Wall clock time and date at job start Tue Mar 31 2020 18:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 O 1.42908 * 109.47384 * 119.99878 * 2 1 3 5 5 C 1.35484 * 116.99859 * 150.00110 * 4 2 1 6 6 C 1.39628 * 119.96935 * 179.72589 * 5 4 2 7 7 N 1.31541 * 120.03607 * 179.75330 * 6 5 4 8 8 C 1.33208 * 119.98669 * 0.52240 * 7 6 5 9 9 C 1.47906 * 120.02529 * 179.70879 * 8 7 6 10 10 O 1.21550 * 119.99976 * 158.92832 * 9 8 7 11 11 N 1.34767 * 119.99834 * 338.93304 * 9 8 7 12 12 C 1.46930 * 120.63318 * 0.04017 * 11 9 8 13 13 C 1.52758 * 109.00940 * 233.58799 * 12 11 9 14 14 C 1.53036 * 109.38591 * 305.58487 * 13 12 11 15 15 C 1.53047 * 109.53549 * 61.24425 * 14 13 12 16 16 H 1.08994 * 109.49528 * 58.58364 * 15 14 13 17 17 N 1.46497 * 109.52122 * 178.67069 * 15 14 13 18 18 C 1.36945 * 119.99737 * 204.85319 * 17 15 14 19 19 H 1.08001 * 119.99720 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00231 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00213 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99695 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47424 * 90.00509 * 22 20 18 24 24 H 1.48508 * 109.47188 * 209.99887 * 22 20 18 25 25 H 1.48501 * 109.47675 * 330.00054 * 22 20 18 26 26 C 1.46928 * 120.63366 * 180.32845 * 11 9 8 27 27 C 1.39395 * 119.95335 * 359.73043 * 8 7 6 28 28 N 1.32081 * 119.96038 * 0.02562 * 27 8 7 29 29 H 1.09000 * 109.47402 * 60.00047 * 1 2 3 30 30 H 1.08998 * 109.46881 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47519 * 299.99385 * 1 2 3 32 32 H 1.08995 * 109.47700 * 240.00227 * 2 1 3 33 33 H 1.09008 * 109.46816 * 59.99888 * 3 2 1 34 34 H 1.08998 * 109.47143 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46927 * 300.00243 * 3 2 1 36 36 H 1.07998 * 119.98867 * 0.02562 * 6 5 4 37 37 H 1.08997 * 109.58377 * 353.42265 * 12 11 9 38 38 H 1.08997 * 109.58699 * 113.84385 * 12 11 9 39 39 H 1.09001 * 109.56519 * 185.54976 * 13 12 11 40 40 H 1.09004 * 109.38947 * 65.51526 * 13 12 11 41 41 H 1.08997 * 109.46446 * 301.22245 * 14 13 12 42 42 H 1.09002 * 109.46510 * 181.26121 * 14 13 12 43 43 H 0.97000 * 120.00762 * 24.84806 * 17 15 14 44 44 H 0.97003 * 120.00244 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.58392 * 246.15497 * 26 11 9 46 46 H 1.09008 * 109.58297 * 6.57324 * 26 11 9 47 47 H 1.08000 * 120.02230 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1971 -1.3120 1.0654 6 6 3.7237 -1.9854 2.1694 7 7 4.8774 -2.6097 2.0710 8 6 5.5486 -2.5908 0.9205 9 6 6.8489 -3.2871 0.8108 10 8 7.2776 -3.6055 -0.2811 11 7 7.5583 -3.5687 1.9216 12 6 7.0528 -3.1911 3.2485 13 6 8.1216 -2.3766 3.9749 14 6 9.4314 -3.1677 4.0027 15 6 9.9062 -3.4221 2.5702 16 1 10.0445 -2.4698 2.0583 17 7 11.1762 -4.1517 2.5976 18 6 12.0414 -4.0602 1.5400 19 1 11.7871 -3.4505 0.6856 20 6 13.2446 -4.7520 1.5657 21 7 14.0759 -4.6644 0.5491 22 14 13.6839 -5.8070 3.0433 23 1 13.1801 -7.1881 2.8328 24 1 15.1594 -5.8383 3.2081 25 1 13.0616 -5.2337 4.2637 26 6 8.8549 -4.2534 1.8283 27 6 5.0248 -1.9140 -0.1798 28 7 3.8640 -1.2919 -0.0802 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8901 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 3.1816 -1.9974 3.1034 37 1 6.1499 -2.5905 3.1382 38 1 6.8284 -4.0896 3.8233 39 1 7.7964 -2.1755 4.9956 40 1 8.2770 -1.4339 3.4502 41 1 9.2695 -4.1207 4.5063 42 1 10.1889 -2.5973 4.5403 43 1 11.4044 -4.6995 3.3649 44 1 14.9168 -5.1475 0.5672 45 1 8.7805 -5.2404 2.2849 46 1 9.1406 -4.3536 0.7811 47 1 5.5679 -1.8984 -1.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999160992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:55 Heat of formation + Delta-G solvation = 7.571265 kcal Electronic energy + Delta-G solvation = -28794.859387 eV Core-core repulsion = 24786.452629 eV Total energy + Delta-G solvation = -4008.406757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87688 -40.02285 -38.93062 -37.36959 -35.06661 -34.24814 -33.82973 -32.30005 -31.35305 -30.99941 -28.73036 -27.77328 -26.13839 -25.35838 -24.29112 -23.67661 -22.03014 -21.63478 -20.82588 -19.47378 -19.06520 -18.28946 -17.52713 -17.12208 -16.57476 -16.05245 -15.44008 -15.28885 -15.21873 -14.90561 -14.52642 -14.46329 -14.20259 -13.89370 -13.73522 -13.44999 -13.08173 -13.00801 -12.85414 -12.79536 -12.62656 -12.53030 -12.38934 -12.20840 -11.84288 -11.42097 -11.31118 -11.22756 -11.05479 -10.89524 -10.67551 -10.43601 -10.25446 -10.22511 -9.87920 -9.58438 -9.24773 -9.12753 -9.06902 -8.36969 -7.28728 -5.76273 -3.13601 0.20131 0.59056 2.32461 2.63782 3.02114 3.37722 3.40269 3.41595 3.45806 3.58642 3.77162 4.04321 4.34884 4.44374 4.50983 4.58892 4.72276 4.78856 4.96779 5.05868 5.07248 5.18165 5.18607 5.24676 5.29720 5.31231 5.44528 5.52038 5.55810 5.63759 5.70579 5.73903 5.83089 5.96293 6.01417 6.11296 6.17646 6.30430 6.41638 6.57310 6.67602 6.70272 6.73739 6.91910 7.20178 7.58685 7.99502 8.22748 8.42477 9.19628 9.91336 10.09988 11.41665 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027989 B = 0.002317 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.153353 B =12080.447523 C =12560.596003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 C -0.170 4.170 4 O -0.290 6.290 5 C 0.296 3.704 6 C 0.035 3.965 7 N -0.367 5.367 8 C -0.010 4.010 9 C 0.572 3.428 10 O -0.530 6.530 11 N -0.583 5.583 12 C 0.079 3.921 13 C -0.131 4.131 14 C -0.130 4.130 15 C 0.174 3.826 16 H 0.059 0.941 17 N -0.742 5.742 18 C -0.248 4.248 19 H 0.092 0.908 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.090 3.910 27 C 0.158 3.842 28 N -0.500 5.500 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.183 0.817 37 H 0.130 0.870 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.363 0.637 44 H 0.260 0.740 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.216 10.258 4.745 31.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.227 4.227 4 O -0.195 6.195 5 C 0.112 3.888 6 C -0.130 4.130 7 N -0.085 5.085 8 C -0.148 4.148 9 C 0.357 3.643 10 O -0.407 6.407 11 N -0.314 5.314 12 C -0.044 4.044 13 C -0.170 4.170 14 C -0.169 4.169 15 C 0.063 3.937 16 H 0.077 0.923 17 N -0.384 5.384 18 C -0.377 4.377 19 H 0.110 0.890 20 C -0.190 4.190 21 N -0.578 5.578 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.034 4.034 27 C 0.000 4.000 28 N -0.229 5.229 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.200 0.800 37 H 0.146 0.854 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.196 0.804 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -29.000 10.167 4.118 31.005 hybrid contribution 0.511 -0.771 0.905 1.294 sum -28.489 9.397 5.023 30.416 Atomic orbital electron populations 1.21915 0.92357 1.03228 1.03283 1.22515 0.94855 0.92968 0.87580 1.22233 1.02258 0.95259 1.02975 1.86305 1.30583 1.63469 1.39157 1.21253 0.86736 0.89623 0.91181 1.23139 0.93372 0.97542 0.98973 1.68485 1.04169 1.13222 1.22616 1.22119 0.98259 1.02980 0.91446 1.17502 0.82698 0.79420 0.84718 1.90843 1.69829 1.53619 1.26371 1.48087 1.20809 1.56473 1.06041 1.22652 0.98813 1.00405 0.82516 1.21840 0.95656 0.99167 1.00320 1.21882 0.96583 1.00137 0.98259 1.20451 0.85296 0.94823 0.93144 0.92279 1.42730 1.17374 1.57199 1.21113 1.19103 0.97067 1.24992 0.96570 0.89031 1.24685 0.96839 1.00094 0.97339 1.69706 1.11100 1.46403 1.30574 0.86557 0.77578 0.81069 0.83348 1.21030 1.21728 1.20302 1.22798 0.80504 0.95633 1.04428 1.23532 0.89142 0.88021 0.99354 1.68196 1.08962 1.21525 1.24225 0.90197 0.91665 0.91421 0.88985 0.91738 0.91889 0.90718 0.79969 0.85370 0.91579 0.91000 0.91888 0.92149 0.91491 0.80444 0.93017 0.91804 0.88510 0.79633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.56 37.15 0.36 -0.35 16 2 C 0.08 0.52 3.11 -26.73 -0.08 0.44 16 3 C -0.17 -1.04 9.53 37.16 0.35 -0.68 16 4 O -0.29 -2.42 9.77 -18.14 -0.18 -2.60 16 5 C 0.30 2.80 7.47 -16.71 -0.12 2.67 16 6 C 0.04 0.31 11.18 -17.16 -0.19 0.12 16 7 N -0.37 -4.00 6.50 -9.49 -0.06 -4.06 16 8 C -0.01 -0.12 6.46 -82.88 -0.54 -0.66 16 9 C 0.57 9.27 7.62 -12.31 -0.09 9.17 16 10 O -0.53 -10.33 15.94 5.32 0.08 -10.25 16 11 N -0.58 -9.18 2.98 -174.12 -0.52 -9.70 16 12 C 0.08 0.98 5.97 -3.93 -0.02 0.96 16 13 C -0.13 -1.60 6.06 -26.84 -0.16 -1.76 16 14 C -0.13 -1.98 5.36 -26.69 -0.14 -2.12 16 15 C 0.17 3.36 2.92 -67.81 -0.20 3.16 16 16 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 17 N -0.74 -17.45 4.93 -53.31 -0.26 -17.71 16 18 C -0.25 -7.01 10.41 -15.06 -0.16 -7.17 16 19 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.45 13.97 55.49 0.78 -28.67 16 22 Si 0.88 22.07 27.73 -169.99 -4.71 17.35 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 26 C 0.09 1.69 6.02 -3.71 -0.02 1.66 16 27 C 0.16 1.82 10.76 -17.01 -0.18 1.63 16 28 N -0.50 -5.26 8.80 -12.76 -0.11 -5.37 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.70 6.99 -51.93 -0.36 0.34 16 33 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.13 1.46 3.96 -79.94 -0.32 1.14 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.36 8.30 5.66 -40.82 -0.23 8.06 16 44 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.10 2.12 7.00 -51.92 -0.36 1.75 16 47 H 0.19 1.98 7.78 -52.49 -0.41 1.57 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -33.57 380.89 -7.74 -41.31 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.19 Total: 6.79 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.30 Total: 7.16 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -0.18 Total: -65.51 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.09 Total: -12.85 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.57 -7.74 -41.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999160992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.885 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds