Wall clock time and date at job start Tue Mar 31 2020 18:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47387 * 2 1 4 4 O 1.42897 * 109.47241 * 120.00428 * 2 1 3 5 5 C 1.35483 * 116.99956 * 90.00053 * 4 2 1 6 6 C 1.39633 * 119.97802 * 180.02562 * 5 4 2 7 7 N 1.31525 * 120.04239 * 179.97438 * 6 5 4 8 8 C 1.33213 * 119.98829 * 0.02562 * 7 6 5 9 9 C 1.47906 * 120.02408 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00139 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00041 * 359.72472 * 9 8 7 12 12 C 1.46496 * 120.00136 * 180.27899 * 11 9 8 13 13 C 1.53044 * 109.46003 * 275.06563 * 12 11 9 14 14 C 1.53187 * 109.31422 * 178.61247 * 13 12 11 15 15 N 1.46924 * 108.77696 * 54.63741 * 14 13 12 16 16 C 1.36935 * 120.63448 * 126.41148 * 15 14 13 17 17 H 1.07994 * 119.99871 * 332.60464 * 16 15 14 18 18 C 1.38821 * 119.99999 * 152.60871 * 16 15 14 19 19 N 1.31613 * 119.99532 * 159.34582 * 18 16 15 20 20 Si 1.86799 * 120.00007 * 339.34486 * 18 16 15 21 21 H 1.48498 * 109.47141 * 92.94172 * 20 18 16 22 22 H 1.48494 * 109.47198 * 212.94405 * 20 18 16 23 23 H 1.48500 * 109.46976 * 332.94457 * 20 18 16 24 24 C 1.46934 * 118.73498 * 306.38955 * 15 14 13 25 25 C 1.53041 * 109.46531 * 154.99701 * 12 11 9 26 26 C 1.39387 * 119.95374 * 0.24851 * 8 7 6 27 27 N 1.32083 * 119.95808 * 359.50645 * 26 8 7 28 28 H 1.08999 * 109.46923 * 59.99171 * 1 2 3 29 29 H 1.08994 * 109.47284 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46739 * 299.99806 * 1 2 3 31 31 H 1.09004 * 109.46739 * 240.00193 * 2 1 3 32 32 H 1.08997 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47125 * 300.00703 * 3 2 1 34 34 H 1.08996 * 109.46707 * 60.00184 * 3 2 1 35 35 H 1.08003 * 119.97970 * 359.97438 * 6 5 4 36 36 H 0.96997 * 120.00178 * 0.27272 * 11 9 8 37 37 H 1.09006 * 109.46184 * 35.02325 * 12 11 9 38 38 H 1.08998 * 109.49396 * 298.56729 * 13 12 11 39 39 H 1.09003 * 109.49678 * 58.65939 * 13 12 11 40 40 H 1.08999 * 109.58820 * 294.85070 * 14 13 12 41 41 H 1.09002 * 109.70322 * 174.48970 * 14 13 12 42 42 H 0.97007 * 119.99969 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.58627 * 293.82144 * 24 15 14 44 44 H 1.08999 * 109.70239 * 173.46718 * 24 15 14 45 45 H 1.09004 * 109.49515 * 301.33935 * 25 12 11 46 46 H 1.08998 * 109.49693 * 61.43151 * 25 12 11 47 47 H 1.07999 * 120.02416 * 179.72545 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2114 -2.0091 1.0652 6 6 2.6757 -2.7294 2.1676 7 7 2.8748 -4.0259 2.0706 8 6 2.6337 -4.6523 0.9199 9 6 2.8578 -6.1102 0.8098 10 8 2.6382 -6.6812 -0.2405 11 7 3.3113 -6.8044 1.8723 12 6 3.5390 -8.2473 1.7615 13 6 2.2268 -8.9918 2.0185 14 6 2.4610 -10.4981 1.8677 15 7 3.5640 -10.8962 2.7530 16 6 3.4021 -11.9135 3.6553 17 1 2.4211 -12.1354 4.0485 18 6 4.4990 -12.6594 4.0645 19 7 4.4494 -13.3391 5.1905 20 14 6.0453 -12.6983 3.0172 21 1 6.9826 -11.6430 3.4789 22 1 6.6953 -14.0274 3.1434 23 1 5.6872 -12.4553 1.5967 24 6 4.8442 -10.1823 2.6514 25 6 4.5832 -8.6795 2.7934 26 6 2.1757 -3.9320 -0.1820 27 7 1.9719 -2.6309 -0.0810 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 2.8716 -2.2217 3.1005 36 1 3.4869 -6.3487 2.7103 37 1 3.8994 -8.4822 0.7599 38 1 1.8786 -8.7770 3.0288 39 1 1.4767 -8.6663 1.2977 40 1 2.7218 -10.7258 0.8341 41 1 1.5567 -11.0402 2.1443 42 1 5.2161 -13.8600 5.4767 43 1 5.2992 -10.3841 1.6818 44 1 5.5136 -10.5135 3.4453 45 1 5.5103 -8.1317 2.6243 46 1 4.2128 -8.4677 3.7964 47 1 1.9841 -4.4379 -1.1167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002815786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:20 Heat of formation + Delta-G solvation = -2.258167 kcal Electronic energy + Delta-G solvation = -28304.610951 eV Core-core repulsion = 24295.777957 eV Total energy + Delta-G solvation = -4008.832993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85037 -39.96183 -39.01393 -37.57874 -34.94236 -34.40147 -33.87962 -32.21465 -31.18838 -30.42798 -29.89038 -27.82268 -25.89340 -25.39835 -24.42517 -22.95059 -22.20423 -21.84890 -20.71327 -19.71762 -19.10141 -18.44313 -17.90835 -16.70960 -16.52723 -16.08722 -15.50683 -15.40762 -15.27699 -14.95347 -14.78464 -14.26418 -14.15547 -13.96628 -13.75695 -13.48789 -13.13551 -13.01151 -12.90098 -12.86170 -12.57743 -12.38434 -12.24592 -11.99150 -11.82808 -11.77877 -11.36838 -11.25965 -11.01614 -10.82551 -10.55738 -10.44033 -10.28629 -10.08699 -9.82307 -9.58740 -9.45543 -9.22551 -8.82347 -8.62608 -6.98621 -5.94225 -3.30022 0.10439 0.57033 2.26790 2.54081 3.02064 3.32065 3.44790 3.49837 3.51571 3.53011 3.70527 4.00010 4.29856 4.39374 4.53521 4.59434 4.67074 4.74637 4.96109 5.01578 5.07045 5.12532 5.18285 5.20827 5.26183 5.33173 5.39934 5.52451 5.62520 5.66303 5.67961 5.82571 6.04479 6.08077 6.17417 6.31341 6.39617 6.52089 6.58572 6.61206 6.64552 6.67006 6.71236 6.92489 7.13788 7.56990 7.96627 8.14404 8.33690 8.94444 9.72540 10.10099 11.21706 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034523 B = 0.002028 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.856163 B =13804.178890 C =13941.458998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 C -0.151 4.151 4 O -0.289 6.289 5 C 0.297 3.703 6 C 0.045 3.955 7 N -0.376 5.376 8 C -0.016 4.016 9 C 0.577 3.423 10 O -0.533 6.533 11 N -0.701 5.701 12 C 0.149 3.851 13 C -0.142 4.142 14 C 0.151 3.849 15 N -0.606 5.606 16 C -0.259 4.259 17 H 0.086 0.914 18 C 0.022 3.978 19 N -0.908 5.908 20 Si 0.881 3.119 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.130 3.870 25 C -0.141 4.141 26 C 0.158 3.842 27 N -0.502 5.502 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.184 0.816 36 H 0.407 0.593 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.026 0.974 41 H 0.066 0.934 42 H 0.262 0.738 43 H 0.028 0.972 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 29.599 -9.715 31.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.021 3.979 3 C -0.208 4.208 4 O -0.194 6.194 5 C 0.113 3.887 6 C -0.122 4.122 7 N -0.093 5.093 8 C -0.155 4.155 9 C 0.360 3.640 10 O -0.410 6.410 11 N -0.350 5.350 12 C 0.046 3.954 13 C -0.182 4.182 14 C 0.025 3.975 15 N -0.330 5.330 16 C -0.387 4.387 17 H 0.104 0.896 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.712 3.288 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.195 1.195 24 C 0.003 3.997 25 C -0.181 4.181 26 C -0.001 4.001 27 N -0.231 5.231 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.201 0.799 36 H 0.243 0.757 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.912 29.194 -10.153 31.297 hybrid contribution 0.914 0.265 -0.227 0.978 sum -3.998 29.459 -10.380 31.489 Atomic orbital electron populations 1.22233 0.94359 1.03116 1.03030 1.22526 0.94798 0.93083 0.87520 1.21920 1.02146 0.93408 1.03332 1.86310 1.78969 1.14915 1.39190 1.21294 0.90271 0.85954 0.91155 1.22977 1.01120 0.89362 0.98788 1.68373 1.08664 1.08397 1.23846 1.22081 1.05160 0.96598 0.91699 1.17459 0.77928 0.84203 0.84369 1.90814 1.52149 1.69581 1.28474 1.46136 1.64902 1.09807 1.14196 1.21098 0.96465 0.77176 1.00677 1.22393 0.96152 0.98009 1.01619 1.20895 0.92103 0.91404 0.93147 1.44402 1.08975 1.37825 1.41764 1.18927 0.96567 1.07381 1.15843 0.89641 1.25289 0.97927 0.97306 0.97115 1.69838 1.31132 1.33960 1.20176 0.86970 0.83785 0.75746 0.82313 1.21630 1.23128 1.19476 1.21306 0.89613 0.89137 0.99628 1.22352 0.97394 0.99315 0.98991 1.23554 0.89221 0.87718 0.99634 1.68204 1.19613 1.11007 1.24280 0.90691 0.91930 0.91683 0.89000 0.91636 0.90167 0.91372 0.79939 0.75719 0.89634 0.91690 0.92183 0.95632 0.91515 0.92783 0.95437 0.90462 0.92135 0.90966 0.79595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.53 37.16 0.35 -0.63 16 2 C 0.08 0.50 3.11 -26.73 -0.08 0.41 16 3 C -0.15 -0.66 9.56 37.16 0.36 -0.31 16 4 O -0.29 -2.37 9.76 -18.14 -0.18 -2.55 16 5 C 0.30 2.75 7.47 -16.71 -0.12 2.63 16 6 C 0.04 0.40 11.18 -17.16 -0.19 0.20 16 7 N -0.38 -4.06 9.70 -9.49 -0.09 -4.15 16 8 C -0.02 -0.19 6.74 -82.88 -0.56 -0.75 16 9 C 0.58 8.16 7.77 -12.30 -0.10 8.07 16 10 O -0.53 -8.88 16.00 5.32 0.09 -8.80 16 11 N -0.70 -9.73 5.07 -54.69 -0.28 -10.01 16 12 C 0.15 2.41 2.42 -67.89 -0.16 2.25 16 13 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 14 C 0.15 3.02 6.52 -3.71 -0.02 2.99 16 15 N -0.61 -14.28 2.77 -172.32 -0.48 -14.76 16 16 C -0.26 -7.19 10.04 -15.06 -0.15 -7.34 16 17 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 18 C 0.02 0.65 5.23 -17.43 -0.09 0.55 16 19 N -0.91 -27.72 13.97 55.49 0.78 -26.95 16 20 Si 0.88 22.26 24.35 -169.99 -4.14 18.12 16 21 H -0.29 -6.98 6.62 56.52 0.37 -6.60 16 22 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.27 -6.73 6.63 56.52 0.37 -6.35 16 24 C 0.13 2.77 4.20 -3.71 -0.02 2.76 16 25 C -0.14 -2.40 5.55 -26.61 -0.15 -2.54 16 26 C 0.16 1.66 10.76 -17.02 -0.18 1.48 16 27 N -0.50 -5.00 8.80 -12.76 -0.11 -5.11 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.66 6.99 -51.93 -0.36 0.30 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.41 5.04 7.94 -40.82 -0.32 4.72 16 37 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 44 H 0.08 1.80 4.50 -51.93 -0.23 1.57 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.19 1.74 7.64 -52.49 -0.40 1.34 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -32.23 380.14 -7.14 -39.36 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.18 Total: 1.91 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.27 Total: 7.20 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.18 Total: -60.98 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.09 Total: -11.34 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.23 -7.14 -39.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002815786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.105 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds