Wall clock time and date at job start Tue Mar 31 2020 18:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 O 1.42895 * 109.47000 * 120.00395 * 2 1 3 5 5 C 1.35486 * 117.00463 * 90.00175 * 4 2 1 6 6 C 1.39628 * 119.97779 * 179.72406 * 5 4 2 7 7 N 1.31538 * 120.03718 * 179.70350 * 6 5 4 8 8 C 1.33217 * 119.98752 * 0.56882 * 7 6 5 9 9 C 1.47898 * 120.02503 * 179.72540 * 8 7 6 10 10 O 1.21551 * 120.00064 * 179.97438 * 9 8 7 11 11 N 1.34783 * 120.00041 * 359.97438 * 9 8 7 12 12 C 1.46494 * 120.00019 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47082 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.64028 * 305.70418 * 13 12 11 15 15 C 1.55157 * 110.72195 * 182.56347 * 13 12 11 16 16 C 1.54909 * 101.58044 * 206.13370 * 15 13 12 17 17 N 1.47423 * 104.83567 * 37.00834 * 16 15 13 18 18 C 1.36936 * 125.65014 * 155.90164 * 17 16 15 19 19 H 1.08005 * 119.99945 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99983 * 359.97438 * 18 17 16 21 21 N 1.31615 * 120.00271 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99825 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47556 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47257 * 119.99825 * 22 20 18 25 25 H 1.48505 * 109.47206 * 239.99898 * 22 20 18 26 26 C 1.47321 * 108.73331 * 335.71407 * 17 16 15 27 27 C 1.39395 * 119.95061 * 359.70417 * 8 7 6 28 28 N 1.32079 * 119.95992 * 0.02562 * 27 8 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 33 33 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 34 34 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 36 36 H 1.07993 * 119.98373 * 359.97438 * 6 5 4 37 37 H 0.97006 * 119.99555 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47438 * 300.00170 * 12 11 9 39 39 H 1.09006 * 109.47144 * 60.00191 * 12 11 9 40 40 H 1.08999 * 111.00360 * 324.20666 * 15 13 12 41 41 H 1.08999 * 111.00645 * 88.01812 * 15 13 12 42 42 H 1.09008 * 110.36758 * 155.84348 * 16 15 13 43 43 H 1.08998 * 110.36755 * 278.05495 * 16 15 13 44 44 H 0.96993 * 120.00101 * 180.02562 * 21 20 18 45 45 H 1.09000 * 110.06540 * 241.86902 * 26 17 16 46 46 H 1.08999 * 109.84730 * 120.61074 * 26 17 16 47 47 H 1.07997 * 120.01501 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2114 -2.0091 1.0653 6 6 2.6817 -2.7283 2.1659 7 7 2.8757 -4.0258 2.0705 8 6 2.6342 -4.6523 0.9200 9 6 2.8578 -6.1101 0.8100 10 8 2.6368 -6.6814 -0.2398 11 7 3.3066 -6.8052 1.8740 12 6 3.5275 -8.2493 1.7653 13 6 4.0328 -8.7902 3.1043 14 1 4.9150 -8.2405 3.4325 15 6 4.3380 -10.3081 3.0034 16 6 4.1505 -10.7614 4.4727 17 7 3.0189 -9.9601 4.9735 18 6 2.1967 -10.3029 6.0135 19 1 1.3920 -9.6443 6.3054 20 6 2.3973 -11.4968 6.6925 21 7 3.3776 -12.2997 6.3365 22 14 1.2761 -11.9640 8.1115 23 1 0.2604 -10.8993 8.3113 24 1 0.5948 -13.2469 7.8025 25 1 2.0819 -12.1172 9.3495 26 6 2.9214 -8.7271 4.1732 27 6 2.1701 -3.9329 -0.1801 28 7 1.9709 -2.6310 -0.0806 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 2.8821 -2.2197 3.0973 37 1 3.4832 -6.3492 2.7118 38 1 2.5905 -8.7418 1.5053 39 1 4.2686 -8.4462 0.9905 40 1 3.6253 -10.8070 2.3466 41 1 5.3610 -10.4796 2.6684 42 1 3.9107 -11.8239 4.5143 43 1 5.0504 -10.5535 5.0516 44 1 3.5176 -13.1341 6.8107 45 1 3.0689 -7.8550 4.8103 46 1 1.9455 -8.6754 3.6905 47 1 1.9744 -4.4397 -1.1135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028539127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:44 Heat of formation + Delta-G solvation = -25.889945 kcal Electronic energy + Delta-G solvation = -27836.451966 eV Core-core repulsion = 23826.594221 eV Total energy + Delta-G solvation = -4009.857744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.61098 -40.84090 -39.76755 -39.12939 -36.18870 -35.41770 -34.41483 -34.25784 -32.12495 -31.41753 -29.83250 -28.21521 -27.45606 -26.46150 -25.97637 -24.76231 -22.75054 -22.24311 -21.60966 -21.19934 -19.74940 -19.35574 -18.89264 -18.67120 -17.29152 -17.09564 -16.87860 -16.62827 -16.21785 -16.04091 -15.93307 -15.61670 -15.42276 -15.08388 -14.69056 -14.32001 -14.26754 -14.13266 -13.54219 -13.45474 -13.36938 -13.26868 -13.14345 -13.03298 -12.95192 -12.79589 -12.69661 -12.48489 -11.97987 -11.94408 -11.90857 -11.82426 -11.77934 -11.59233 -11.49033 -11.28229 -10.74288 -10.43671 -10.22893 -9.85529 -8.86951 -7.76794 -5.20657 -0.70689 -0.17081 1.46564 1.47329 1.56731 1.57695 1.62295 1.99894 2.49767 2.58945 2.79572 2.90358 3.25888 3.32542 3.62728 3.73838 3.82304 3.85893 3.94472 3.99185 4.00960 4.09029 4.20619 4.44606 4.46823 4.56356 4.67256 4.69329 4.71533 4.79439 4.80203 4.85288 4.92834 5.01625 5.06533 5.15200 5.19754 5.23963 5.30681 5.40945 5.48889 5.68311 5.84202 5.86852 5.88489 6.29310 6.33396 6.53320 7.03179 7.12483 7.79843 8.43404 9.25178 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.002010 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.547162 B =13930.145068 C =14878.956909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.290 6.290 5 C 0.301 3.699 6 C 0.050 3.950 7 N -0.385 5.385 8 C -0.035 4.035 9 C 0.579 3.421 10 O -0.564 6.564 11 N -0.699 5.699 12 C 0.142 3.858 13 C -0.095 4.095 14 H 0.095 0.905 15 C -0.121 4.121 16 C 0.151 3.849 17 N -0.628 5.628 18 C -0.237 4.237 19 H 0.078 0.922 20 C -0.069 4.069 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.268 1.268 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.137 3.863 27 C 0.161 3.839 28 N -0.507 5.507 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.212 0.788 37 H 0.416 0.584 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.072 0.928 43 H -0.010 1.010 44 H 0.247 0.753 45 H 0.026 0.974 46 H 0.021 0.979 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 27.353 -14.926 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.194 6.194 5 C 0.117 3.883 6 C -0.118 4.118 7 N -0.102 5.102 8 C -0.172 4.172 9 C 0.364 3.636 10 O -0.443 6.443 11 N -0.350 5.350 12 C 0.018 3.982 13 C -0.114 4.114 14 H 0.113 0.887 15 C -0.160 4.160 16 C 0.026 3.974 17 N -0.354 5.354 18 C -0.366 4.366 19 H 0.096 0.904 20 C -0.262 4.262 21 N -0.598 5.598 22 Si 0.808 3.192 23 H -0.193 1.193 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.012 3.988 27 C 0.002 3.998 28 N -0.237 5.237 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.229 0.771 37 H 0.253 0.747 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.008 0.992 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.039 0.961 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.866 26.958 -15.330 31.023 hybrid contribution -0.525 -0.462 1.214 1.401 sum -1.391 26.495 -14.115 30.053 Atomic orbital electron populations 1.22222 0.93865 1.02261 1.04086 1.22765 0.95262 0.93985 0.86588 1.21931 1.02063 0.91959 1.04398 1.86329 1.78637 1.14276 1.40140 1.21486 0.89367 0.86462 0.91034 1.23444 0.99907 0.88686 0.99752 1.68351 1.09163 1.09299 1.23430 1.21731 1.07289 0.95483 0.92711 1.17660 0.77076 0.85166 0.83678 1.90787 1.53603 1.70466 1.29439 1.45854 1.65161 1.09253 1.14693 1.21347 1.01107 0.78847 0.96869 1.22288 0.98365 0.97284 0.93457 0.88706 1.22844 1.01994 0.93824 0.97305 1.21741 0.87791 0.97905 0.89938 1.44905 1.34090 1.19902 1.36538 1.19480 1.07959 1.02632 1.06565 0.90387 1.25627 1.00404 0.97469 1.02659 1.70054 1.33594 1.12654 1.43509 0.84989 0.77986 0.77710 0.78519 1.19253 1.21831 1.21863 1.21553 0.96386 0.88801 0.92066 1.23634 0.88726 0.87863 0.99552 1.68245 1.20063 1.10662 1.24690 0.91341 0.88964 0.93686 0.89683 0.91034 0.91754 0.88376 0.77143 0.74673 0.92140 0.89742 0.91648 0.89046 0.91030 0.99207 0.94350 0.95603 0.96116 0.78835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.53 71.98 0.69 -1.06 16 2 C 0.07 0.81 3.11 30.60 0.10 0.90 16 3 C -0.15 -1.01 9.56 71.98 0.69 -0.32 16 4 O -0.29 -4.38 9.76 -87.86 -0.86 -5.24 16 5 C 0.30 5.26 7.47 84.92 0.63 5.90 16 6 C 0.05 0.84 11.18 85.07 0.95 1.79 16 7 N -0.39 -8.09 9.70 -183.93 -1.78 -9.88 16 8 C -0.03 -0.79 6.74 41.77 0.28 -0.51 16 9 C 0.58 15.67 7.80 86.80 0.68 16.35 16 10 O -0.56 -17.96 16.33 -3.88 -0.06 -18.02 16 11 N -0.70 -18.14 5.42 -465.91 -2.53 -20.66 16 12 C 0.14 3.93 5.00 86.38 0.43 4.36 16 13 C -0.09 -3.00 2.98 -9.61 -0.03 -3.03 16 14 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 15 C -0.12 -4.30 6.54 31.99 0.21 -4.09 16 16 C 0.15 7.42 5.89 86.86 0.51 7.93 16 17 N -0.63 -32.59 3.40 -691.22 -2.35 -34.94 16 18 C -0.24 -13.50 10.28 84.03 0.86 -12.64 16 19 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 20 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 21 N -0.95 -56.94 10.09 21.65 0.22 -56.72 16 22 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 C 0.14 5.55 6.67 86.67 0.58 6.13 16 27 C 0.16 3.26 10.76 84.93 0.91 4.17 16 28 N -0.51 -9.66 8.80 -307.09 -2.70 -12.36 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 1.12 6.99 -2.39 -0.02 1.10 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.42 10.04 7.74 -92.70 -0.72 9.32 16 38 H 0.06 1.87 8.00 -2.39 -0.02 1.85 16 39 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.06 2.32 8.05 -2.39 -0.02 2.30 16 41 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.07 4.04 5.87 -2.38 -0.01 4.02 16 43 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 44 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 46 H 0.02 0.86 7.73 -2.39 -0.02 0.84 16 47 H 0.19 3.47 7.64 -2.91 -0.02 3.45 16 Total: -1.00 -70.66 389.16 0.18 -70.48 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.26 Total: 16.71 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 7.96 Total: 22.37 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -9.14 Total: -134.57 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.92 Total: -23.26 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -70.66 0.18 -70.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028539127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.587 kcal (2) G-P(sol) polarization free energy of solvation -70.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds