6 5 29 29 C 1.45535 * 112.40648 * 280.01572 * 28 7 6 30 30 H 1.08992 * 109.47545 * 299.61006 * 1 2 3 31 31 H 1.08998 * 109.46716 * 59.61543 * 1 2 3 32 32 H 1.09002 * 109.46809 * 179.60821 * 1 2 3 33 33 H 1.09006 * 108.87229 * 93.28293 * 4 2 1 34 34 H 1.08997 * 108.79594 * 334.78417 * 4 2 1 35 35 H 1.09002 * 108.81207 * 197.42446 * 5 4 2 36 36 H 1.08992 * 108.72772 * 79.08409 * 5 4 2 37 37 H 1.08997 * 108.87380 * 197.50511 * 6 5 4 38 38 H 1.08998 * 108.79292 * 79.01045 * 6 5 4 39 39 H 0.97001 * 119.99795 * 265.00088 * 9 7 6 40 40 H 0.97000 * 119.99408 * 0.02562 * 14 12 10 41 41 H 1.08008 * 125.81499 * 359.74452 * 16 15 14 42 42 H 0.97003 * 120.00145 * 180.02562 * 22 21 19 43 43 H 1.07998 * 126.25228 * 359.97438 * 27 15 14 44 44 H 1.09004 * 108.88938 * 40.76808 * 28 7 6 45 45 H 1.09001 * 108.89669 * 159.25627 * 28 7 6 46 46 H 1.08999 * 108.89434 * 301.17939 * 29 28 7 47 47 H 1.08999 * 108.89511 * 182.69375 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0355 -0.7169 1.2227 5 6 3.3441 -0.1097 1.7632 6 6 4.3378 0.2600 0.6453 7 6 4.4058 -0.7866 -0.4337 8 1 4.1211 -1.7551 -0.0229 9 7 5.7696 -0.8588 -0.9640 10 6 6.6929 -1.6225 -0.3471 11 8 6.3948 -2.2502 0.6479 12 6 8.0827 -1.6965 -0.8878 13 8 8.3809 -1.0690 -1.8834 14 7 9.0062 -2.4599 -0.2706 15 6 10.3119 -2.5298 -0.7790 16 6 10.7948 -1.8606 -1.9188 17 7 12.0561 -2.1722 -2.0768 18 7 12.4281 -3.0481 -1.0491 19 6 13.6720 -3.6001 -0.8686 20 1 13.8786 -4.1895 0.0125 21 6 14.6659 -3.4004 -1.8198 22 7 14.4534 -2.5904 -2.8308 23 14 16.3035 -4.2845 -1.6595 24 1 16.2745 -5.5305 -2.4669 25 1 17.3925 -3.4021 -2.1499 26 1 16.5454 -4.6239 -0.2342 27 6 11.3352 -3.2553 -0.2590 28 6 3.4314 -0.3911 -1.5621 29 6 2.0524 -0.7363 -1.2505 30 1 -0.3634 0.5077 0.8934 31 1 -0.3633 0.5198 -0.8865 32 1 -0.3633 -1.0277 -0.0070 33 1 2.2096 -1.7632 0.9713 34 1 1.2742 -0.6636 2.0009 35 1 3.8173 -0.8309 2.4297 36 1 3.1044 0.7888 2.3317 37 1 5.3294 0.3823 1.0811 38 1 4.0296 1.2060 0.2002 39 1 6.0081 -0.3569 -1.7590 40 1 8.7678 -2.9615 0.5246 41 1 10.2209 -1.2054 -2.5575 42 1 15.1467 -2.4512 -3.4949 43 1 11.2919 -3.8818 0.6197 44 1 3.4979 0.6847 -1.7248 45 1 3.7254 -0.9036 -2.4781 46 1 1.9874 -1.8110 -1.0802 47 1 1.4227 -0.4771 -2.1016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786009328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:15 Heat of formation + Delta-G solvation = -4.397534 kcal Electronic energy + Delta-G solvation = -28260.181184 eV Core-core repulsion = 24251.255421 eV Total energy + Delta-G solvation = -4008.925763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71816 -39.84188 -39.04794 -37.78608 -35.39421 -34.26253 -33.18367 -32.90166 -31.83327 -30.32488 -28.16409 -27.66467 -25.72905 -24.83617 -23.56652 -23.22119 -21.07277 -20.97649 -20.21763 -19.49181 -19.44782 -18.10480 -17.43546 -16.70270 -15.78213 -15.66428 -15.48692 -15.24964 -15.12334 -14.94850 -14.53247 -14.10829 -13.94020 -13.86593 -13.48843 -13.43847 -13.28955 -13.05619 -12.98554 -12.68880 -12.27517 -11.80199 -11.75173 -11.64306 -11.50898 -11.31332 -11.16048 -11.13469 -10.89929 -10.82516 -10.78944 -10.63603 -10.55054 -10.39673 -10.28236 -9.26364 -9.23194 -9.10408 -8.87483 -8.12954 -6.77982 -6.61347 -4.28140 1.67293 2.60892 2.93098 3.03761 3.08877 3.33591 3.71767 3.75687 3.97894 4.21404 4.24283 4.37122 4.52053 4.61841 4.72269 4.83133 4.86625 4.96860 5.01547 5.03164 5.03803 5.11465 5.26878 5.37710 5.43226 5.54595 5.61498 5.70157 5.70696 5.84523 5.88421 5.89688 5.97645 5.99989 6.10922 6.16318 6.19932 6.32510 6.36264 6.76060 6.89115 6.92471 7.16085 7.25473 7.77286 7.87659 8.11336 8.18416 8.49053 8.69468 9.31258 9.59612 10.34798 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.044248 B = 0.001881 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.637958 B =14885.830371 C =15238.846988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.112 4.112 6 C -0.130 4.130 7 C 0.147 3.853 8 H 0.094 0.906 9 N -0.702 5.702 10 C 0.516 3.484 11 O -0.527 6.527 12 C 0.483 3.517 13 O -0.523 6.523 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.323 4.323 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.076 4.076 28 C -0.125 4.125 29 C -0.111 4.111 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.412 0.588 40 H 0.409 0.591 41 H 0.178 0.822 42 H 0.276 0.724 43 H 0.149 0.851 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.118 4.124 5.405 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.168 4.168 7 C 0.043 3.957 8 H 0.112 0.888 9 N -0.355 5.355 10 C 0.297 3.703 11 O -0.403 6.403 12 C 0.263 3.737 13 O -0.401 6.401 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.393 5.393 23 Si 0.760 3.240 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 C -0.163 4.163 29 C -0.149 4.149 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.248 0.752 40 H 0.244 0.756 41 H 0.194 0.806 42 H 0.086 0.914 43 H 0.167 0.833 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.952 4.380 4.494 22.831 hybrid contribution -0.033 -0.530 0.684 0.866 sum -21.985 3.850 5.179 22.912 Atomic orbital electron populations 1.21881 0.95152 1.01740 1.01546 1.20954 0.95314 1.00093 0.94749 0.90793 1.21472 0.96741 1.00052 0.97304 1.21824 0.94792 1.00938 0.97492 1.21785 1.00169 0.98575 0.96298 1.20794 0.80265 1.00733 0.93957 0.88843 1.45869 1.10255 1.47845 1.31533 1.20276 0.86505 0.79620 0.83884 1.90725 1.80933 1.43796 1.24872 1.19697 0.85681 0.82756 0.85521 1.90652 1.79968 1.44357 1.25124 1.42151 1.08208 1.43768 1.28499 1.17260 0.84208 1.13022 1.03036 1.24144 0.93643 1.04207 0.98224 1.78255 1.11370 1.09943 1.09633 1.44557 1.06411 1.24987 1.14587 1.19931 0.84927 1.31768 1.08888 0.86423 1.25668 1.00485 0.96016 0.94920 1.70212 1.33409 1.26738 1.08986 0.85789 0.79688 0.79144 0.79422 1.19584 1.20057 1.18711 1.21312 0.88123 1.10502 1.02863 1.20746 0.95019 1.02376 0.98161 1.20474 0.95495 1.00802 0.98107 0.92729 0.92783 0.92715 0.91936 0.92074 0.91732 0.92152 0.91452 0.91719 0.75157 0.75607 0.80567 0.91364 0.83346 0.91237 0.91067 0.91806 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 8.88 37.16 0.33 -0.46 16 2 C -0.09 -0.57 2.39 -91.23 -0.22 -0.79 16 3 H 0.07 0.47 6.97 -51.93 -0.36 0.11 16 4 C -0.12 -0.82 4.89 -27.43 -0.13 -0.96 16 5 C -0.11 -0.91 5.85 -25.62 -0.15 -1.06 16 6 C -0.13 -1.18 5.03 -27.43 -0.14 -1.32 16 7 C 0.15 1.41 2.12 -68.54 -0.15 1.26 16 8 H 0.09 1.03 6.45 -51.93 -0.34 0.69 16 9 N -0.70 -8.29 4.97 -54.88 -0.27 -8.56 16 10 C 0.52 7.80 7.70 -11.65 -0.09 7.71 16 11 O -0.53 -8.64 16.15 5.49 0.09 -8.55 16 12 C 0.48 8.75 7.85 -11.65 -0.09 8.66 16 13 O -0.52 -10.58 13.62 5.45 0.07 -10.51 16 14 N -0.58 -11.07 5.45 -10.45 -0.06 -11.13 16 15 C -0.07 -1.61 6.90 -83.93 -0.58 -2.19 16 16 C -0.03 -0.69 10.84 -17.02 -0.18 -0.87 16 17 N -0.26 -7.51 10.41 30.81 0.32 -7.19 16 18 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 19 C -0.32 -8.47 10.24 -14.82 -0.15 -8.62 16 20 H 0.12 2.75 7.84 -52.48 -0.41 2.34 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.18 11.84 55.50 0.66 -20.52 16 23 Si 0.94 18.72 29.56 -169.99 -5.02 13.70 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 C -0.08 -1.81 11.50 -16.38 -0.19 -1.99 16 28 C -0.13 -0.90 4.76 -29.60 -0.14 -1.05 16 29 C -0.11 -0.71 4.69 -29.60 -0.14 -0.85 16 30 H 0.05 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.48 6.64 -51.93 -0.34 0.13 16 34 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.75 7.79 -51.93 -0.40 0.34 16 38 H 0.06 0.51 6.63 -51.93 -0.34 0.17 16 39 H 0.41 4.51 8.07 -40.82 -0.33 4.18 16 40 H 0.41 6.70 8.29 -40.82 -0.34 6.37 16 41 H 0.18 4.45 5.92 -52.48 -0.31 4.13 16 42 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.15 2.94 8.06 -52.49 -0.42 2.51 16 44 H 0.07 0.46 7.47 -51.93 -0.39 0.07 16 45 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 46 H 0.06 0.43 7.47 -51.93 -0.39 0.04 16 47 H 0.07 0.37 7.98 -51.93 -0.41 -0.04 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -31.90 376.52 -7.56 -39.46 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -6.86 Total: 12.88 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.12 Total: -1.42 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.61 Total: -51.23 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.16 Total: -19.06 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.90 -7.56 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786009328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.060 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds