Wall clock time and date at job start Tue Mar 31 2020 18:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46771 * 2 1 4 4 O 1.42891 * 109.47233 * 120.00178 * 2 1 3 5 5 C 1.35492 * 116.99821 * 150.00158 * 4 2 1 6 6 C 1.39628 * 119.97174 * 179.72337 * 5 4 2 7 7 N 1.31534 * 120.03574 * 179.75248 * 6 5 4 8 8 C 1.33220 * 119.98849 * 0.52354 * 7 6 5 9 9 C 1.47899 * 120.02288 * 179.75366 * 8 7 6 10 10 O 1.21556 * 119.99659 * 179.97438 * 9 8 7 11 11 N 1.34772 * 120.00355 * 359.97438 * 9 8 7 12 12 C 1.46503 * 120.00099 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47083 * 174.96294 * 12 11 9 14 14 H 1.08998 * 109.87518 * 55.56827 * 13 12 11 15 15 C 1.54325 * 109.88618 * 294.55346 * 13 12 11 16 16 C 1.55158 * 102.94364 * 218.39065 * 15 13 12 17 17 C 1.54913 * 101.58234 * 35.49993 * 16 15 13 18 18 N 1.47017 * 109.88171 * 176.74327 * 13 12 11 19 19 C 1.36942 * 125.64905 * 298.33445 * 18 13 12 20 20 H 1.07992 * 120.00058 * 345.85575 * 19 18 13 21 21 C 1.38817 * 119.99761 * 165.84893 * 19 18 13 22 22 N 1.31611 * 120.00409 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99442 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47707 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46993 * 120.00425 * 23 21 19 26 26 H 1.48507 * 109.47090 * 240.00043 * 23 21 19 27 27 C 1.39393 * 119.94816 * 359.73142 * 8 7 6 28 28 N 1.32071 * 119.96189 * 0.02562 * 27 8 7 29 29 H 1.08999 * 109.47420 * 59.99591 * 1 2 3 30 30 H 1.09003 * 109.46911 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47336 * 299.99337 * 1 2 3 32 32 H 1.08998 * 109.46900 * 240.00540 * 2 1 3 33 33 H 1.09005 * 109.47310 * 60.00576 * 3 2 1 34 34 H 1.09000 * 109.46944 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47482 * 300.00371 * 3 2 1 36 36 H 1.08005 * 119.98879 * 0.02562 * 6 5 4 37 37 H 0.97003 * 120.00118 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.47055 * 294.96777 * 12 11 9 39 39 H 1.09000 * 109.46820 * 54.96516 * 12 11 9 40 40 H 1.09007 * 110.71693 * 336.74788 * 15 13 12 41 41 H 1.08998 * 110.72353 * 100.02178 * 15 13 12 42 42 H 1.08999 * 111.00470 * 153.56938 * 16 15 13 43 43 H 1.09000 * 111.00283 * 277.42504 * 16 15 13 44 44 H 1.09003 * 110.36684 * 81.82851 * 17 16 15 45 45 H 1.08997 * 110.36722 * 204.04354 * 17 16 15 46 46 H 0.97000 * 120.00341 * 180.02562 * 22 21 19 47 47 H 1.07997 * 120.01430 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.1971 -1.3120 1.0652 6 6 3.7238 -1.9854 2.1692 7 7 4.8774 -2.6097 2.0707 8 6 5.5486 -2.5908 0.9201 9 6 6.8484 -3.2880 0.8102 10 8 7.4602 -3.2708 -0.2400 11 7 7.3544 -3.9422 1.8743 12 6 8.6416 -4.6332 1.7651 13 6 9.0434 -5.1824 3.1354 14 1 8.2516 -5.8222 3.5249 15 6 9.3042 -4.0164 4.1123 16 6 10.5241 -4.5153 4.9310 17 6 11.3222 -5.2949 3.8563 18 7 10.2955 -5.9444 3.0211 19 6 10.4778 -7.0712 2.2646 20 1 9.6232 -7.6017 1.8714 21 6 11.7610 -7.5314 2.0030 22 7 12.8025 -6.8852 2.4824 23 14 12.0096 -9.0681 0.9704 24 1 10.6887 -9.6039 0.5541 25 1 12.8085 -8.7306 -0.2350 26 1 12.7294 -10.0912 1.7708 27 6 5.0248 -1.9139 -0.1801 28 7 3.8641 -1.2918 -0.0804 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.6766 1.9564 0.8901 34 1 3.1299 1.4426 0.0005 35 1 1.6765 1.9564 -0.8899 36 1 3.1817 -1.9975 3.1033 37 1 6.8663 -3.9556 2.7124 38 1 8.5533 -5.4559 1.0555 39 1 9.4013 -3.9333 1.4171 40 1 9.5519 -3.1052 3.5677 41 1 8.4432 -3.8572 4.7614 42 1 11.1045 -3.6773 5.3172 43 1 10.2088 -5.1755 5.7390 44 1 11.9209 -4.6092 3.2567 45 1 11.9605 -6.0431 4.3262 46 1 13.6992 -7.2066 2.2993 47 1 5.5679 -1.8983 -1.1134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027882895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:39 Heat of formation + Delta-G solvation = -3.948172 kcal Electronic energy + Delta-G solvation = -28181.621941 eV Core-core repulsion = 24172.715663 eV Total energy + Delta-G solvation = -4008.906278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74380 -39.71884 -38.76296 -37.55904 -34.80225 -34.09797 -33.80595 -32.46829 -31.11813 -29.62082 -28.62794 -27.76614 -25.71499 -25.24595 -24.59802 -23.54151 -22.00507 -20.78711 -20.14973 -19.61469 -19.02032 -18.33457 -17.79682 -16.64895 -16.44260 -15.78781 -15.45384 -15.31022 -15.20300 -14.79462 -14.67349 -14.45075 -13.99338 -13.89937 -13.65833 -13.19820 -13.09440 -12.89221 -12.80955 -12.49999 -12.15559 -12.07554 -11.87922 -11.78267 -11.68674 -11.31812 -11.29222 -11.18289 -10.93788 -10.80110 -10.31116 -10.22917 -10.05900 -9.90735 -9.81209 -9.70185 -9.48280 -9.12832 -8.67035 -8.57037 -6.83879 -5.76273 -3.12834 0.21520 0.66835 2.35000 2.69337 3.20616 3.40340 3.46743 3.48555 3.58346 3.61172 3.82979 4.10449 4.35956 4.45157 4.48963 4.71941 4.74038 4.87292 5.06471 5.16422 5.21784 5.25682 5.31823 5.34604 5.42418 5.52896 5.58273 5.63724 5.68719 5.75521 5.83230 6.06882 6.13877 6.27529 6.47400 6.53833 6.59616 6.61411 6.69252 6.74130 6.80819 7.05866 7.24349 7.53071 7.61862 7.75710 7.80315 8.25426 8.35032 9.17927 9.78429 10.45674 11.35625 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023078 B = 0.002140 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.963759 B =13080.855213 C =13747.185369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 C -0.170 4.170 4 O -0.290 6.290 5 C 0.294 3.706 6 C 0.044 3.956 7 N -0.376 5.376 8 C -0.012 4.012 9 C 0.571 3.429 10 O -0.534 6.534 11 N -0.699 5.699 12 C 0.107 3.893 13 C 0.152 3.848 14 H 0.039 0.961 15 C -0.126 4.126 16 C -0.149 4.149 17 C 0.172 3.828 18 N -0.588 5.588 19 C -0.233 4.233 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.156 3.844 28 N -0.502 5.502 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.183 0.817 37 H 0.406 0.594 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.073 0.927 46 H 0.253 0.747 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.864 15.343 -0.467 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.227 4.227 4 O -0.195 6.195 5 C 0.111 3.889 6 C -0.123 4.123 7 N -0.093 5.093 8 C -0.151 4.151 9 C 0.354 3.646 10 O -0.411 6.411 11 N -0.349 5.349 12 C -0.018 4.018 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.164 4.164 16 C -0.187 4.187 17 C 0.047 3.953 18 N -0.313 5.313 19 C -0.361 4.361 20 H 0.095 0.905 21 C -0.199 4.199 22 N -0.561 5.561 23 Si 0.741 3.259 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.217 1.217 27 C -0.003 4.003 28 N -0.231 5.231 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.200 0.800 37 H 0.241 0.759 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -22.351 15.206 -1.091 27.055 hybrid contribution -0.061 -0.622 -0.466 0.779 sum -22.412 14.584 -1.557 26.784 Atomic orbital electron populations 1.21917 0.92352 1.03247 1.03270 1.22506 0.94862 0.92948 0.87610 1.22231 1.02230 0.95295 1.02958 1.86304 1.30591 1.63473 1.39112 1.21285 0.86734 0.89705 0.91222 1.22970 0.93418 0.97186 0.98715 1.68387 1.04776 1.12236 1.23920 1.22147 0.98293 1.03077 0.91608 1.17478 0.83273 0.79309 0.84560 1.90826 1.60031 1.61851 1.28417 1.45999 1.23242 1.51835 1.13824 1.22363 0.82058 0.96209 1.01194 1.21126 0.91320 0.91777 0.91433 0.94347 1.22610 0.98331 0.97740 0.97752 1.23011 0.97272 0.99573 0.98883 1.21466 0.90111 0.94672 0.89039 1.44496 1.06441 1.27497 1.52833 1.19041 0.92176 0.99866 1.25035 0.90547 1.24915 0.95499 0.99453 1.00080 1.69944 0.97570 1.40332 1.48282 0.86068 0.77777 0.82228 0.79832 1.20372 1.21614 1.21734 1.23556 0.89082 0.87984 0.99663 1.68187 1.09078 1.21541 1.24285 0.90220 0.91646 0.91406 0.89008 0.91734 0.91924 0.90737 0.80010 0.75916 0.91134 0.91254 0.91864 0.92250 0.92353 0.92277 0.95636 0.90852 0.93652 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.56 37.16 0.36 -0.38 16 2 C 0.08 0.54 3.11 -26.73 -0.08 0.46 16 3 C -0.17 -1.06 9.53 37.16 0.35 -0.71 16 4 O -0.29 -2.55 9.76 -18.17 -0.18 -2.73 16 5 C 0.29 2.94 7.47 -16.71 -0.12 2.82 16 6 C 0.04 0.42 11.18 -17.16 -0.19 0.23 16 7 N -0.38 -4.40 9.70 -9.49 -0.09 -4.49 16 8 C -0.01 -0.16 6.74 -82.88 -0.56 -0.72 16 9 C 0.57 9.18 7.80 -12.31 -0.10 9.09 16 10 O -0.53 -10.24 16.33 5.32 0.09 -10.16 16 11 N -0.70 -11.05 5.33 -61.23 -0.33 -11.37 16 12 C 0.11 2.06 5.08 -4.04 -0.02 2.04 16 13 C 0.15 3.01 3.21 -66.96 -0.21 2.80 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.13 -2.14 6.14 -24.90 -0.15 -2.29 16 16 C -0.15 -2.74 7.09 -24.58 -0.17 -2.91 16 17 C 0.17 4.09 5.42 -2.52 -0.01 4.08 16 18 N -0.59 -14.56 3.13 -162.57 -0.51 -15.07 16 19 C -0.23 -6.36 9.75 -15.05 -0.15 -6.50 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 22 N -0.92 -26.60 10.56 55.49 0.59 -26.02 16 23 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 C 0.16 1.83 10.76 -17.02 -0.18 1.64 16 28 N -0.50 -5.45 8.80 -12.76 -0.11 -5.56 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.72 6.99 -51.93 -0.36 0.36 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.18 1.18 8.06 -52.48 -0.42 0.75 16 37 H 0.41 5.59 7.70 -40.82 -0.31 5.28 16 38 H 0.07 1.52 7.90 -51.93 -0.41 1.11 16 39 H 0.07 1.48 8.06 -51.93 -0.42 1.06 16 40 H 0.06 1.06 7.80 -51.92 -0.40 0.66 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 45 H 0.07 1.94 6.90 -51.93 -0.36 1.58 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 47 H 0.19 1.99 7.64 -52.49 -0.40 1.59 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -31.61 389.46 -8.33 -39.94 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.28 Total: 3.02 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -1.35 Total: 9.48 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.45 Total: -62.52 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.09 Total: -12.88 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.61 -8.33 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027882895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.990 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds