Wall clock time and date at job start Tue Mar 31 2020 18:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47211 * 2 1 4 4 O 1.42902 * 109.46996 * 120.00231 * 2 1 3 5 5 C 1.35478 * 116.99884 * 149.99930 * 4 2 1 6 6 C 1.39637 * 119.97622 * 179.72462 * 5 4 2 7 7 N 1.31525 * 120.04120 * 179.75271 * 6 5 4 8 8 C 1.33223 * 119.98803 * 0.52023 * 7 6 5 9 9 C 1.47904 * 120.02254 * 179.75247 * 8 7 6 10 10 O 1.21551 * 119.99444 * 179.97438 * 9 8 7 11 11 N 1.34771 * 119.99879 * 359.97438 * 9 8 7 12 12 C 1.46510 * 119.99406 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46560 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.88672 * 51.12632 * 13 12 11 15 15 C 1.55154 * 110.99997 * 174.99840 * 13 12 11 16 16 C 1.54320 * 102.94391 * 153.57716 * 15 13 12 17 17 N 1.47023 * 107.26919 * 337.81185 * 16 15 13 18 18 C 1.36937 * 125.64962 * 178.92310 * 17 16 15 19 19 H 1.07997 * 120.00067 * 174.87007 * 18 17 16 20 20 C 1.38815 * 119.99921 * 354.86106 * 18 17 16 21 21 N 1.31618 * 119.99803 * 7.07330 * 20 18 17 22 22 Si 1.86803 * 119.99940 * 187.06276 * 20 18 17 23 23 H 1.48508 * 109.46808 * 94.99221 * 22 20 18 24 24 H 1.48493 * 109.47071 * 214.98918 * 22 20 18 25 25 H 1.48496 * 109.47409 * 334.99418 * 22 20 18 26 26 C 1.47421 * 108.70445 * 358.93432 * 17 16 15 27 27 C 1.39396 * 119.94699 * 359.73481 * 8 7 6 28 28 N 1.32070 * 119.96548 * 359.97438 * 27 8 7 29 29 H 1.09004 * 109.47017 * 59.99874 * 1 2 3 30 30 H 1.08999 * 109.47432 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47295 * 300.00256 * 1 2 3 32 32 H 1.09003 * 109.46721 * 240.00237 * 2 1 3 33 33 H 1.09001 * 109.47200 * 59.99685 * 3 2 1 34 34 H 1.08998 * 109.47328 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47233 * 299.99993 * 3 2 1 36 36 H 1.08002 * 119.97767 * 0.02562 * 6 5 4 37 37 H 0.97000 * 120.00297 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.47307 * 299.99611 * 12 11 9 39 39 H 1.08995 * 109.47023 * 60.00426 * 12 11 9 40 40 H 1.09004 * 110.72323 * 271.93975 * 15 13 12 41 41 H 1.08999 * 110.72261 * 35.03675 * 15 13 12 42 42 H 1.09006 * 109.88261 * 97.22205 * 16 15 13 43 43 H 1.08999 * 109.88665 * 218.39231 * 16 15 13 44 44 H 0.97001 * 119.99910 * 179.97438 * 21 20 18 45 45 H 1.08997 * 110.37167 * 265.29710 * 26 17 16 46 46 H 1.09003 * 110.37005 * 142.97106 * 26 17 16 47 47 H 1.07999 * 120.01058 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1970 -1.3121 1.0654 6 6 3.7237 -1.9856 2.1693 7 7 4.8772 -2.6099 2.0709 8 6 5.5485 -2.5911 0.9204 9 6 6.8482 -3.2883 0.8105 10 8 7.4601 -3.2712 -0.2397 11 7 7.3541 -3.9425 1.8746 12 6 8.6414 -4.6336 1.7655 13 6 8.9832 -5.2893 3.1050 14 1 8.1509 -5.8937 3.4655 15 6 10.2786 -6.1361 2.9949 16 6 10.8223 -6.1255 4.4392 17 7 10.2453 -4.9538 5.1141 18 6 10.4620 -4.5969 6.4183 19 1 10.0576 -3.6707 6.7991 20 6 11.2012 -5.4258 7.2510 21 7 11.8103 -6.4822 6.7557 22 14 11.3318 -5.0416 9.0744 23 1 10.2990 -5.8080 9.8170 24 1 12.6801 -5.4238 9.5655 25 1 11.1200 -3.5878 9.2905 26 6 9.3945 -4.2267 4.1545 27 6 5.0247 -1.9142 -0.1799 28 7 3.8636 -1.2928 -0.0806 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.1815 -1.9976 3.1033 37 1 6.8660 -3.9558 2.7128 38 1 8.5786 -5.3985 0.9916 39 1 9.4183 -3.9152 1.5042 40 1 10.0487 -7.1531 2.6769 41 1 10.9870 -5.6702 2.3099 42 1 10.5203 -7.0368 4.9556 43 1 11.9094 -6.0475 4.4255 44 1 12.3272 -7.0612 7.3375 45 1 9.9585 -3.4236 3.6802 46 1 8.5128 -3.8275 4.6557 47 1 5.5679 -1.8986 -1.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028539126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:42 Heat of formation + Delta-G solvation = -4.152047 kcal Electronic energy + Delta-G solvation = -27815.826217 eV Core-core repulsion = 23806.911099 eV Total energy + Delta-G solvation = -4008.915118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.82512 -39.86882 -38.88989 -37.59583 -34.97760 -34.41915 -33.85727 -32.48854 -31.16904 -29.73623 -28.28753 -27.79427 -25.97180 -25.48610 -24.78498 -23.37525 -22.06688 -20.97814 -19.97641 -19.90498 -19.07801 -18.39752 -17.87687 -16.76902 -16.51265 -15.92745 -15.66858 -15.40050 -15.29228 -14.87984 -14.76241 -14.58061 -14.11393 -13.95554 -13.63063 -13.33540 -13.13488 -12.93113 -12.84191 -12.54664 -12.32419 -12.21330 -12.02428 -11.79839 -11.73461 -11.37789 -11.34373 -11.23231 -10.88479 -10.79432 -10.59735 -10.26096 -10.09077 -9.96471 -9.83781 -9.66123 -9.56641 -9.24010 -8.93223 -8.55989 -6.80928 -5.70880 -3.02902 0.12054 0.59981 2.29275 2.53064 3.01275 3.41237 3.45491 3.46472 3.48496 3.53631 3.72850 4.02197 4.32125 4.41732 4.50997 4.61358 4.69294 4.76465 5.03815 5.08614 5.12130 5.16177 5.22756 5.23699 5.28433 5.45757 5.54667 5.55204 5.64543 5.68649 5.70843 5.90671 6.03033 6.07253 6.35893 6.38732 6.53447 6.55000 6.55508 6.65468 6.70963 6.93291 7.15102 7.52377 7.57686 7.65603 7.84359 8.09383 8.27808 9.23712 9.84353 10.50931 11.41326 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.002048 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.391778 B =13671.775810 C =14900.588067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 C -0.170 4.170 4 O -0.289 6.289 5 C 0.298 3.702 6 C 0.046 3.954 7 N -0.374 5.374 8 C -0.017 4.017 9 C 0.577 3.423 10 O -0.538 6.538 11 N -0.701 5.701 12 C 0.130 3.870 13 C -0.118 4.118 14 H 0.081 0.919 15 C -0.134 4.134 16 C 0.176 3.824 17 N -0.606 5.606 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.142 3.858 27 C 0.158 3.842 28 N -0.503 5.503 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.185 0.815 37 H 0.412 0.588 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.252 0.748 45 H 0.019 0.981 46 H 0.038 0.962 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.630 10.861 -15.747 28.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.228 4.228 4 O -0.193 6.193 5 C 0.114 3.886 6 C -0.121 4.121 7 N -0.091 5.091 8 C -0.156 4.156 9 C 0.361 3.639 10 O -0.415 6.415 11 N -0.352 5.352 12 C 0.007 3.993 13 C -0.138 4.138 14 H 0.099 0.901 15 C -0.173 4.173 16 C 0.052 3.948 17 N -0.332 5.332 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.015 3.985 27 C -0.001 4.001 28 N -0.232 5.232 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.201 0.799 37 H 0.248 0.752 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.056 0.944 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -21.209 10.803 -16.102 28.737 hybrid contribution -0.132 0.268 1.241 1.277 sum -21.342 11.072 -14.861 28.265 Atomic orbital electron populations 1.21921 0.92297 1.03269 1.03330 1.22523 0.94914 0.92964 0.87514 1.22233 1.02220 0.95267 1.03031 1.86315 1.30509 1.63348 1.39159 1.21302 0.86692 0.89457 0.91154 1.23001 0.93301 0.97000 0.98788 1.68391 1.04753 1.12260 1.23703 1.22023 0.98244 1.03571 0.91797 1.17437 0.83336 0.78905 0.84235 1.90805 1.60224 1.61941 1.28514 1.45936 1.22858 1.51984 1.14382 1.21515 0.83724 0.95968 0.98079 1.22619 0.98981 0.98451 0.93708 0.90077 1.22853 0.95415 0.98418 1.00631 1.21157 0.96693 0.90945 0.86050 1.44481 1.53299 1.27383 1.08081 1.19061 1.28677 1.03581 0.84351 0.90463 1.24826 1.00010 0.97408 0.98221 1.69979 1.36271 1.16948 1.33547 0.86121 0.77013 0.77555 0.85240 1.21633 1.21805 1.20657 1.21591 0.93739 0.92966 0.90176 1.23533 0.89119 0.87939 0.99546 1.68197 1.09082 1.21551 1.24327 0.90192 0.91632 0.91352 0.89009 0.91668 0.91925 0.90706 0.79854 0.75167 0.91270 0.90957 0.91966 0.92167 0.93401 0.94073 0.93782 0.96365 0.94421 0.79628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.56 37.16 0.36 -0.34 16 2 C 0.08 0.51 3.11 -26.73 -0.08 0.43 16 3 C -0.17 -1.01 9.53 37.15 0.35 -0.66 16 4 O -0.29 -2.44 9.76 -18.13 -0.18 -2.62 16 5 C 0.30 2.83 7.47 -16.70 -0.12 2.70 16 6 C 0.05 0.43 11.18 -17.16 -0.19 0.24 16 7 N -0.37 -4.19 9.70 -9.48 -0.09 -4.28 16 8 C -0.02 -0.21 6.74 -82.88 -0.56 -0.76 16 9 C 0.58 7.94 7.80 -12.30 -0.10 7.84 16 10 O -0.54 -8.58 16.33 5.32 0.09 -8.49 16 11 N -0.70 -9.44 5.49 -61.23 -0.34 -9.78 16 12 C 0.13 1.87 5.13 -4.03 -0.02 1.85 16 13 C -0.12 -1.96 3.05 -88.47 -0.27 -2.23 16 14 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 15 C -0.13 -2.43 6.42 -24.90 -0.16 -2.59 16 16 C 0.18 4.25 5.38 -3.07 -0.02 4.24 16 17 N -0.61 -15.46 3.39 -170.08 -0.58 -16.04 16 18 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 19 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 20 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 21 N -0.92 -27.13 10.36 55.49 0.57 -26.55 16 22 Si 0.91 22.19 29.56 -169.99 -5.02 17.16 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.14 2.87 6.65 -2.53 -0.02 2.85 16 27 C 0.16 1.64 10.76 -17.02 -0.18 1.46 16 28 N -0.50 -5.03 8.80 -12.76 -0.11 -5.14 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.66 6.99 -51.93 -0.36 0.30 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.41 5.27 7.81 -40.82 -0.32 4.95 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.09 7.96 -51.93 -0.41 0.68 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 42 H 0.05 1.27 7.30 -51.93 -0.38 0.90 16 43 H 0.04 1.10 7.61 -51.93 -0.40 0.71 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.19 1.68 7.64 -52.49 -0.40 1.28 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -32.48 390.14 -8.34 -40.81 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.29 Total: 0.89 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -1.26 Total: 8.15 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -0.54 Total: -61.78 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.09 Total: -11.11 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.48 -8.34 -40.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028539126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.659 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds