Wall clock time and date at job start Tue Mar 31 2020 18:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46771 * 2 1 4 4 O 1.42891 * 109.47233 * 120.00178 * 2 1 3 5 5 C 1.35492 * 116.99821 * 150.00158 * 4 2 1 6 6 C 1.39628 * 119.97174 * 179.72337 * 5 4 2 7 7 N 1.31534 * 120.03574 * 179.75248 * 6 5 4 8 8 C 1.33220 * 119.98849 * 0.52354 * 7 6 5 9 9 C 1.47899 * 120.02288 * 179.75366 * 8 7 6 10 10 O 1.21556 * 119.99659 * 179.97438 * 9 8 7 11 11 N 1.34772 * 120.00355 * 359.97438 * 9 8 7 12 12 C 1.46503 * 120.00099 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47083 * 174.96294 * 12 11 9 14 14 H 1.08998 * 109.87518 * 55.56827 * 13 12 11 15 15 C 1.54325 * 109.88618 * 294.55346 * 13 12 11 16 16 C 1.55158 * 102.94364 * 218.39065 * 15 13 12 17 17 C 1.54913 * 101.58234 * 35.49993 * 16 15 13 18 18 N 1.47017 * 109.88171 * 176.74327 * 13 12 11 19 19 C 1.36942 * 125.64905 * 298.33445 * 18 13 12 20 20 H 1.07992 * 120.00058 * 345.85575 * 19 18 13 21 21 C 1.38817 * 119.99761 * 165.84893 * 19 18 13 22 22 N 1.31611 * 120.00409 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99442 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47707 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46993 * 120.00425 * 23 21 19 26 26 H 1.48507 * 109.47090 * 240.00043 * 23 21 19 27 27 C 1.39393 * 119.94816 * 359.73142 * 8 7 6 28 28 N 1.32071 * 119.96189 * 0.02562 * 27 8 7 29 29 H 1.08999 * 109.47420 * 59.99591 * 1 2 3 30 30 H 1.09003 * 109.46911 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47336 * 299.99337 * 1 2 3 32 32 H 1.08998 * 109.46900 * 240.00540 * 2 1 3 33 33 H 1.09005 * 109.47310 * 60.00576 * 3 2 1 34 34 H 1.09000 * 109.46944 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47482 * 300.00371 * 3 2 1 36 36 H 1.08005 * 119.98879 * 0.02562 * 6 5 4 37 37 H 0.97003 * 120.00118 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.47055 * 294.96777 * 12 11 9 39 39 H 1.09000 * 109.46820 * 54.96516 * 12 11 9 40 40 H 1.09007 * 110.71693 * 336.74788 * 15 13 12 41 41 H 1.08998 * 110.72353 * 100.02178 * 15 13 12 42 42 H 1.08999 * 111.00470 * 153.56938 * 16 15 13 43 43 H 1.09000 * 111.00283 * 277.42504 * 16 15 13 44 44 H 1.09003 * 110.36684 * 81.82851 * 17 16 15 45 45 H 1.08997 * 110.36722 * 204.04354 * 17 16 15 46 46 H 0.97000 * 120.00341 * 180.02562 * 22 21 19 47 47 H 1.07997 * 120.01430 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.1971 -1.3120 1.0652 6 6 3.7238 -1.9854 2.1692 7 7 4.8774 -2.6097 2.0707 8 6 5.5486 -2.5908 0.9201 9 6 6.8484 -3.2880 0.8102 10 8 7.4602 -3.2708 -0.2400 11 7 7.3544 -3.9422 1.8743 12 6 8.6416 -4.6332 1.7651 13 6 9.0434 -5.1824 3.1354 14 1 8.2516 -5.8222 3.5249 15 6 9.3042 -4.0164 4.1123 16 6 10.5241 -4.5153 4.9310 17 6 11.3222 -5.2949 3.8563 18 7 10.2955 -5.9444 3.0211 19 6 10.4778 -7.0712 2.2646 20 1 9.6232 -7.6017 1.8714 21 6 11.7610 -7.5314 2.0030 22 7 12.8025 -6.8852 2.4824 23 14 12.0096 -9.0681 0.9704 24 1 10.6887 -9.6039 0.5541 25 1 12.8085 -8.7306 -0.2350 26 1 12.7294 -10.0912 1.7708 27 6 5.0248 -1.9139 -0.1801 28 7 3.8641 -1.2918 -0.0804 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.6766 1.9564 0.8901 34 1 3.1299 1.4426 0.0005 35 1 1.6765 1.9564 -0.8899 36 1 3.1817 -1.9975 3.1033 37 1 6.8663 -3.9556 2.7124 38 1 8.5533 -5.4559 1.0555 39 1 9.4013 -3.9333 1.4171 40 1 9.5519 -3.1052 3.5677 41 1 8.4432 -3.8572 4.7614 42 1 11.1045 -3.6773 5.3172 43 1 10.2088 -5.1755 5.7390 44 1 11.9209 -4.6092 3.2567 45 1 11.9605 -6.0431 4.3262 46 1 13.6992 -7.2066 2.2993 47 1 5.5679 -1.8983 -1.1134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027882895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:38 Heat of formation + Delta-G solvation = -26.786380 kcal Electronic energy + Delta-G solvation = -28182.612280 eV Core-core repulsion = 24172.715663 eV Total energy + Delta-G solvation = -4009.896617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.60847 -40.83670 -39.77015 -39.15029 -35.99376 -35.28942 -34.40936 -34.37591 -32.08505 -31.36606 -30.24467 -28.20346 -26.94693 -26.45583 -26.07769 -24.93443 -22.72010 -22.09748 -21.72551 -21.22103 -19.74703 -19.46975 -18.90386 -18.44370 -17.31530 -17.18711 -16.65494 -16.49655 -16.31685 -16.05324 -15.75108 -15.70094 -15.37133 -15.13241 -14.72144 -14.46924 -14.19938 -13.95050 -13.65831 -13.47506 -13.37694 -13.26149 -13.06004 -12.97778 -12.94545 -12.85355 -12.68565 -12.47748 -11.97980 -11.90704 -11.89412 -11.77142 -11.73036 -11.50964 -11.46290 -11.39822 -10.68697 -10.44892 -10.21900 -9.84848 -8.85995 -7.87849 -5.25400 -0.70530 -0.16284 1.44462 1.46547 1.55950 1.57724 1.62626 1.98220 2.49220 2.59049 2.79652 2.89955 3.26051 3.31802 3.66942 3.81579 3.85225 3.94414 3.97019 3.98906 4.03723 4.21483 4.26905 4.45163 4.45937 4.53717 4.58343 4.70355 4.73238 4.80514 4.86014 4.95240 5.00071 5.02926 5.14785 5.20155 5.20531 5.24741 5.31541 5.48122 5.55588 5.67379 5.79193 5.87005 5.88527 6.23304 6.31700 6.56385 7.07804 7.10212 7.76394 8.42405 9.23141 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023078 B = 0.002140 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.963759 B =13080.855213 C =13747.185369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 C -0.166 4.166 4 O -0.287 6.287 5 C 0.300 3.700 6 C 0.056 3.944 7 N -0.381 5.381 8 C -0.030 4.030 9 C 0.573 3.427 10 O -0.573 6.573 11 N -0.688 5.688 12 C 0.127 3.873 13 C 0.148 3.852 14 H 0.051 0.949 15 C -0.113 4.113 16 C -0.133 4.133 17 C 0.173 3.827 18 N -0.610 5.610 19 C -0.238 4.238 20 H 0.078 0.922 21 C -0.061 4.061 22 N -0.945 5.945 23 Si 0.972 3.028 24 H -0.267 1.267 25 H -0.295 1.295 26 H -0.289 1.289 27 C 0.158 3.842 28 N -0.507 5.507 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.219 0.781 37 H 0.419 0.581 38 H 0.041 0.959 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.071 0.929 44 H -0.008 1.008 45 H 0.038 0.962 46 H 0.247 0.753 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.264 16.623 0.712 31.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 C -0.224 4.224 4 O -0.192 6.192 5 C 0.116 3.884 6 C -0.113 4.113 7 N -0.098 5.098 8 C -0.167 4.167 9 C 0.358 3.642 10 O -0.452 6.452 11 N -0.339 5.339 12 C 0.001 3.999 13 C 0.041 3.959 14 H 0.069 0.931 15 C -0.151 4.151 16 C -0.172 4.172 17 C 0.048 3.952 18 N -0.334 5.334 19 C -0.367 4.367 20 H 0.096 0.904 21 C -0.255 4.255 22 N -0.593 5.593 23 Si 0.801 3.199 24 H -0.191 1.191 25 H -0.222 1.222 26 H -0.216 1.216 27 C 0.000 4.000 28 N -0.237 5.237 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.235 0.765 37 H 0.257 0.743 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.010 0.990 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -25.801 16.502 0.101 30.627 hybrid contribution 0.791 -0.908 -0.829 1.462 sum -25.010 15.593 -0.728 29.482 Atomic orbital electron populations 1.21928 0.90443 1.03515 1.04435 1.22755 0.96302 0.93022 0.86583 1.22217 1.01032 0.94999 1.04126 1.86326 1.29731 1.63095 1.40014 1.21540 0.86842 0.89001 0.91053 1.23531 0.92482 0.95553 0.99731 1.68340 1.05557 1.12759 1.23172 1.21583 0.97490 1.04697 0.92948 1.17859 0.84026 0.78624 0.83700 1.90801 1.61453 1.63166 1.29797 1.45712 1.22034 1.51551 1.14632 1.21816 0.83164 0.94783 1.00133 1.21317 0.89609 0.92755 0.92230 0.93089 1.22594 0.99211 0.96145 0.97146 1.22879 0.97130 0.99749 0.97414 1.21279 0.90339 0.93591 0.89951 1.44748 1.08238 1.27630 1.52797 1.19346 0.92198 1.00731 1.24414 0.90450 1.25687 0.95493 1.02549 1.01754 1.70143 0.97553 1.41879 1.49773 0.85105 0.77843 0.79038 0.77939 1.19134 1.22219 1.21591 1.23542 0.89324 0.87715 0.99430 1.68233 1.08787 1.21689 1.24974 0.88482 0.91832 0.90830 0.89961 0.91112 0.93699 0.89089 0.76503 0.74335 0.94106 0.93791 0.91748 0.87966 0.89919 0.91069 0.98978 0.94381 0.94316 0.79457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.56 71.98 0.69 -0.35 16 2 C 0.07 0.82 3.11 30.59 0.10 0.92 16 3 C -0.17 -1.74 9.53 71.98 0.69 -1.05 16 4 O -0.29 -4.29 9.76 -87.93 -0.86 -5.15 16 5 C 0.30 5.30 7.47 84.92 0.63 5.94 16 6 C 0.06 0.89 11.18 85.07 0.95 1.84 16 7 N -0.38 -8.04 9.70 -183.92 -1.78 -9.83 16 8 C -0.03 -0.76 6.74 41.77 0.28 -0.47 16 9 C 0.57 18.45 7.80 86.80 0.68 19.13 16 10 O -0.57 -22.64 16.33 -3.89 -0.06 -22.71 16 11 N -0.69 -21.32 5.33 -465.91 -2.48 -23.80 16 12 C 0.13 4.99 5.08 86.38 0.44 5.43 16 13 C 0.15 5.76 3.21 45.34 0.15 5.91 16 14 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 15 C -0.11 -3.53 6.14 31.78 0.20 -3.34 16 16 C -0.13 -4.66 7.09 31.99 0.23 -4.43 16 17 C 0.17 8.47 5.42 86.86 0.47 8.95 16 18 N -0.61 -30.75 3.13 -668.25 -2.09 -32.84 16 19 C -0.24 -13.29 9.75 84.03 0.82 -12.47 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.06 -3.52 5.47 84.86 0.46 -3.05 16 22 N -0.95 -57.28 10.56 21.65 0.23 -57.06 16 23 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 27 C 0.16 3.61 10.76 84.94 0.91 4.52 16 28 N -0.51 -10.34 8.80 -307.09 -2.70 -13.04 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 1.16 6.99 -2.39 -0.02 1.14 16 33 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.42 10.69 7.70 -92.71 -0.71 9.97 16 38 H 0.04 1.83 7.90 -2.39 -0.02 1.81 16 39 H 0.04 1.94 8.06 -2.39 -0.02 1.92 16 40 H 0.06 2.02 7.80 -2.38 -0.02 2.01 16 41 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H -0.01 -0.43 8.07 -2.39 -0.02 -0.45 16 45 H 0.04 2.10 6.90 -2.39 -0.02 2.08 16 46 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 47 H 0.19 4.08 7.64 -2.91 -0.02 4.06 16 Total: -1.00 -71.98 389.46 0.23 -71.75 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.26 Total: 16.52 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: 7.69 Total: 27.46 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -8.83 Total: -136.56 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.92 Total: -27.85 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -71.98 0.23 -71.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027882895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.968 kcal (2) G-P(sol) polarization free energy of solvation -71.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds