Wall clock time and date at job start Tue Mar 31 2020 18:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46730 * 2 1 4 4 O 1.42902 * 109.47194 * 119.99518 * 2 1 3 5 5 C 1.35475 * 116.99720 * 150.00010 * 4 2 1 6 6 C 1.39640 * 119.97529 * 179.97438 * 5 4 2 7 7 N 1.31530 * 120.03786 * 179.72167 * 6 5 4 8 8 C 1.33204 * 119.99213 * 0.55244 * 7 6 5 9 9 C 1.47901 * 120.02671 * 179.74236 * 8 7 6 10 10 O 1.21549 * 120.00074 * 202.53635 * 9 8 7 11 11 N 1.34779 * 120.00020 * 22.53415 * 9 8 7 12 12 C 1.46929 * 120.62840 * 359.55089 * 11 9 8 13 13 C 1.53194 * 108.77338 * 126.36741 * 12 11 9 14 14 C 1.53038 * 109.31616 * 54.63325 * 13 12 11 15 15 C 1.53035 * 109.53733 * 298.63564 * 14 13 12 16 16 H 1.09003 * 109.49834 * 301.38023 * 15 14 13 17 17 N 1.46499 * 109.49830 * 181.31434 * 15 14 13 18 18 C 1.36938 * 120.00405 * 154.99711 * 17 15 14 19 19 H 1.08004 * 119.99739 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00635 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99708 * 359.72379 * 20 18 17 22 22 Si 1.86797 * 120.00205 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47243 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47097 * 120.00037 * 22 20 18 25 25 H 1.48501 * 109.47080 * 239.99883 * 22 20 18 26 26 C 1.46928 * 120.63291 * 179.52124 * 11 9 8 27 27 C 1.39391 * 119.94911 * 359.47238 * 8 7 6 28 28 N 1.32079 * 119.96442 * 0.24686 * 27 8 7 29 29 H 1.08996 * 109.47460 * 300.00277 * 1 2 3 30 30 H 1.09006 * 109.46955 * 60.00396 * 1 2 3 31 31 H 1.08995 * 109.46743 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47087 * 239.99971 * 2 1 3 33 33 H 1.08999 * 109.47058 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47326 * 299.99774 * 3 2 1 35 35 H 1.08996 * 109.47375 * 59.99671 * 3 2 1 36 36 H 1.08001 * 119.97874 * 0.02562 * 6 5 4 37 37 H 1.08996 * 109.58499 * 6.58182 * 12 11 9 38 38 H 1.09000 * 109.58160 * 246.15324 * 12 11 9 39 39 H 1.09002 * 109.49386 * 294.67854 * 13 12 11 40 40 H 1.08997 * 109.52085 * 174.60453 * 13 12 11 41 41 H 1.08997 * 109.46017 * 178.61049 * 14 13 12 42 42 H 1.09007 * 109.44323 * 58.64535 * 14 13 12 43 43 H 0.97001 * 120.00278 * 334.99651 * 17 15 14 44 44 H 0.97002 * 120.00112 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.58370 * 113.84464 * 26 11 9 46 46 H 1.09005 * 109.58163 * 353.42596 * 26 11 9 47 47 H 1.08000 * 120.01961 * 180.27034 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 3.1970 -1.3119 1.0655 6 6 3.7214 -1.9897 2.1680 7 7 4.8746 -2.6145 2.0693 8 6 5.5482 -2.5916 0.9204 9 6 6.8477 -3.2891 0.8103 10 8 7.6460 -2.9558 -0.0436 11 7 7.1468 -4.2943 1.6568 12 6 6.1963 -4.7020 2.7004 13 6 5.9461 -6.2085 2.5782 14 6 7.2846 -6.9491 2.6230 15 6 8.1541 -6.5067 1.4439 16 1 7.6329 -6.7145 0.5094 17 7 9.4225 -7.2392 1.4698 18 6 10.1316 -7.4217 0.3126 19 1 9.7559 -7.0253 -0.6191 20 6 11.3332 -8.1162 0.3370 21 7 11.7938 -8.5947 1.4734 22 14 12.3008 -8.3645 -1.2415 23 1 11.5761 -7.7295 -2.3714 24 1 13.6428 -7.7441 -1.1023 25 1 12.4524 -9.8180 -1.5057 26 6 8.4293 -5.0037 1.5532 27 6 5.0246 -1.9145 -0.1798 28 7 3.8638 -1.2924 -0.0803 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1773 -2.0050 3.1008 37 1 5.2574 -4.1640 2.5698 38 1 6.6141 -4.4794 3.6822 39 1 5.4455 -6.4186 1.6330 40 1 5.3181 -6.5416 3.4044 41 1 7.1077 -8.0229 2.5610 42 1 7.7957 -6.7186 3.5578 43 1 9.7602 -7.5949 2.3067 44 1 12.6333 -9.0803 1.4904 45 1 9.0292 -4.8057 2.4416 46 1 8.9638 -4.6645 0.6658 47 1 5.5677 -1.8989 -1.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999161011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:58 Heat of formation + Delta-G solvation = 2.411825 kcal Electronic energy + Delta-G solvation = -28740.348139 eV Core-core repulsion = 24731.717652 eV Total energy + Delta-G solvation = -4008.630487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85841 -39.98448 -38.89830 -37.27307 -34.98869 -34.15604 -33.82349 -32.25938 -31.24098 -30.88361 -28.23399 -27.76810 -26.09302 -25.32971 -24.22989 -23.83358 -22.02694 -21.76283 -20.76913 -19.32301 -19.05739 -18.27295 -17.12578 -17.04243 -16.47515 -16.15267 -15.43192 -15.30187 -15.17130 -14.79016 -14.55708 -14.23093 -14.17451 -13.91706 -13.61508 -13.39954 -13.21857 -12.95865 -12.83991 -12.80926 -12.59479 -12.45377 -12.28540 -11.96908 -11.77199 -11.40952 -11.22138 -11.17085 -10.89574 -10.82320 -10.55995 -10.39346 -10.20923 -10.15420 -9.79980 -9.70407 -9.23132 -9.09157 -9.04553 -8.31215 -6.98557 -5.77474 -3.07159 0.21924 0.60846 2.33621 2.65602 3.06603 3.42016 3.45501 3.51793 3.54112 3.59649 3.80751 4.06025 4.35288 4.44743 4.53202 4.60239 4.72533 4.80603 5.03870 5.06302 5.17249 5.19352 5.24571 5.26492 5.31422 5.40034 5.50496 5.56199 5.64658 5.69056 5.70753 5.84521 5.94444 6.08095 6.16582 6.21658 6.27803 6.40362 6.52124 6.58963 6.69744 6.77527 6.84685 7.02709 7.22223 7.63324 7.73391 8.25423 8.40802 9.52546 10.06738 10.42136 11.44819 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.002322 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.439937 B =12057.253968 C =12769.628618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 C -0.170 4.170 4 O -0.290 6.290 5 C 0.295 3.705 6 C 0.036 3.964 7 N -0.367 5.367 8 C -0.009 4.009 9 C 0.571 3.429 10 O -0.534 6.534 11 N -0.581 5.581 12 C 0.081 3.919 13 C -0.131 4.131 14 C -0.127 4.127 15 C 0.169 3.831 16 H 0.051 0.949 17 N -0.718 5.718 18 C -0.241 4.241 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.090 3.910 27 C 0.157 3.843 28 N -0.500 5.500 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.183 0.817 37 H 0.126 0.874 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.386 0.614 44 H 0.255 0.745 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.863 17.152 2.117 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.227 4.227 4 O -0.195 6.195 5 C 0.111 3.889 6 C -0.130 4.130 7 N -0.085 5.085 8 C -0.147 4.147 9 C 0.356 3.644 10 O -0.411 6.411 11 N -0.313 5.313 12 C -0.041 4.041 13 C -0.170 4.170 14 C -0.165 4.165 15 C 0.058 3.942 16 H 0.069 0.931 17 N -0.358 5.358 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.034 4.034 27 C -0.002 4.002 28 N -0.229 5.229 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.200 0.800 37 H 0.143 0.857 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -24.512 17.322 1.667 30.061 hybrid contribution 0.778 -0.224 -0.624 1.023 sum -23.734 17.098 1.043 29.270 Atomic orbital electron populations 1.21917 0.92345 1.03255 1.03266 1.22509 0.94861 0.92943 0.87597 1.22230 1.02236 0.95307 1.02951 1.86303 1.30584 1.63494 1.39125 1.21255 0.86734 0.89757 0.91119 1.23142 0.94065 0.97030 0.98723 1.68506 1.04897 1.11444 1.23627 1.22130 0.98004 1.02789 0.91801 1.17514 0.84450 0.80490 0.81976 1.90824 1.48782 1.65800 1.35701 1.48148 1.19245 1.32473 1.31387 1.22687 0.95375 0.95503 0.90585 1.21924 0.98049 0.95104 1.01928 1.21842 0.95014 1.00180 0.99484 1.20483 0.88257 0.89129 0.96352 0.93139 1.42392 1.20862 1.63616 1.08968 1.19322 1.01198 1.28960 0.87749 0.90966 1.24755 0.98124 1.00909 0.97004 1.69673 1.22043 1.42087 1.24183 0.86114 0.79994 0.77356 0.82750 1.20423 1.21795 1.21882 1.22897 0.82780 0.94494 1.03217 1.23510 0.89094 0.87979 0.99611 1.68185 1.09082 1.21341 1.24338 0.91426 0.90217 0.91629 0.88992 0.91919 0.90740 0.91751 0.79960 0.85730 0.91467 0.92082 0.91107 0.91548 0.92023 0.78044 0.93528 0.91684 0.88994 0.79732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.56 37.16 0.36 -0.36 16 2 C 0.08 0.53 3.11 -26.73 -0.08 0.45 16 3 C -0.17 -1.05 9.53 37.16 0.35 -0.69 16 4 O -0.29 -2.46 9.76 -18.12 -0.18 -2.64 16 5 C 0.29 2.84 7.47 -16.71 -0.12 2.71 16 6 C 0.04 0.32 11.18 -17.16 -0.19 0.13 16 7 N -0.37 -4.11 6.55 -9.49 -0.06 -4.18 16 8 C -0.01 -0.11 6.43 -82.89 -0.53 -0.65 16 9 C 0.57 9.39 7.61 -12.30 -0.09 9.30 16 10 O -0.53 -10.44 15.97 5.32 0.09 -10.36 16 11 N -0.58 -9.43 2.97 -173.85 -0.52 -9.95 16 12 C 0.08 1.06 6.00 -3.71 -0.02 1.04 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 14 C -0.13 -2.06 5.35 -26.69 -0.14 -2.20 16 15 C 0.17 3.40 2.92 -67.82 -0.20 3.21 16 16 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 17 N -0.72 -17.95 5.12 -53.31 -0.27 -18.23 16 18 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 19 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 22 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 C 0.09 1.74 6.02 -3.71 -0.02 1.72 16 27 C 0.16 1.81 10.76 -17.02 -0.18 1.63 16 28 N -0.50 -5.32 8.80 -12.76 -0.11 -5.43 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.71 6.99 -51.93 -0.36 0.34 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.48 3.99 -77.14 -0.31 1.17 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.39 10.14 7.80 -40.82 -0.32 9.82 16 44 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.09 2.03 7.01 -51.93 -0.36 1.67 16 47 H 0.19 1.97 7.81 -52.49 -0.41 1.56 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -32.47 384.14 -8.08 -40.55 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.22 Total: 7.03 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.29 Total: 7.08 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.24 Total: -65.18 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.09 Total: -12.99 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.47 -8.08 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999161011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.962 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds