Wall clock time and date at job start Tue Mar 31 2020 18:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 O 1.42908 * 109.47384 * 119.99878 * 2 1 3 5 5 C 1.35484 * 116.99859 * 150.00110 * 4 2 1 6 6 C 1.39628 * 119.96935 * 179.72589 * 5 4 2 7 7 N 1.31541 * 120.03607 * 179.75330 * 6 5 4 8 8 C 1.33208 * 119.98669 * 0.52240 * 7 6 5 9 9 C 1.47906 * 120.02529 * 179.70879 * 8 7 6 10 10 O 1.21550 * 119.99976 * 158.92832 * 9 8 7 11 11 N 1.34767 * 119.99834 * 338.93304 * 9 8 7 12 12 C 1.46930 * 120.63318 * 0.04017 * 11 9 8 13 13 C 1.52758 * 109.00940 * 233.58799 * 12 11 9 14 14 C 1.53036 * 109.38591 * 305.58487 * 13 12 11 15 15 C 1.53047 * 109.53549 * 61.24425 * 14 13 12 16 16 H 1.08994 * 109.49528 * 58.58364 * 15 14 13 17 17 N 1.46497 * 109.52122 * 178.67069 * 15 14 13 18 18 C 1.36945 * 119.99737 * 204.85319 * 17 15 14 19 19 H 1.08001 * 119.99720 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00231 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00213 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99695 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47424 * 90.00509 * 22 20 18 24 24 H 1.48508 * 109.47188 * 209.99887 * 22 20 18 25 25 H 1.48501 * 109.47675 * 330.00054 * 22 20 18 26 26 C 1.46928 * 120.63366 * 180.32845 * 11 9 8 27 27 C 1.39395 * 119.95335 * 359.73043 * 8 7 6 28 28 N 1.32081 * 119.96038 * 0.02562 * 27 8 7 29 29 H 1.09000 * 109.47402 * 60.00047 * 1 2 3 30 30 H 1.08998 * 109.46881 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47519 * 299.99385 * 1 2 3 32 32 H 1.08995 * 109.47700 * 240.00227 * 2 1 3 33 33 H 1.09008 * 109.46816 * 59.99888 * 3 2 1 34 34 H 1.08998 * 109.47143 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46927 * 300.00243 * 3 2 1 36 36 H 1.07998 * 119.98867 * 0.02562 * 6 5 4 37 37 H 1.08997 * 109.58377 * 353.42265 * 12 11 9 38 38 H 1.08997 * 109.58699 * 113.84385 * 12 11 9 39 39 H 1.09001 * 109.56519 * 185.54976 * 13 12 11 40 40 H 1.09004 * 109.38947 * 65.51526 * 13 12 11 41 41 H 1.08997 * 109.46446 * 301.22245 * 14 13 12 42 42 H 1.09002 * 109.46510 * 181.26121 * 14 13 12 43 43 H 0.97000 * 120.00762 * 24.84806 * 17 15 14 44 44 H 0.97003 * 120.00244 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.58392 * 246.15497 * 26 11 9 46 46 H 1.09008 * 109.58297 * 6.57324 * 26 11 9 47 47 H 1.08000 * 120.02230 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1971 -1.3120 1.0654 6 6 3.7237 -1.9854 2.1694 7 7 4.8774 -2.6097 2.0710 8 6 5.5486 -2.5908 0.9205 9 6 6.8489 -3.2871 0.8108 10 8 7.2776 -3.6055 -0.2811 11 7 7.5583 -3.5687 1.9216 12 6 7.0528 -3.1911 3.2485 13 6 8.1216 -2.3766 3.9749 14 6 9.4314 -3.1677 4.0027 15 6 9.9062 -3.4221 2.5702 16 1 10.0445 -2.4698 2.0583 17 7 11.1762 -4.1517 2.5976 18 6 12.0414 -4.0602 1.5400 19 1 11.7871 -3.4505 0.6856 20 6 13.2446 -4.7520 1.5657 21 7 14.0759 -4.6644 0.5491 22 14 13.6839 -5.8070 3.0433 23 1 13.1801 -7.1881 2.8328 24 1 15.1594 -5.8383 3.2081 25 1 13.0616 -5.2337 4.2637 26 6 8.8549 -4.2534 1.8283 27 6 5.0248 -1.9140 -0.1798 28 7 3.8640 -1.2919 -0.0802 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8901 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 3.1816 -1.9974 3.1034 37 1 6.1499 -2.5905 3.1382 38 1 6.8284 -4.0896 3.8233 39 1 7.7964 -2.1755 4.9956 40 1 8.2770 -1.4339 3.4502 41 1 9.2695 -4.1207 4.5063 42 1 10.1889 -2.5973 4.5403 43 1 11.4044 -4.6995 3.3649 44 1 14.9168 -5.1475 0.5672 45 1 8.7805 -5.2404 2.2849 46 1 9.1406 -4.3536 0.7811 47 1 5.5679 -1.8984 -1.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999160992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:54 Heat of formation + Delta-G solvation = -17.115169 kcal Electronic energy + Delta-G solvation = -28795.929871 eV Core-core repulsion = 24786.452629 eV Total energy + Delta-G solvation = -4009.477241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.73923 -41.12589 -39.78627 -38.75768 -36.47814 -35.44743 -34.40875 -33.93284 -32.94859 -31.97799 -30.35563 -28.20131 -27.22572 -26.26241 -25.64512 -25.15222 -23.13923 -22.63956 -22.13534 -20.81503 -19.76185 -19.55918 -19.17268 -18.23172 -17.48778 -17.14380 -16.70880 -16.43650 -16.11241 -16.07418 -15.70815 -15.62141 -15.43403 -15.08406 -14.96813 -14.65763 -14.30755 -14.20763 -14.04064 -13.86206 -13.57910 -13.42577 -13.25240 -13.02818 -12.99400 -12.79904 -12.56796 -12.52590 -12.07571 -11.93562 -11.90103 -11.83697 -11.82576 -11.51886 -11.39693 -11.32921 -11.11370 -10.15776 -10.02739 -9.77667 -9.26662 -8.04092 -5.40418 -0.69570 -0.20983 1.37136 1.42269 1.49391 1.52534 1.60308 1.86384 2.47509 2.48173 2.78401 2.84060 3.24726 3.26423 3.49397 3.57015 3.83917 3.93520 3.96500 4.01545 4.08517 4.19722 4.22351 4.32776 4.36081 4.44345 4.51327 4.69937 4.71812 4.74263 4.81150 4.85583 4.86591 4.97637 5.02951 5.11249 5.18637 5.21967 5.25369 5.34965 5.43713 5.55188 5.74754 5.85263 5.88526 6.19257 6.27971 6.44997 6.96468 7.04840 7.77099 7.99490 9.17468 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027989 B = 0.002317 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.153353 B =12080.447523 C =12560.596003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.167 4.167 4 O -0.286 6.286 5 C 0.301 3.699 6 C 0.054 3.946 7 N -0.369 5.369 8 C -0.027 4.027 9 C 0.567 3.433 10 O -0.578 6.578 11 N -0.584 5.584 12 C 0.076 3.924 13 C -0.123 4.123 14 C -0.121 4.121 15 C 0.170 3.830 16 H 0.031 0.969 17 N -0.743 5.743 18 C -0.237 4.237 19 H 0.046 0.954 20 C -0.065 4.065 21 N -0.984 5.984 22 Si 0.962 3.038 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.244 1.244 26 C 0.103 3.897 27 C 0.157 3.843 28 N -0.507 5.507 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.224 0.776 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.371 0.629 44 H 0.259 0.741 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.558 10.682 8.545 35.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.224 4.224 4 O -0.191 6.191 5 C 0.116 3.884 6 C -0.113 4.113 7 N -0.086 5.086 8 C -0.163 4.163 9 C 0.354 3.646 10 O -0.458 6.458 11 N -0.314 5.314 12 C -0.045 4.045 13 C -0.161 4.161 14 C -0.160 4.160 15 C 0.061 3.939 16 H 0.049 0.951 17 N -0.386 5.386 18 C -0.368 4.368 19 H 0.064 0.936 20 C -0.257 4.257 21 N -0.634 5.634 22 Si 0.788 3.212 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.168 1.168 26 C -0.023 4.023 27 C -0.001 4.001 28 N -0.236 5.236 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.241 0.759 37 H 0.163 0.837 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.205 0.795 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -32.402 10.619 7.957 35.014 hybrid contribution 1.320 -0.751 -0.362 1.561 sum -31.081 9.869 7.595 33.483 Atomic orbital electron populations 1.21923 0.90426 1.03525 1.04425 1.22742 0.96302 0.92983 0.86585 1.22218 1.01027 0.95039 1.04115 1.86327 1.29722 1.63087 1.39916 1.21550 0.86826 0.88988 0.91041 1.23763 0.92243 0.95339 0.99969 1.68350 1.05030 1.13673 1.21594 1.21488 0.97295 1.04554 0.92925 1.18014 0.83775 0.78846 0.84012 1.90808 1.71332 1.55539 1.28138 1.48148 1.19526 1.56092 1.07659 1.22966 0.99383 1.01509 0.80595 1.21843 0.93770 0.98024 1.02505 1.21814 0.98122 1.01617 0.94422 1.20614 0.83902 0.92994 0.96376 0.95063 1.42644 1.18189 1.57864 1.19896 1.18964 0.97853 1.23447 0.96531 0.93569 1.25616 0.96763 1.02203 1.01090 1.69913 1.11783 1.48215 1.33478 0.85312 0.76920 0.78866 0.80054 1.20403 1.22197 1.16807 1.22314 0.82237 0.96257 1.01461 1.23434 0.89500 0.88148 0.99027 1.68223 1.08588 1.21676 1.25120 0.88595 0.91793 0.90758 0.90083 0.91010 0.93719 0.89230 0.75920 0.83745 0.89847 0.86950 0.92735 0.90438 0.91318 0.79525 0.93257 0.90982 0.93113 0.80023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.56 71.98 0.69 -0.29 16 2 C 0.07 0.80 3.11 30.59 0.10 0.90 16 3 C -0.17 -1.72 9.53 71.98 0.69 -1.03 16 4 O -0.29 -3.99 9.77 -87.84 -0.86 -4.85 16 5 C 0.30 4.98 7.47 84.92 0.63 5.62 16 6 C 0.05 0.76 11.18 85.07 0.95 1.71 16 7 N -0.37 -7.14 6.50 -183.92 -1.20 -8.34 16 8 C -0.03 -0.67 6.46 41.78 0.27 -0.40 16 9 C 0.57 19.10 7.62 86.81 0.66 19.76 16 10 O -0.58 -24.39 15.94 -3.87 -0.06 -24.45 16 11 N -0.58 -18.47 2.98 -823.07 -2.45 -20.92 16 12 C 0.08 1.69 5.97 86.22 0.51 2.21 16 13 C -0.12 -2.60 6.06 30.53 0.19 -2.42 16 14 C -0.12 -3.39 5.36 30.62 0.16 -3.23 16 15 C 0.17 6.70 2.92 45.07 0.13 6.83 16 16 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 17 N -0.74 -35.24 4.93 -322.57 -1.59 -36.83 16 18 C -0.24 -14.04 10.41 84.03 0.87 -13.17 16 19 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 21 N -0.98 -64.99 13.97 21.65 0.30 -64.69 16 22 Si 0.96 45.83 27.73 68.60 1.90 47.73 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.24 -10.20 6.52 99.48 0.65 -9.55 16 26 C 0.10 3.96 6.02 86.36 0.52 4.48 16 27 C 0.16 3.65 10.76 84.93 0.91 4.57 16 28 N -0.51 -10.24 8.80 -307.09 -2.70 -12.94 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 1.14 6.99 -2.39 -0.02 1.12 16 33 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.15 2.81 3.96 -57.70 -0.23 2.58 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.37 16.34 5.66 -92.71 -0.52 15.81 16 44 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 45 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 46 H 0.05 2.41 7.00 -2.38 -0.02 2.40 16 47 H 0.18 4.22 7.78 -2.91 -0.02 4.20 16 Total: -1.00 -78.74 380.89 1.29 -77.45 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.18 Total: 25.78 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 7.76 Total: 22.04 kcal Atomic # 7 Polarization: -136.08 SS G_CDS: -7.64 Total: -143.72 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.92 Total: -29.30 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.73 kcal Total: -78.74 1.29 -77.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999160992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.337 kcal (2) G-P(sol) polarization free energy of solvation -78.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds