Wall clock time and date at job start Tue Mar 31 2020 18:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47211 * 2 1 4 4 O 1.42902 * 109.46996 * 120.00231 * 2 1 3 5 5 C 1.35478 * 116.99884 * 149.99930 * 4 2 1 6 6 C 1.39637 * 119.97622 * 179.72462 * 5 4 2 7 7 N 1.31525 * 120.04120 * 179.75271 * 6 5 4 8 8 C 1.33223 * 119.98803 * 0.52023 * 7 6 5 9 9 C 1.47904 * 120.02254 * 179.75247 * 8 7 6 10 10 O 1.21551 * 119.99444 * 179.97438 * 9 8 7 11 11 N 1.34771 * 119.99879 * 359.97438 * 9 8 7 12 12 C 1.46510 * 119.99406 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46560 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.88672 * 51.12632 * 13 12 11 15 15 C 1.55154 * 110.99997 * 174.99840 * 13 12 11 16 16 C 1.54320 * 102.94391 * 153.57716 * 15 13 12 17 17 N 1.47023 * 107.26919 * 337.81185 * 16 15 13 18 18 C 1.36937 * 125.64962 * 178.92310 * 17 16 15 19 19 H 1.07997 * 120.00067 * 174.87007 * 18 17 16 20 20 C 1.38815 * 119.99921 * 354.86106 * 18 17 16 21 21 N 1.31618 * 119.99803 * 7.07330 * 20 18 17 22 22 Si 1.86803 * 119.99940 * 187.06276 * 20 18 17 23 23 H 1.48508 * 109.46808 * 94.99221 * 22 20 18 24 24 H 1.48493 * 109.47071 * 214.98918 * 22 20 18 25 25 H 1.48496 * 109.47409 * 334.99418 * 22 20 18 26 26 C 1.47421 * 108.70445 * 358.93432 * 17 16 15 27 27 C 1.39396 * 119.94699 * 359.73481 * 8 7 6 28 28 N 1.32070 * 119.96548 * 359.97438 * 27 8 7 29 29 H 1.09004 * 109.47017 * 59.99874 * 1 2 3 30 30 H 1.08999 * 109.47432 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47295 * 300.00256 * 1 2 3 32 32 H 1.09003 * 109.46721 * 240.00237 * 2 1 3 33 33 H 1.09001 * 109.47200 * 59.99685 * 3 2 1 34 34 H 1.08998 * 109.47328 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47233 * 299.99993 * 3 2 1 36 36 H 1.08002 * 119.97767 * 0.02562 * 6 5 4 37 37 H 0.97000 * 120.00297 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.47307 * 299.99611 * 12 11 9 39 39 H 1.08995 * 109.47023 * 60.00426 * 12 11 9 40 40 H 1.09004 * 110.72323 * 271.93975 * 15 13 12 41 41 H 1.08999 * 110.72261 * 35.03675 * 15 13 12 42 42 H 1.09006 * 109.88261 * 97.22205 * 16 15 13 43 43 H 1.08999 * 109.88665 * 218.39231 * 16 15 13 44 44 H 0.97001 * 119.99910 * 179.97438 * 21 20 18 45 45 H 1.08997 * 110.37167 * 265.29710 * 26 17 16 46 46 H 1.09003 * 110.37005 * 142.97106 * 26 17 16 47 47 H 1.07999 * 120.01058 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1970 -1.3121 1.0654 6 6 3.7237 -1.9856 2.1693 7 7 4.8772 -2.6099 2.0709 8 6 5.5485 -2.5911 0.9204 9 6 6.8482 -3.2883 0.8105 10 8 7.4601 -3.2712 -0.2397 11 7 7.3541 -3.9425 1.8746 12 6 8.6414 -4.6336 1.7655 13 6 8.9832 -5.2893 3.1050 14 1 8.1509 -5.8937 3.4655 15 6 10.2786 -6.1361 2.9949 16 6 10.8223 -6.1255 4.4392 17 7 10.2453 -4.9538 5.1141 18 6 10.4620 -4.5969 6.4183 19 1 10.0576 -3.6707 6.7991 20 6 11.2012 -5.4258 7.2510 21 7 11.8103 -6.4822 6.7557 22 14 11.3318 -5.0416 9.0744 23 1 10.2990 -5.8080 9.8170 24 1 12.6801 -5.4238 9.5655 25 1 11.1200 -3.5878 9.2905 26 6 9.3945 -4.2267 4.1545 27 6 5.0247 -1.9142 -0.1799 28 7 3.8636 -1.2928 -0.0806 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.1815 -1.9976 3.1033 37 1 6.8660 -3.9558 2.7128 38 1 8.5786 -5.3985 0.9916 39 1 9.4183 -3.9152 1.5042 40 1 10.0487 -7.1531 2.6769 41 1 10.9870 -5.6702 2.3099 42 1 10.5203 -7.0368 4.9556 43 1 11.9094 -6.0475 4.4255 44 1 12.3272 -7.0612 7.3375 45 1 9.9585 -3.4236 3.6802 46 1 8.5128 -3.8275 4.6557 47 1 5.5679 -1.8986 -1.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028539126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:41 Heat of formation + Delta-G solvation = -27.483584 kcal Electronic energy + Delta-G solvation = -27816.837948 eV Core-core repulsion = 23806.911099 eV Total energy + Delta-G solvation = -4009.926850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.60263 -40.82358 -39.75897 -39.13862 -36.17242 -35.40711 -34.41020 -34.25824 -32.12319 -31.41566 -29.86649 -28.21204 -27.43402 -26.45156 -25.97123 -24.76136 -22.73092 -22.15808 -21.63246 -21.30268 -19.74485 -19.35111 -18.88735 -18.61930 -17.27469 -17.09140 -16.79718 -16.59059 -16.25822 -16.04081 -15.87620 -15.62682 -15.40436 -15.03393 -14.75172 -14.48534 -14.18361 -13.94844 -13.82856 -13.47456 -13.40653 -13.26216 -13.06442 -12.99969 -12.94329 -12.75681 -12.63886 -12.47896 -12.00599 -11.94511 -11.90548 -11.85510 -11.77433 -11.55000 -11.46976 -11.38415 -10.67334 -10.42913 -10.21051 -9.84461 -8.87833 -7.85186 -5.19184 -0.69825 -0.16301 1.46328 1.48133 1.57027 1.57903 1.62975 2.01075 2.50315 2.59873 2.80353 2.91349 3.26643 3.32567 3.62396 3.72511 3.82828 3.87599 3.94996 4.01230 4.03979 4.07063 4.20955 4.45286 4.46306 4.56876 4.64632 4.69499 4.72425 4.79876 4.82296 4.85458 4.93751 5.02087 5.06748 5.10518 5.20147 5.24167 5.30275 5.45178 5.48398 5.69830 5.79707 5.87623 5.89239 6.21629 6.30541 6.54315 7.04304 7.11719 7.79475 8.44240 9.25772 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.002048 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.391778 B =13671.775810 C =14900.588067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 C -0.167 4.167 4 O -0.290 6.290 5 C 0.301 3.699 6 C 0.050 3.950 7 N -0.385 5.385 8 C -0.035 4.035 9 C 0.580 3.420 10 O -0.563 6.563 11 N -0.700 5.700 12 C 0.142 3.858 13 C -0.096 4.096 14 H 0.088 0.912 15 C -0.121 4.121 16 C 0.181 3.819 17 N -0.629 5.629 18 C -0.242 4.242 19 H 0.081 0.919 20 C -0.067 4.067 21 N -0.950 5.950 22 Si 0.977 3.023 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.137 3.863 27 C 0.161 3.839 28 N -0.507 5.507 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.211 0.789 37 H 0.416 0.584 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.014 0.986 43 H 0.003 0.997 44 H 0.246 0.754 45 H 0.019 0.981 46 H 0.045 0.955 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.913 11.997 -16.342 31.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 C -0.224 4.224 4 O -0.194 6.194 5 C 0.116 3.884 6 C -0.119 4.119 7 N -0.103 5.103 8 C -0.172 4.172 9 C 0.365 3.635 10 O -0.442 6.442 11 N -0.350 5.350 12 C 0.019 3.981 13 C -0.116 4.116 14 H 0.106 0.894 15 C -0.160 4.160 16 C 0.056 3.944 17 N -0.355 5.355 18 C -0.371 4.371 19 H 0.099 0.901 20 C -0.260 4.260 21 N -0.599 5.599 22 Si 0.806 3.194 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.193 1.193 26 C 0.012 3.988 27 C 0.002 3.998 28 N -0.237 5.237 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.228 0.772 37 H 0.253 0.747 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.033 0.967 43 H 0.021 0.979 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.063 0.937 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -23.521 11.965 -16.718 31.239 hybrid contribution 0.474 0.016 1.409 1.486 sum -23.048 11.981 -15.309 30.151 Atomic orbital electron populations 1.21934 0.90524 1.03519 1.04396 1.22764 0.96253 0.92992 0.86590 1.22219 1.01058 0.95052 1.04083 1.86330 1.29843 1.63099 1.40148 1.21482 0.86844 0.88977 0.91054 1.23433 0.92701 0.96022 0.99696 1.68353 1.05488 1.12875 1.23551 1.21754 0.97932 1.04839 0.92698 1.17632 0.83751 0.78458 0.83672 1.90786 1.61157 1.62927 1.29362 1.45862 1.22514 1.51951 1.14656 1.21307 0.84088 0.96109 0.96639 1.22415 0.98362 0.96966 0.93814 0.89362 1.22714 0.96119 1.00521 0.96613 1.20944 0.94676 0.89370 0.89386 1.44810 1.54240 1.28173 1.08284 1.19453 1.28129 1.03717 0.85848 0.90085 1.25679 1.00226 0.97655 1.02488 1.70200 1.37104 1.17943 1.34605 0.85072 0.76481 0.77919 0.79954 1.21284 1.22262 1.19284 1.21762 0.93133 0.93641 0.90233 1.23641 0.89171 0.87423 0.99531 1.68245 1.08991 1.21695 1.24729 0.88365 0.91795 0.91046 0.89673 0.91360 0.93641 0.88954 0.77244 0.74705 0.89867 0.91494 0.89478 0.90749 0.96748 0.97899 0.94424 0.96345 0.93713 0.78775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.56 71.98 0.69 -0.33 16 2 C 0.07 0.80 3.11 30.59 0.10 0.90 16 3 C -0.17 -1.71 9.53 71.98 0.69 -1.02 16 4 O -0.29 -4.39 9.76 -87.77 -0.86 -5.25 16 5 C 0.30 5.24 7.47 84.92 0.63 5.88 16 6 C 0.05 0.83 11.18 85.08 0.95 1.78 16 7 N -0.39 -8.07 9.70 -183.91 -1.78 -9.85 16 8 C -0.03 -0.78 6.74 41.77 0.28 -0.50 16 9 C 0.58 15.30 7.80 86.80 0.68 15.98 16 10 O -0.56 -17.42 16.33 -3.88 -0.06 -17.49 16 11 N -0.70 -17.72 5.49 -465.90 -2.56 -20.28 16 12 C 0.14 3.79 5.13 86.38 0.44 4.23 16 13 C -0.10 -3.03 3.05 -9.40 -0.03 -3.06 16 14 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 15 C -0.12 -4.23 6.42 31.78 0.20 -4.03 16 16 C 0.18 8.96 5.38 86.73 0.47 9.43 16 17 N -0.63 -32.44 3.39 -692.00 -2.35 -34.79 16 18 C -0.24 -13.74 10.27 84.03 0.86 -12.87 16 19 H 0.08 4.40 7.84 -2.91 -0.02 4.37 16 20 C -0.07 -3.89 5.48 84.86 0.46 -3.42 16 21 N -0.95 -57.77 10.36 21.65 0.22 -57.55 16 22 Si 0.98 46.17 29.56 68.60 2.03 48.20 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 C 0.14 5.47 6.65 86.85 0.58 6.04 16 27 C 0.16 3.20 10.76 84.94 0.91 4.12 16 28 N -0.51 -9.55 8.80 -307.09 -2.70 -12.25 16 29 H 0.10 0.33 8.14 -2.38 -0.02 0.32 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 1.11 6.99 -2.39 -0.02 1.09 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.42 9.95 7.81 -92.71 -0.72 9.23 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 1.90 7.96 -2.39 -0.02 1.88 16 40 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 42 H 0.01 0.79 7.30 -2.38 -0.02 0.77 16 43 H 0.00 0.15 7.61 -2.39 -0.02 0.14 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.02 0.75 7.90 -2.39 -0.02 0.73 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.20 3.38 7.64 -2.91 -0.02 3.36 16 Total: -1.00 -71.36 390.14 0.11 -71.24 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.25 Total: 14.89 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 7.92 Total: 23.12 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -9.17 Total: -134.72 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.92 Total: -22.74 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -71.36 0.11 -71.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028539126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.761 kcal (2) G-P(sol) polarization free energy of solvation -71.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds