Wall clock time and date at job start Tue Mar 31 2020 18:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 O 1.42895 * 109.47000 * 120.00395 * 2 1 3 5 5 C 1.35486 * 117.00463 * 90.00175 * 4 2 1 6 6 C 1.39628 * 119.97779 * 179.72406 * 5 4 2 7 7 N 1.31538 * 120.03718 * 179.70350 * 6 5 4 8 8 C 1.33217 * 119.98752 * 0.56882 * 7 6 5 9 9 C 1.47898 * 120.02503 * 179.72540 * 8 7 6 10 10 O 1.21551 * 120.00064 * 179.97438 * 9 8 7 11 11 N 1.34783 * 120.00041 * 359.97438 * 9 8 7 12 12 C 1.46494 * 120.00019 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47082 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.64028 * 305.70418 * 13 12 11 15 15 C 1.55157 * 110.72195 * 182.56347 * 13 12 11 16 16 C 1.54909 * 101.58044 * 206.13370 * 15 13 12 17 17 N 1.47423 * 104.83567 * 37.00834 * 16 15 13 18 18 C 1.36936 * 125.65014 * 155.90164 * 17 16 15 19 19 H 1.08005 * 119.99945 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99983 * 359.97438 * 18 17 16 21 21 N 1.31615 * 120.00271 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99825 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47556 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47257 * 119.99825 * 22 20 18 25 25 H 1.48505 * 109.47206 * 239.99898 * 22 20 18 26 26 C 1.47321 * 108.73331 * 335.71407 * 17 16 15 27 27 C 1.39395 * 119.95061 * 359.70417 * 8 7 6 28 28 N 1.32079 * 119.95992 * 0.02562 * 27 8 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 33 33 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 34 34 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 36 36 H 1.07993 * 119.98373 * 359.97438 * 6 5 4 37 37 H 0.97006 * 119.99555 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47438 * 300.00170 * 12 11 9 39 39 H 1.09006 * 109.47144 * 60.00191 * 12 11 9 40 40 H 1.08999 * 111.00360 * 324.20666 * 15 13 12 41 41 H 1.08999 * 111.00645 * 88.01812 * 15 13 12 42 42 H 1.09008 * 110.36758 * 155.84348 * 16 15 13 43 43 H 1.08998 * 110.36755 * 278.05495 * 16 15 13 44 44 H 0.96993 * 120.00101 * 180.02562 * 21 20 18 45 45 H 1.09000 * 110.06540 * 241.86902 * 26 17 16 46 46 H 1.08999 * 109.84730 * 120.61074 * 26 17 16 47 47 H 1.07997 * 120.01501 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2114 -2.0091 1.0653 6 6 2.6817 -2.7283 2.1659 7 7 2.8757 -4.0258 2.0705 8 6 2.6342 -4.6523 0.9200 9 6 2.8578 -6.1101 0.8100 10 8 2.6368 -6.6814 -0.2398 11 7 3.3066 -6.8052 1.8740 12 6 3.5275 -8.2493 1.7653 13 6 4.0328 -8.7902 3.1043 14 1 4.9150 -8.2405 3.4325 15 6 4.3380 -10.3081 3.0034 16 6 4.1505 -10.7614 4.4727 17 7 3.0189 -9.9601 4.9735 18 6 2.1967 -10.3029 6.0135 19 1 1.3920 -9.6443 6.3054 20 6 2.3973 -11.4968 6.6925 21 7 3.3776 -12.2997 6.3365 22 14 1.2761 -11.9640 8.1115 23 1 0.2604 -10.8993 8.3113 24 1 0.5948 -13.2469 7.8025 25 1 2.0819 -12.1172 9.3495 26 6 2.9214 -8.7271 4.1732 27 6 2.1701 -3.9329 -0.1801 28 7 1.9709 -2.6310 -0.0806 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 2.8821 -2.2197 3.0973 37 1 3.4832 -6.3492 2.7118 38 1 2.5905 -8.7418 1.5053 39 1 4.2686 -8.4462 0.9905 40 1 3.6253 -10.8070 2.3466 41 1 5.3610 -10.4796 2.6684 42 1 3.9107 -11.8239 4.5143 43 1 5.0504 -10.5535 5.0516 44 1 3.5176 -13.1341 6.8107 45 1 3.0689 -7.8550 4.8103 46 1 1.9455 -8.6754 3.6905 47 1 1.9744 -4.4397 -1.1135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028539127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:45 Heat of formation + Delta-G solvation = -2.833989 kcal Electronic energy + Delta-G solvation = -27835.452184 eV Core-core repulsion = 23826.594221 eV Total energy + Delta-G solvation = -4008.857963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.82533 -39.86904 -38.89221 -37.58535 -34.97171 -34.41739 -33.85720 -32.49565 -31.16561 -29.73171 -28.25153 -27.79366 -25.97124 -25.49259 -24.80150 -23.36495 -22.06874 -21.00727 -20.07176 -19.72709 -19.07703 -18.40072 -17.86328 -16.81081 -16.51321 -15.89652 -15.72152 -15.38870 -15.27704 -14.92668 -14.79202 -14.60631 -14.14950 -13.91900 -13.63702 -13.37515 -13.05644 -12.86720 -12.78316 -12.52480 -12.48420 -12.21765 -11.80437 -11.76816 -11.68144 -11.48681 -11.34299 -11.23438 -10.93371 -10.81042 -10.58180 -10.30503 -10.08272 -9.98830 -9.80905 -9.62403 -9.47109 -9.23959 -8.93025 -8.63931 -6.81572 -5.64001 -3.05341 0.12163 0.59810 2.29189 2.53470 3.01725 3.40694 3.45686 3.46222 3.48701 3.53691 3.72738 4.02197 4.32140 4.41701 4.49802 4.61456 4.69304 4.76512 5.03856 5.08558 5.12718 5.16490 5.22815 5.26916 5.28515 5.42459 5.54003 5.54668 5.64730 5.69341 5.71132 5.89669 6.06124 6.11116 6.36158 6.39473 6.54879 6.58252 6.60065 6.65731 6.74206 6.92914 7.15022 7.52425 7.53401 7.64619 7.87126 8.10005 8.37945 9.23878 9.84556 10.49570 11.40083 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.002010 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.547162 B =13930.145068 C =14878.956909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 C -0.151 4.151 4 O -0.289 6.289 5 C 0.298 3.702 6 C 0.046 3.954 7 N -0.374 5.374 8 C -0.017 4.017 9 C 0.577 3.423 10 O -0.537 6.537 11 N -0.702 5.702 12 C 0.130 3.870 13 C -0.115 4.115 14 H 0.077 0.923 15 C -0.135 4.135 16 C 0.152 3.848 17 N -0.605 5.605 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.140 3.860 27 C 0.158 3.842 28 N -0.502 5.502 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.184 0.816 37 H 0.412 0.588 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.012 0.988 44 H 0.251 0.749 45 H 0.020 0.980 46 H 0.025 0.975 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 24.979 -14.377 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.021 3.979 3 C -0.208 4.208 4 O -0.193 6.193 5 C 0.114 3.886 6 C -0.121 4.121 7 N -0.091 5.091 8 C -0.156 4.156 9 C 0.361 3.639 10 O -0.414 6.414 11 N -0.352 5.352 12 C 0.007 3.993 13 C -0.134 4.134 14 H 0.095 0.905 15 C -0.174 4.174 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.349 4.349 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.014 3.986 27 C -0.001 4.001 28 N -0.231 5.231 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.201 0.799 37 H 0.248 0.752 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.125 0.875 43 H 0.030 0.970 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.043 0.957 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.706 24.550 -14.764 28.657 hybrid contribution -0.545 0.127 1.043 1.184 sum -1.251 24.677 -13.721 28.263 Atomic orbital electron populations 1.22235 0.94362 1.03133 1.03028 1.22523 0.94805 0.93077 0.87509 1.21919 1.02138 0.93420 1.03332 1.86313 1.78950 1.14918 1.39163 1.21297 0.90214 0.85956 0.91143 1.22994 1.00970 0.89312 0.98841 1.68389 1.08722 1.08379 1.23648 1.22022 1.05319 0.96494 0.91766 1.17441 0.77888 0.84361 0.84250 1.90807 1.52420 1.69646 1.28533 1.45940 1.65128 1.09748 1.14388 1.21568 1.01407 0.78306 0.97989 1.22451 0.99142 0.98163 0.93660 0.90470 1.23005 1.00040 0.92903 1.01441 1.21929 0.89103 0.99707 0.86568 1.44584 1.34150 1.17890 1.36461 1.19131 1.07542 1.02457 1.05755 0.90490 1.24788 0.98757 0.97308 0.99983 1.69801 1.32172 1.12566 1.42589 0.85998 0.79643 0.78078 0.81785 1.20561 1.21756 1.21792 1.21393 0.95057 0.90582 0.91537 1.23538 0.89261 0.87732 0.99585 1.68198 1.19742 1.10953 1.24250 0.91665 0.90710 0.91918 0.89012 0.91355 0.91637 0.90189 0.79869 0.75233 0.90854 0.91256 0.91795 0.92083 0.87512 0.97015 0.93804 0.96182 0.95741 0.79614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 9.53 37.16 0.35 -0.67 16 2 C 0.08 0.51 3.11 -26.73 -0.08 0.43 16 3 C -0.15 -0.69 9.56 37.16 0.36 -0.33 16 4 O -0.29 -2.44 9.76 -18.15 -0.18 -2.62 16 5 C 0.30 2.84 7.47 -16.71 -0.12 2.71 16 6 C 0.05 0.43 11.18 -17.16 -0.19 0.24 16 7 N -0.37 -4.20 9.70 -9.49 -0.09 -4.29 16 8 C -0.02 -0.20 6.74 -82.88 -0.56 -0.76 16 9 C 0.58 8.07 7.80 -12.30 -0.10 7.97 16 10 O -0.54 -8.72 16.33 5.32 0.09 -8.63 16 11 N -0.70 -9.60 5.42 -61.23 -0.33 -9.93 16 12 C 0.13 1.92 5.00 -4.05 -0.02 1.90 16 13 C -0.11 -1.92 2.98 -88.79 -0.26 -2.18 16 14 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.13 -2.48 6.54 -24.58 -0.16 -2.64 16 16 C 0.15 3.66 5.89 -2.53 -0.01 3.65 16 17 N -0.60 -15.52 3.40 -169.83 -0.58 -16.10 16 18 C -0.22 -6.19 10.28 -15.06 -0.15 -6.35 16 19 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 21 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 22 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.14 2.88 6.67 -2.90 -0.02 2.86 16 27 C 0.16 1.66 10.76 -17.01 -0.18 1.48 16 28 N -0.50 -5.06 8.80 -12.76 -0.11 -5.18 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.67 6.99 -51.93 -0.36 0.30 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.41 5.29 7.74 -40.82 -0.32 4.97 16 38 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.11 2.91 5.87 -51.92 -0.30 2.60 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.51 7.73 -51.93 -0.40 0.11 16 47 H 0.19 1.71 7.64 -52.49 -0.40 1.31 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -32.29 389.16 -8.30 -40.59 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.24 Total: 1.67 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -1.26 Total: 7.83 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.55 Total: -61.90 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.09 Total: -11.26 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.29 -8.30 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028539127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.753 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds