Wall clock time and date at job start Tue Mar 31 2020 18:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46730 * 2 1 4 4 O 1.42902 * 109.47194 * 119.99518 * 2 1 3 5 5 C 1.35475 * 116.99720 * 150.00010 * 4 2 1 6 6 C 1.39640 * 119.97529 * 179.97438 * 5 4 2 7 7 N 1.31530 * 120.03786 * 179.72167 * 6 5 4 8 8 C 1.33204 * 119.99213 * 0.55244 * 7 6 5 9 9 C 1.47901 * 120.02671 * 179.74236 * 8 7 6 10 10 O 1.21549 * 120.00074 * 202.53635 * 9 8 7 11 11 N 1.34779 * 120.00020 * 22.53415 * 9 8 7 12 12 C 1.46929 * 120.62840 * 359.55089 * 11 9 8 13 13 C 1.53194 * 108.77338 * 126.36741 * 12 11 9 14 14 C 1.53038 * 109.31616 * 54.63325 * 13 12 11 15 15 C 1.53035 * 109.53733 * 298.63564 * 14 13 12 16 16 H 1.09003 * 109.49834 * 301.38023 * 15 14 13 17 17 N 1.46499 * 109.49830 * 181.31434 * 15 14 13 18 18 C 1.36938 * 120.00405 * 154.99711 * 17 15 14 19 19 H 1.08004 * 119.99739 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00635 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99708 * 359.72379 * 20 18 17 22 22 Si 1.86797 * 120.00205 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47243 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47097 * 120.00037 * 22 20 18 25 25 H 1.48501 * 109.47080 * 239.99883 * 22 20 18 26 26 C 1.46928 * 120.63291 * 179.52124 * 11 9 8 27 27 C 1.39391 * 119.94911 * 359.47238 * 8 7 6 28 28 N 1.32079 * 119.96442 * 0.24686 * 27 8 7 29 29 H 1.08996 * 109.47460 * 300.00277 * 1 2 3 30 30 H 1.09006 * 109.46955 * 60.00396 * 1 2 3 31 31 H 1.08995 * 109.46743 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47087 * 239.99971 * 2 1 3 33 33 H 1.08999 * 109.47058 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47326 * 299.99774 * 3 2 1 35 35 H 1.08996 * 109.47375 * 59.99671 * 3 2 1 36 36 H 1.08001 * 119.97874 * 0.02562 * 6 5 4 37 37 H 1.08996 * 109.58499 * 6.58182 * 12 11 9 38 38 H 1.09000 * 109.58160 * 246.15324 * 12 11 9 39 39 H 1.09002 * 109.49386 * 294.67854 * 13 12 11 40 40 H 1.08997 * 109.52085 * 174.60453 * 13 12 11 41 41 H 1.08997 * 109.46017 * 178.61049 * 14 13 12 42 42 H 1.09007 * 109.44323 * 58.64535 * 14 13 12 43 43 H 0.97001 * 120.00278 * 334.99651 * 17 15 14 44 44 H 0.97002 * 120.00112 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.58370 * 113.84464 * 26 11 9 46 46 H 1.09005 * 109.58163 * 353.42596 * 26 11 9 47 47 H 1.08000 * 120.01961 * 180.27034 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 3.1970 -1.3119 1.0655 6 6 3.7214 -1.9897 2.1680 7 7 4.8746 -2.6145 2.0693 8 6 5.5482 -2.5916 0.9204 9 6 6.8477 -3.2891 0.8103 10 8 7.6460 -2.9558 -0.0436 11 7 7.1468 -4.2943 1.6568 12 6 6.1963 -4.7020 2.7004 13 6 5.9461 -6.2085 2.5782 14 6 7.2846 -6.9491 2.6230 15 6 8.1541 -6.5067 1.4439 16 1 7.6329 -6.7145 0.5094 17 7 9.4225 -7.2392 1.4698 18 6 10.1316 -7.4217 0.3126 19 1 9.7559 -7.0253 -0.6191 20 6 11.3332 -8.1162 0.3370 21 7 11.7938 -8.5947 1.4734 22 14 12.3008 -8.3645 -1.2415 23 1 11.5761 -7.7295 -2.3714 24 1 13.6428 -7.7441 -1.1023 25 1 12.4524 -9.8180 -1.5057 26 6 8.4293 -5.0037 1.5532 27 6 5.0246 -1.9145 -0.1798 28 7 3.8638 -1.2924 -0.0803 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1773 -2.0050 3.1008 37 1 5.2574 -4.1640 2.5698 38 1 6.6141 -4.4794 3.6822 39 1 5.4455 -6.4186 1.6330 40 1 5.3181 -6.5416 3.4044 41 1 7.1077 -8.0229 2.5610 42 1 7.7957 -6.7186 3.5578 43 1 9.7602 -7.5949 2.3067 44 1 12.6333 -9.0803 1.4904 45 1 9.0292 -4.8057 2.4416 46 1 8.9638 -4.6645 0.6658 47 1 5.5677 -1.8989 -1.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999161011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:57 Heat of formation + Delta-G solvation = -20.384535 kcal Electronic energy + Delta-G solvation = -28741.336663 eV Core-core repulsion = 24731.717652 eV Total energy + Delta-G solvation = -4009.619012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.73010 -41.10521 -39.77285 -38.69093 -36.37289 -35.43089 -34.40506 -33.84737 -32.75539 -31.92008 -29.93914 -28.19972 -27.20868 -26.27493 -25.80758 -25.18339 -23.26534 -22.63092 -22.04029 -20.68100 -19.75664 -19.20530 -19.11485 -18.22602 -17.39454 -17.21569 -16.79893 -16.29305 -16.08620 -16.05140 -15.76191 -15.49562 -15.28621 -15.22737 -15.00735 -14.67550 -14.31981 -14.04759 -13.93741 -13.78461 -13.43775 -13.31071 -13.21048 -12.98994 -12.93459 -12.81806 -12.52890 -12.49838 -12.16113 -11.97465 -11.90312 -11.85908 -11.78016 -11.51118 -11.37600 -11.28645 -11.09869 -10.17683 -10.00028 -9.70712 -9.02442 -7.98608 -5.28003 -0.68436 -0.20182 1.44272 1.45713 1.52715 1.55805 1.61052 1.87413 2.47897 2.53453 2.79416 2.85607 3.25741 3.34548 3.52919 3.79793 3.84399 3.94925 3.98470 4.03171 4.10098 4.21977 4.26175 4.38227 4.39893 4.45297 4.52041 4.69773 4.73543 4.75386 4.80944 4.86917 4.87723 4.97500 5.04691 5.11597 5.18818 5.21969 5.25869 5.37216 5.44589 5.46458 5.59811 5.86262 5.89160 6.23783 6.29446 6.45835 6.97012 7.30608 8.02226 8.27976 9.24205 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.002322 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.439937 B =12057.253968 C =12769.628618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.167 4.167 4 O -0.287 6.287 5 C 0.301 3.699 6 C 0.054 3.946 7 N -0.371 5.371 8 C -0.027 4.027 9 C 0.568 3.432 10 O -0.577 6.577 11 N -0.583 5.583 12 C 0.080 3.920 13 C -0.121 4.121 14 C -0.118 4.118 15 C 0.168 3.832 16 H 0.033 0.967 17 N -0.729 5.729 18 C -0.243 4.243 19 H 0.067 0.933 20 C -0.070 4.070 21 N -0.964 5.964 22 Si 0.969 3.031 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.288 1.288 26 C 0.105 3.895 27 C 0.158 3.842 28 N -0.506 5.506 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.223 0.777 37 H 0.146 0.854 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.378 0.622 44 H 0.253 0.747 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.075 18.314 2.989 33.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.224 4.224 4 O -0.191 6.191 5 C 0.116 3.884 6 C -0.114 4.114 7 N -0.089 5.089 8 C -0.163 4.163 9 C 0.355 3.645 10 O -0.457 6.457 11 N -0.314 5.314 12 C -0.041 4.041 13 C -0.160 4.160 14 C -0.157 4.157 15 C 0.058 3.942 16 H 0.051 0.949 17 N -0.369 5.369 18 C -0.375 4.375 19 H 0.085 0.915 20 C -0.262 4.262 21 N -0.614 5.614 22 Si 0.798 3.202 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.215 1.215 26 C -0.020 4.020 27 C 0.000 4.000 28 N -0.236 5.236 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.239 0.761 37 H 0.162 0.838 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.210 0.790 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -27.774 18.504 2.532 33.470 hybrid contribution 1.562 -0.435 -0.869 1.840 sum -26.212 18.069 1.663 31.880 Atomic orbital electron populations 1.21926 0.90422 1.03562 1.04393 1.22745 0.96302 0.92952 0.86609 1.22217 1.00992 0.95107 1.04099 1.86326 1.29720 1.63101 1.39946 1.21533 0.86830 0.89067 0.90958 1.23736 0.92854 0.95071 0.99725 1.68351 1.05649 1.12301 1.22614 1.21504 0.97143 1.04398 0.93236 1.18000 0.85371 0.80171 0.81002 1.90789 1.50507 1.67031 1.37377 1.48173 1.18605 1.32278 1.32335 1.22972 0.95436 0.95742 0.89961 1.21908 0.96275 0.94438 1.03374 1.21754 0.96106 1.00328 0.97492 1.20631 0.86819 0.89131 0.97578 0.94853 1.42519 1.22238 1.64369 1.07730 1.19565 1.01442 1.27942 0.88560 0.91501 1.25507 0.99294 1.01475 0.99971 1.69802 1.22392 1.43264 1.25937 0.85139 0.78344 0.77173 0.79516 1.19665 1.21888 1.21522 1.22346 0.84291 0.94087 1.01277 1.23447 0.89416 0.87798 0.99348 1.68224 1.08740 1.21427 1.25160 0.90832 0.88578 0.91734 0.89960 0.93768 0.89162 0.91104 0.76080 0.83815 0.90295 0.92389 0.87343 0.91975 0.91488 0.78982 0.93854 0.92044 0.92644 0.79811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.56 71.98 0.69 -0.28 16 2 C 0.07 0.80 3.11 30.60 0.10 0.89 16 3 C -0.17 -1.71 9.53 71.98 0.69 -1.03 16 4 O -0.29 -4.03 9.76 -87.75 -0.86 -4.88 16 5 C 0.30 5.02 7.47 84.92 0.63 5.65 16 6 C 0.05 0.77 11.18 85.08 0.95 1.72 16 7 N -0.37 -7.42 6.55 -183.93 -1.20 -8.63 16 8 C -0.03 -0.67 6.43 41.77 0.27 -0.41 16 9 C 0.57 19.08 7.61 86.80 0.66 19.74 16 10 O -0.58 -23.77 15.97 -3.87 -0.06 -23.83 16 11 N -0.58 -19.00 2.97 -822.22 -2.44 -21.44 16 12 C 0.08 1.91 6.00 86.36 0.52 2.43 16 13 C -0.12 -2.84 6.08 30.67 0.19 -2.65 16 14 C -0.12 -3.74 5.35 30.62 0.16 -3.58 16 15 C 0.17 6.95 2.92 45.07 0.13 7.08 16 16 H 0.03 1.48 8.08 -2.39 -0.02 1.46 16 17 N -0.73 -37.62 5.12 -322.58 -1.65 -39.27 16 18 C -0.24 -14.02 9.93 84.03 0.83 -13.19 16 19 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 20 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 21 N -0.96 -59.45 13.06 21.65 0.28 -59.17 16 22 Si 0.97 47.73 29.55 68.60 2.03 49.76 16 23 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 26 C 0.11 4.22 6.02 86.36 0.52 4.74 16 27 C 0.16 3.60 10.76 84.93 0.91 4.52 16 28 N -0.51 -10.09 8.80 -307.09 -2.70 -12.79 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 1.13 6.99 -2.39 -0.02 1.11 16 33 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.22 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.15 2.98 3.99 -52.16 -0.21 2.77 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.38 20.46 7.80 -92.71 -0.72 19.74 16 44 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 46 H 0.05 2.61 7.01 -2.38 -0.02 2.59 16 47 H 0.18 4.08 7.81 -2.91 -0.02 4.06 16 Total: -1.00 -72.84 384.14 1.17 -71.67 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.06 Total: 26.57 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 7.72 Total: 22.00 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -7.72 Total: -141.29 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.92 Total: -28.72 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -72.84 1.17 -71.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999161011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.290 kcal (2) G-P(sol) polarization free energy of solvation -72.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds