Wall clock time and date at job start Tue Mar 31 2020 18:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47387 * 2 1 4 4 O 1.42897 * 109.47241 * 120.00428 * 2 1 3 5 5 C 1.35483 * 116.99956 * 90.00053 * 4 2 1 6 6 C 1.39633 * 119.97802 * 180.02562 * 5 4 2 7 7 N 1.31525 * 120.04239 * 179.97438 * 6 5 4 8 8 C 1.33213 * 119.98829 * 0.02562 * 7 6 5 9 9 C 1.47906 * 120.02408 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00139 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00041 * 359.72472 * 9 8 7 12 12 C 1.46496 * 120.00136 * 180.27899 * 11 9 8 13 13 C 1.53044 * 109.46003 * 275.06563 * 12 11 9 14 14 C 1.53187 * 109.31422 * 178.61247 * 13 12 11 15 15 N 1.46924 * 108.77696 * 54.63741 * 14 13 12 16 16 C 1.36935 * 120.63448 * 126.41148 * 15 14 13 17 17 H 1.07994 * 119.99871 * 332.60464 * 16 15 14 18 18 C 1.38821 * 119.99999 * 152.60871 * 16 15 14 19 19 N 1.31613 * 119.99532 * 159.34582 * 18 16 15 20 20 Si 1.86799 * 120.00007 * 339.34486 * 18 16 15 21 21 H 1.48498 * 109.47141 * 92.94172 * 20 18 16 22 22 H 1.48494 * 109.47198 * 212.94405 * 20 18 16 23 23 H 1.48500 * 109.46976 * 332.94457 * 20 18 16 24 24 C 1.46934 * 118.73498 * 306.38955 * 15 14 13 25 25 C 1.53041 * 109.46531 * 154.99701 * 12 11 9 26 26 C 1.39387 * 119.95374 * 0.24851 * 8 7 6 27 27 N 1.32083 * 119.95808 * 359.50645 * 26 8 7 28 28 H 1.08999 * 109.46923 * 59.99171 * 1 2 3 29 29 H 1.08994 * 109.47284 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46739 * 299.99806 * 1 2 3 31 31 H 1.09004 * 109.46739 * 240.00193 * 2 1 3 32 32 H 1.08997 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47125 * 300.00703 * 3 2 1 34 34 H 1.08996 * 109.46707 * 60.00184 * 3 2 1 35 35 H 1.08003 * 119.97970 * 359.97438 * 6 5 4 36 36 H 0.96997 * 120.00178 * 0.27272 * 11 9 8 37 37 H 1.09006 * 109.46184 * 35.02325 * 12 11 9 38 38 H 1.08998 * 109.49396 * 298.56729 * 13 12 11 39 39 H 1.09003 * 109.49678 * 58.65939 * 13 12 11 40 40 H 1.08999 * 109.58820 * 294.85070 * 14 13 12 41 41 H 1.09002 * 109.70322 * 174.48970 * 14 13 12 42 42 H 0.97007 * 119.99969 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.58627 * 293.82144 * 24 15 14 44 44 H 1.08999 * 109.70239 * 173.46718 * 24 15 14 45 45 H 1.09004 * 109.49515 * 301.33935 * 25 12 11 46 46 H 1.08998 * 109.49693 * 61.43151 * 25 12 11 47 47 H 1.07999 * 120.02416 * 179.72545 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2114 -2.0091 1.0652 6 6 2.6757 -2.7294 2.1676 7 7 2.8748 -4.0259 2.0706 8 6 2.6337 -4.6523 0.9199 9 6 2.8578 -6.1102 0.8098 10 8 2.6382 -6.6812 -0.2405 11 7 3.3113 -6.8044 1.8723 12 6 3.5390 -8.2473 1.7615 13 6 2.2268 -8.9918 2.0185 14 6 2.4610 -10.4981 1.8677 15 7 3.5640 -10.8962 2.7530 16 6 3.4021 -11.9135 3.6553 17 1 2.4211 -12.1354 4.0485 18 6 4.4990 -12.6594 4.0645 19 7 4.4494 -13.3391 5.1905 20 14 6.0453 -12.6983 3.0172 21 1 6.9826 -11.6430 3.4789 22 1 6.6953 -14.0274 3.1434 23 1 5.6872 -12.4553 1.5967 24 6 4.8442 -10.1823 2.6514 25 6 4.5832 -8.6795 2.7934 26 6 2.1757 -3.9320 -0.1820 27 7 1.9719 -2.6309 -0.0810 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 2.8716 -2.2217 3.1005 36 1 3.4869 -6.3487 2.7103 37 1 3.8994 -8.4822 0.7599 38 1 1.8786 -8.7770 3.0288 39 1 1.4767 -8.6663 1.2977 40 1 2.7218 -10.7258 0.8341 41 1 1.5567 -11.0402 2.1443 42 1 5.2161 -13.8600 5.4767 43 1 5.2992 -10.3841 1.6818 44 1 5.5136 -10.5135 3.4453 45 1 5.5103 -8.1317 2.6243 46 1 4.2128 -8.4677 3.7964 47 1 1.9841 -4.4379 -1.1167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001002815786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:19 Heat of formation + Delta-G solvation = -26.400067 kcal Electronic energy + Delta-G solvation = -28305.657822 eV Core-core repulsion = 24295.777957 eV Total energy + Delta-G solvation = -4009.879865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62099 -41.00306 -39.86215 -39.02867 -36.19125 -35.43037 -34.41668 -34.03138 -32.29637 -31.98053 -31.29105 -28.21839 -27.18788 -26.33466 -25.64834 -24.51036 -23.57200 -22.67126 -21.78902 -21.24062 -19.75429 -19.43785 -18.99751 -18.43626 -17.47102 -17.21723 -16.85754 -16.26125 -16.12679 -16.06397 -15.93152 -15.56987 -15.35828 -15.21660 -14.75851 -14.74202 -14.49473 -14.21838 -14.17274 -13.82287 -13.48346 -13.43658 -13.26809 -13.05011 -12.96117 -12.59085 -12.56782 -12.48784 -12.27906 -12.03001 -11.91471 -11.81579 -11.77151 -11.57186 -11.49418 -11.31951 -10.72175 -10.43268 -10.18513 -9.85843 -8.95727 -8.14882 -5.47245 -0.70865 -0.17338 1.31125 1.44179 1.52910 1.57305 1.61918 1.96975 2.42961 2.58664 2.79045 2.89128 3.06558 3.25363 3.33920 3.70147 3.79802 3.83837 3.94136 3.96270 4.01184 4.20366 4.21895 4.31819 4.44248 4.48339 4.55958 4.63240 4.68798 4.70458 4.79352 4.84833 4.85424 4.92381 5.00818 5.01727 5.07236 5.16922 5.19548 5.23669 5.38338 5.44764 5.86531 5.87651 5.88206 6.13957 6.30980 6.55087 6.91733 7.06286 7.62476 8.02903 9.04830 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034523 B = 0.002028 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.856163 B =13804.178890 C =13941.458998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.289 6.289 5 C 0.300 3.700 6 C 0.052 3.948 7 N -0.383 5.383 8 C -0.033 4.033 9 C 0.580 3.420 10 O -0.562 6.562 11 N -0.694 5.694 12 C 0.159 3.841 13 C -0.129 4.129 14 C 0.147 3.853 15 N -0.619 5.619 16 C -0.248 4.248 17 H 0.052 0.948 18 C -0.034 4.034 19 N -0.956 5.956 20 Si 0.945 3.055 21 H -0.269 1.269 22 H -0.312 1.312 23 H -0.263 1.263 24 C 0.122 3.878 25 C -0.128 4.128 26 C 0.160 3.840 27 N -0.508 5.508 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.214 0.786 36 H 0.416 0.584 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.059 0.941 42 H 0.262 0.738 43 H 0.035 0.965 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 32.898 -10.758 34.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.193 6.193 5 C 0.116 3.884 6 C -0.117 4.117 7 N -0.101 5.101 8 C -0.171 4.171 9 C 0.365 3.635 10 O -0.441 6.441 11 N -0.344 5.344 12 C 0.054 3.946 13 C -0.169 4.169 14 C 0.022 3.978 15 N -0.343 5.343 16 C -0.378 4.378 17 H 0.070 0.930 18 C -0.229 4.229 19 N -0.602 5.602 20 Si 0.774 3.226 21 H -0.196 1.196 22 H -0.241 1.241 23 H -0.188 1.188 24 C -0.004 4.004 25 C -0.168 4.168 26 C 0.001 3.999 27 N -0.237 5.237 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.230 0.770 36 H 0.254 0.746 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.089 0.911 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.310 32.548 -11.225 34.698 hybrid contribution 0.593 -0.593 0.094 0.844 sum -3.717 31.955 -11.131 34.042 Atomic orbital electron populations 1.22219 0.93810 1.02275 1.04100 1.22759 0.95294 0.93965 0.86583 1.21931 1.02039 0.91979 1.04409 1.86327 1.78635 1.14272 1.40102 1.21512 0.89381 0.86462 0.91057 1.23464 0.99821 0.88682 0.99704 1.68339 1.09005 1.09300 1.23422 1.21705 1.07276 0.95356 0.92724 1.17707 0.76979 0.85116 0.83701 1.90796 1.53333 1.70479 1.29464 1.45911 1.65003 1.08720 1.14763 1.20805 0.95404 0.78464 0.99889 1.22218 0.97143 0.95910 1.01628 1.21014 0.90791 0.93293 0.92710 1.44506 1.10662 1.37362 1.41815 1.18854 0.95171 1.08119 1.15626 0.92993 1.25897 1.01345 0.97637 0.98035 1.69965 1.32345 1.35877 1.22001 0.85941 0.80402 0.75604 0.80697 1.19584 1.24092 1.18782 1.21372 0.88207 0.91659 0.99116 1.22168 0.99067 0.96359 0.99204 1.23614 0.88812 0.87889 0.99567 1.68246 1.19983 1.10677 1.24824 0.89031 0.93657 0.91256 0.89788 0.91800 0.88426 0.90967 0.76957 0.74638 0.90370 0.92078 0.91300 0.94863 0.92229 0.92949 0.94722 0.92367 0.89265 0.91056 0.79050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.53 71.98 0.69 -0.93 16 2 C 0.07 0.76 3.11 30.60 0.10 0.86 16 3 C -0.15 -0.93 9.56 71.98 0.69 -0.24 16 4 O -0.29 -4.10 9.76 -87.83 -0.86 -4.96 16 5 C 0.30 4.95 7.47 84.92 0.63 5.59 16 6 C 0.05 0.78 11.18 85.08 0.95 1.73 16 7 N -0.38 -7.47 9.70 -183.93 -1.78 -9.25 16 8 C -0.03 -0.73 6.74 41.77 0.28 -0.45 16 9 C 0.58 15.56 7.77 86.80 0.67 16.23 16 10 O -0.56 -18.11 16.00 -3.87 -0.06 -18.17 16 11 N -0.69 -17.88 5.07 -445.21 -2.26 -20.14 16 12 C 0.16 4.83 2.42 45.02 0.11 4.94 16 13 C -0.13 -4.27 5.65 30.67 0.17 -4.09 16 14 C 0.15 5.82 6.52 86.36 0.56 6.38 16 15 N -0.62 -28.98 2.77 -699.10 -1.94 -30.91 16 16 C -0.25 -14.07 10.04 84.04 0.84 -13.22 16 17 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 18 C -0.03 -2.00 5.23 84.87 0.44 -1.56 16 19 N -0.96 -59.96 13.97 21.65 0.30 -59.65 16 20 Si 0.94 46.27 24.35 68.60 1.67 47.94 16 21 H -0.27 -12.25 6.62 99.48 0.66 -11.59 16 22 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 23 H -0.26 -12.46 6.63 99.48 0.66 -11.80 16 24 C 0.12 5.02 4.20 86.36 0.36 5.38 16 25 C -0.13 -4.08 5.55 30.67 0.17 -3.91 16 26 C 0.16 3.17 10.76 84.93 0.91 4.08 16 27 N -0.51 -9.37 8.80 -307.08 -2.70 -12.07 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 1.07 6.99 -2.39 -0.02 1.05 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.21 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.42 9.34 7.94 -92.71 -0.74 8.60 16 37 H 0.08 2.56 7.58 -2.38 -0.02 2.55 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 42 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 43 H 0.03 1.39 7.07 -2.39 -0.02 1.38 16 44 H 0.06 2.63 4.50 -2.39 -0.01 2.62 16 45 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.19 3.45 7.64 -2.91 -0.02 3.43 16 Total: -1.00 -70.15 380.14 0.12 -70.03 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.15 Total: 16.39 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 7.59 Total: 20.80 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -8.38 Total: -132.03 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.92 Total: -23.13 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.67 Total: 47.94 kcal Total: -70.15 0.12 -70.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002815786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.631 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds