Wall clock time and date at job start Tue Mar 31 2020 19:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.62726 * 2 1 4 4 C 1.50483 * 109.62858 * 120.38357 * 2 1 3 5 5 C 1.54060 * 112.49862 * 214.06197 * 4 2 1 6 6 C 1.54075 * 112.81856 * 318.28016 * 5 4 2 7 7 C 1.50471 * 112.49470 * 318.28597 * 6 5 4 8 8 H 1.08994 * 109.63150 * 334.23955 * 7 6 5 9 9 N 1.46504 * 109.62478 * 213.85914 * 7 6 5 10 10 C 1.34771 * 120.00038 * 85.00468 * 9 7 6 11 11 O 1.21363 * 120.00244 * 359.97438 * 10 9 7 12 12 C 1.49310 * 119.99873 * 179.97438 * 10 9 7 13 13 O 1.21402 * 120.00114 * 359.97438 * 12 10 9 14 14 N 1.34780 * 120.00046 * 179.97438 * 12 10 9 15 15 C 1.40290 * 119.99962 * 179.97438 * 14 12 10 16 16 C 1.40718 * 126.10091 * 359.97438 * 15 14 12 17 17 N 1.30882 * 108.37602 * 180.02562 * 16 15 14 18 18 N 1.40062 * 108.43633 * 359.97438 * 17 16 15 19 19 C 1.37286 * 126.05276 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99876 * 174.09173 * 19 18 17 21 21 C 1.39010 * 120.00616 * 354.09703 * 19 18 17 22 22 N 1.31277 * 119.99387 * 5.92608 * 21 19 18 23 23 Si 1.86793 * 120.00115 * 185.92835 * 21 19 18 24 24 H 1.48501 * 109.47274 * 94.97855 * 23 21 19 25 25 H 1.48500 * 109.46937 * 214.97724 * 23 21 19 26 26 H 1.48498 * 109.47464 * 334.97782 * 23 21 19 27 27 C 1.35790 * 126.09879 * 179.97438 * 15 14 12 28 28 C 1.54242 * 108.52374 * 94.14757 * 7 6 5 29 29 C 1.45535 * 112.40648 * 280.01572 * 28 7 6 30 30 H 1.08992 * 109.47545 * 299.61006 * 1 2 3 31 31 H 1.08998 * 109.46716 * 59.61543 * 1 2 3 32 32 H 1.09002 * 109.46809 * 179.60821 * 1 2 3 33 33 H 1.09006 * 108.87229 * 93.28293 * 4 2 1 34 34 H 1.08997 * 108.79594 * 334.78417 * 4 2 1 35 35 H 1.09002 * 108.81207 * 197.42446 * 5 4 2 36 36 H 1.08992 * 108.72772 * 79.08409 * 5 4 2 37 37 H 1.08997 * 108.87380 * 197.50511 * 6 5 4 38 38 H 1.08998 * 108.79292 * 79.01045 * 6 5 4 39 39 H 0.97001 * 119.99795 * 265.00088 * 9 7 6 40 40 H 0.97000 * 119.99408 * 0.02562 * 14 12 10 41 41 H 1.08008 * 125.81499 * 359.74452 * 16 15 14 42 42 H 0.97003 * 120.00145 * 180.02562 * 22 21 19 43 43 H 1.07998 * 126.25228 * 359.97438 * 27 15 14 44 44 H 1.09004 * 108.88938 * 40.76808 * 28 7 6 45 45 H 1.09001 * 108.89669 * 159.25627 * 28 7 6 46 46 H 1.08999 * 108.89434 * 301.17939 * 29 28 7 47 47 H 1.08999 * 108.89511 * 182.69375 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0355 -0.7169 1.2227 5 6 3.3441 -0.1097 1.7632 6 6 4.3378 0.2600 0.6453 7 6 4.4058 -0.7866 -0.4337 8 1 4.1211 -1.7551 -0.0229 9 7 5.7696 -0.8588 -0.9640 10 6 6.6929 -1.6225 -0.3471 11 8 6.3948 -2.2502 0.6479 12 6 8.0827 -1.6965 -0.8878 13 8 8.3809 -1.0690 -1.8834 14 7 9.0062 -2.4599 -0.2706 15 6 10.3119 -2.5298 -0.7790 16 6 10.7948 -1.8606 -1.9188 17 7 12.0561 -2.1722 -2.0768 18 7 12.4281 -3.0481 -1.0491 19 6 13.6720 -3.6001 -0.8686 20 1 13.8786 -4.1895 0.0125 21 6 14.6659 -3.4004 -1.8198 22 7 14.4534 -2.5904 -2.8308 23 14 16.3035 -4.2845 -1.6595 24 1 16.2745 -5.5305 -2.4669 25 1 17.3925 -3.4021 -2.1499 26 1 16.5454 -4.6239 -0.2342 27 6 11.3352 -3.2553 -0.2590 28 6 3.4314 -0.3911 -1.5621 29 6 2.0524 -0.7363 -1.2505 30 1 -0.3634 0.5077 0.8934 31 1 -0.3633 0.5198 -0.8865 32 1 -0.3633 -1.0277 -0.0070 33 1 2.2096 -1.7632 0.9713 34 1 1.2742 -0.6636 2.0009 35 1 3.8173 -0.8309 2.4297 36 1 3.1044 0.7888 2.3317 37 1 5.3294 0.3823 1.0811 38 1 4.0296 1.2060 0.2002 39 1 6.0081 -0.3569 -1.7590 40 1 8.7678 -2.9615 0.5246 41 1 10.2209 -1.2054 -2.5575 42 1 15.1467 -2.4512 -3.4949 43 1 11.2919 -3.8818 0.6197 44 1 3.4979 0.6847 -1.7248 45 1 3.7254 -0.9036 -2.4781 46 1 1.9874 -1.8110 -1.0802 47 1 1.4227 -0.4771 -2.1016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786009328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:14 Heat of formation + Delta-G solvation = -25.488138 kcal Electronic energy + Delta-G solvation = -28261.095742 eV Core-core repulsion = 24251.255421 eV Total energy + Delta-G solvation = -4009.840321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08814 -41.35967 -40.20912 -39.11360 -36.51016 -35.78858 -34.96568 -33.53711 -32.64643 -32.29715 -29.91806 -28.41542 -27.22987 -26.14336 -24.57282 -23.98558 -22.90961 -21.77985 -21.63370 -21.18188 -20.13455 -19.56348 -19.10831 -17.84506 -17.45837 -16.99406 -16.80178 -16.74988 -16.07057 -15.77320 -15.58962 -15.42864 -15.31704 -14.95071 -14.87781 -14.75305 -14.36036 -14.06456 -13.86046 -13.52869 -13.39157 -13.37850 -13.01917 -12.90029 -12.87254 -12.55797 -12.33908 -12.06983 -12.05758 -11.97462 -11.81330 -11.46031 -11.37284 -11.19876 -11.08205 -10.99420 -10.87610 -10.56080 -10.26339 -10.14661 -8.63113 -8.50106 -6.27421 0.28717 1.28890 1.30464 1.42140 1.58970 1.72058 2.04000 2.11629 2.52948 2.58200 2.93630 3.06054 3.52073 3.56481 3.66627 3.97603 4.14767 4.20007 4.21480 4.37461 4.38905 4.43475 4.47183 4.51949 4.72018 4.78108 4.89430 4.95046 4.96548 4.97964 5.05299 5.12127 5.15889 5.20885 5.24229 5.26640 5.29872 5.31479 5.35028 5.42474 5.47788 5.49482 5.65476 5.90082 6.02517 6.25061 6.49080 6.66861 6.82097 7.06815 7.40737 7.61961 8.49505 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.044248 B = 0.001881 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.637958 B =14885.830371 C =15238.846988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.127 4.127 7 C 0.144 3.856 8 H 0.082 0.918 9 N -0.685 5.685 10 C 0.525 3.475 11 O -0.540 6.540 12 C 0.485 3.515 13 O -0.543 6.543 14 N -0.583 5.583 15 C -0.057 4.057 16 C -0.048 4.048 17 N -0.309 5.309 18 N -0.163 5.163 19 C -0.354 4.354 20 H 0.142 0.858 21 C -0.004 4.004 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.243 1.243 27 C -0.074 4.074 28 C -0.118 4.118 29 C -0.110 4.110 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.418 0.582 40 H 0.423 0.577 41 H 0.176 0.824 42 H 0.278 0.722 43 H 0.188 0.812 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.547 3.787 6.446 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.166 4.166 7 C 0.041 3.959 8 H 0.100 0.900 9 N -0.337 5.337 10 C 0.305 3.695 11 O -0.417 6.417 12 C 0.267 3.733 13 O -0.421 6.421 14 N -0.228 5.228 15 C -0.163 4.163 16 C -0.223 4.223 17 N -0.140 5.140 18 N 0.069 4.931 19 C -0.486 4.486 20 H 0.159 0.841 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.166 1.166 27 C -0.225 4.225 28 C -0.156 4.156 29 C -0.148 4.148 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.255 0.745 40 H 0.260 0.740 41 H 0.193 0.807 42 H 0.088 0.912 43 H 0.205 0.795 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.445 4.056 5.555 24.433 hybrid contribution 0.202 -0.357 0.392 0.567 sum -23.243 3.699 5.947 24.276 Atomic orbital electron populations 1.21863 0.94390 1.01866 1.02029 1.20936 0.95922 0.99946 0.94045 0.90526 1.21454 0.96248 0.99546 0.98019 1.21802 0.94997 1.01051 0.96970 1.21764 0.99358 0.99124 0.96331 1.21011 0.79177 1.00512 0.95189 0.90038 1.45910 1.10552 1.46256 1.31032 1.19650 0.85495 0.80449 0.83930 1.90731 1.80745 1.44780 1.25442 1.20335 0.86764 0.81414 0.84803 1.90642 1.80663 1.44818 1.26014 1.42094 1.06868 1.44601 1.29195 1.17304 0.85839 1.11430 1.01771 1.24248 0.93458 1.05057 0.99556 1.78151 1.12749 1.11580 1.11528 1.44836 1.07630 1.25589 1.15054 1.20663 0.85193 1.32447 1.10249 0.84113 1.26888 1.04553 0.96242 0.93980 1.70377 1.35085 1.28973 1.10371 0.84567 0.73851 0.77411 0.80328 1.19154 1.20022 1.16627 1.22004 0.87195 1.10118 1.03189 1.20723 0.94722 1.03167 0.96976 1.20471 0.95008 1.00572 0.98751 0.92424 0.92173 0.92781 0.92773 0.91334 0.93338 0.91098 0.93628 0.90044 0.74461 0.73955 0.80731 0.91209 0.79518 0.89952 0.90949 0.92305 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.88 71.98 0.64 -0.57 16 2 C -0.09 -0.90 2.39 -11.19 -0.03 -0.93 16 3 H 0.08 0.76 6.97 -2.38 -0.02 0.74 16 4 C -0.12 -1.42 4.89 30.14 0.15 -1.27 16 5 C -0.11 -1.65 5.85 31.32 0.18 -1.46 16 6 C -0.13 -2.14 5.03 30.14 0.15 -1.99 16 7 C 0.14 2.57 2.12 44.59 0.09 2.66 16 8 H 0.08 1.71 6.45 -2.39 -0.02 1.69 16 9 N -0.69 -15.41 4.97 -445.91 -2.22 -17.63 16 10 C 0.52 15.43 7.70 87.23 0.67 16.10 16 11 O -0.54 -17.21 16.15 -3.29 -0.05 -17.26 16 12 C 0.49 17.40 7.85 87.23 0.69 18.09 16 13 O -0.54 -22.05 13.62 -3.41 -0.05 -22.09 16 14 N -0.58 -21.75 5.45 -305.33 -1.66 -23.42 16 15 C -0.06 -2.65 6.90 37.82 0.26 -2.39 16 16 C -0.05 -2.55 10.84 85.44 0.93 -1.63 16 17 N -0.31 -18.36 10.41 -56.43 -0.59 -18.95 16 18 N -0.16 -9.02 3.73 -189.98 -0.71 -9.72 16 19 C -0.35 -18.65 10.24 84.02 0.86 -17.79 16 20 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 21 C 0.00 -0.23 5.50 84.96 0.47 0.24 16 22 N -0.82 -46.75 11.84 21.66 0.26 -46.49 16 23 Si 1.02 38.19 29.56 68.60 2.03 40.22 16 24 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.24 -8.24 7.11 99.48 0.71 -7.53 16 27 C -0.07 -3.47 11.50 83.41 0.96 -2.51 16 28 C -0.12 -1.45 4.76 28.74 0.14 -1.31 16 29 C -0.11 -1.15 4.69 28.73 0.13 -1.02 16 30 H 0.06 0.46 8.09 -2.39 -0.02 0.44 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.76 6.64 -2.38 -0.02 0.75 16 34 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.04 0.98 7.79 -2.39 -0.02 0.96 16 38 H 0.08 1.10 6.63 -2.39 -0.02 1.08 16 39 H 0.42 8.61 8.07 -92.71 -0.75 7.86 16 40 H 0.42 13.34 8.29 -92.71 -0.77 12.57 16 41 H 0.18 9.16 5.92 -2.91 -0.02 9.14 16 42 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.19 6.99 8.06 -2.91 -0.02 6.97 16 44 H 0.08 0.83 7.47 -2.39 -0.02 0.82 16 45 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 46 H 0.06 0.69 7.47 -2.39 -0.02 0.67 16 47 H 0.08 0.67 7.98 -2.39 -0.02 0.65 16 Total: -1.00 -71.19 376.52 2.80 -68.40 By element: Atomic # 1 Polarization: 43.24 SS G_CDS: -0.50 Total: 42.74 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 6.29 Total: 4.22 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -4.92 Total: -116.21 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.10 Total: -39.36 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -71.19 2.80 -68.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786009328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.909 kcal (2) G-P(sol) polarization free energy of solvation -71.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds