Wall clock time and date at job start Tue Mar 31 2020 18:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47217 * 2 1 4 4 O 1.42897 * 109.46859 * 120.00338 * 2 1 3 5 5 C 1.35487 * 116.99824 * 150.00270 * 4 2 1 6 6 C 1.39633 * 119.97256 * 179.97438 * 5 4 2 7 7 N 1.31536 * 120.03636 * 179.71894 * 6 5 4 8 8 C 1.33212 * 119.98497 * 0.54874 * 7 6 5 9 9 C 1.47915 * 120.02177 * 179.74611 * 8 7 6 10 10 O 1.21545 * 119.99632 * 186.37762 * 9 8 7 11 11 N 1.34773 * 119.99800 * 6.37628 * 9 8 7 12 12 C 1.46505 * 120.00239 * 5.55944 * 11 9 8 13 13 C 1.46498 * 119.99908 * 185.55995 * 11 9 8 14 14 H 1.09000 * 110.91777 * 356.09805 * 13 11 9 15 15 C 1.55155 * 111.00470 * 119.99830 * 13 11 9 16 16 C 1.54327 * 103.10274 * 153.66610 * 15 13 11 17 17 N 1.47029 * 107.26997 * 337.71793 * 16 15 13 18 18 C 1.36935 * 125.64585 * 178.90173 * 17 16 15 19 19 H 1.08004 * 119.99225 * 174.92606 * 18 17 16 20 20 C 1.38802 * 120.00328 * 354.93135 * 18 17 16 21 21 N 1.31621 * 120.00070 * 6.39696 * 20 18 17 22 22 Si 1.86801 * 120.00077 * 186.39552 * 20 18 17 23 23 H 1.48498 * 109.47370 * 94.99017 * 22 20 18 24 24 H 1.48501 * 109.47451 * 214.99117 * 22 20 18 25 25 H 1.48498 * 109.46961 * 334.99061 * 22 20 18 26 26 C 1.47426 * 108.70247 * 358.94171 * 17 16 15 27 27 C 1.39384 * 119.95585 * 359.46797 * 8 7 6 28 28 N 1.32083 * 119.96370 * 0.25444 * 27 8 7 29 29 H 1.08994 * 109.47094 * 300.00566 * 1 2 3 30 30 H 1.09003 * 109.46900 * 60.00255 * 1 2 3 31 31 H 1.08997 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46634 * 239.99777 * 2 1 3 33 33 H 1.09001 * 109.46907 * 59.99858 * 3 2 1 34 34 H 1.08994 * 109.46683 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46977 * 299.99698 * 3 2 1 36 36 H 1.07993 * 119.98430 * 359.96792 * 6 5 4 37 37 H 1.09000 * 109.46602 * 276.03317 * 12 11 9 38 38 H 1.09003 * 109.46992 * 36.02817 * 12 11 9 39 39 H 1.08996 * 109.47179 * 156.03687 * 12 11 9 40 40 H 1.09002 * 110.71987 * 35.21482 * 15 13 11 41 41 H 1.08997 * 110.72542 * 272.11718 * 15 13 11 42 42 H 1.08998 * 109.88312 * 97.13718 * 16 15 13 43 43 H 1.08999 * 109.88193 * 218.15243 * 16 15 13 44 44 H 0.97001 * 119.99813 * 180.02562 * 21 20 18 45 45 H 1.08997 * 110.36612 * 142.96451 * 26 17 16 46 46 H 1.08996 * 110.36780 * 265.29067 * 26 17 16 47 47 H 1.08005 * 120.02278 * 180.27257 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1970 -1.3121 1.0653 6 6 3.7212 -1.9900 2.1678 7 7 4.8745 -2.6149 2.0692 8 6 5.5480 -2.5918 0.9201 9 6 6.8476 -3.2895 0.8100 10 8 7.5164 -3.1728 -0.1982 11 7 7.2901 -4.0545 1.8275 12 6 6.4323 -4.2940 2.9908 13 6 8.6289 -4.6466 1.7703 14 1 9.1092 -4.4314 0.8158 15 6 9.5037 -4.1591 2.9554 16 6 10.5162 -5.3091 3.1391 17 7 9.9174 -6.5161 2.5506 18 6 10.5066 -7.7507 2.4894 19 1 9.9514 -8.5957 2.1095 20 6 11.8171 -7.9163 2.9158 21 7 12.4518 -6.9190 3.4946 22 14 12.6800 -9.5545 2.6682 23 1 13.4682 -9.5137 1.4104 24 1 13.5889 -9.8134 3.8137 25 1 11.6688 -10.6387 2.5838 26 6 8.5781 -6.1767 2.0363 27 6 5.0245 -1.9147 -0.1800 28 7 3.8637 -1.2925 -0.0805 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 3.1776 -2.0047 3.1008 37 1 6.5284 -3.4634 3.6901 38 1 5.3951 -4.3776 2.6663 39 1 6.7353 -5.2189 3.4814 40 1 8.8993 -4.0303 3.8534 41 1 10.0159 -3.2313 2.7007 42 1 11.4472 -5.0690 2.6256 43 1 10.7086 -5.4677 4.2002 44 1 13.3678 -7.0346 3.7922 45 1 8.3796 -6.7159 1.1101 46 1 7.8163 -6.4069 2.7810 47 1 5.5676 -1.8991 -1.1135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033079073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:52 Heat of formation + Delta-G solvation = 25.936749 kcal Electronic energy + Delta-G solvation = -28610.852550 eV Core-core repulsion = 24603.242180 eV Total energy + Delta-G solvation = -4007.610370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.81493 -39.95190 -38.89550 -37.28464 -35.20052 -34.24021 -33.82411 -32.12770 -30.95656 -29.19353 -27.78955 -27.49073 -26.77413 -25.50116 -25.04937 -24.11596 -22.03957 -21.17763 -20.10315 -19.20191 -19.02747 -18.27528 -17.23698 -16.86106 -16.47247 -16.34759 -15.41965 -15.35186 -15.19478 -14.79386 -14.60827 -14.20418 -14.05613 -13.86180 -13.46095 -13.05180 -12.92586 -12.86693 -12.81975 -12.67587 -12.53575 -12.32620 -12.11815 -11.79523 -11.69906 -11.52737 -11.21904 -11.03095 -10.92930 -10.83649 -10.72482 -10.40388 -10.15914 -10.05682 -9.78181 -9.71923 -9.35074 -9.12215 -8.58587 -8.32090 -6.82765 -5.71733 -3.04853 0.19420 0.65009 2.33878 2.62651 3.00525 3.41966 3.47119 3.48897 3.49710 3.59842 3.76789 4.06549 4.34688 4.44179 4.51051 4.54989 4.71819 4.80986 5.05516 5.10031 5.20003 5.24395 5.30778 5.36500 5.43526 5.45428 5.55903 5.61982 5.66624 5.69958 5.75051 5.81849 5.88436 6.12677 6.26855 6.31671 6.50571 6.58287 6.60404 6.68759 6.72645 6.95226 7.25061 7.53429 7.56136 7.63687 7.83099 8.17534 8.25976 9.21568 9.81708 10.47168 11.40111 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.039145 B = 0.002039 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.116340 B =13731.352157 C =13789.530950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 C -0.170 4.170 4 O -0.290 6.290 5 C 0.295 3.705 6 C 0.037 3.963 7 N -0.367 5.367 8 C -0.013 4.013 9 C 0.574 3.426 10 O -0.537 6.537 11 N -0.578 5.578 12 C 0.085 3.915 13 C 0.120 3.880 14 H 0.108 0.892 15 C -0.151 4.151 16 C 0.179 3.821 17 N -0.602 5.602 18 C -0.229 4.229 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.131 3.869 27 C 0.158 3.842 28 N -0.503 5.503 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.183 0.817 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.253 0.747 45 H 0.042 0.958 46 H 0.025 0.975 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.068 15.883 -4.089 29.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.227 4.227 4 O -0.195 6.195 5 C 0.112 3.888 6 C -0.129 4.129 7 N -0.084 5.084 8 C -0.152 4.152 9 C 0.359 3.641 10 O -0.414 6.414 11 N -0.308 5.308 12 C -0.058 4.058 13 C 0.017 3.983 14 H 0.126 0.874 15 C -0.190 4.190 16 C 0.054 3.946 17 N -0.329 5.329 18 C -0.357 4.357 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.004 3.996 27 C -0.001 4.001 28 N -0.232 5.232 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.200 0.800 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.042 0.958 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -23.671 15.854 -4.351 28.820 hybrid contribution 0.451 -0.663 -0.152 0.816 sum -23.220 15.192 -4.503 28.111 Atomic orbital electron populations 1.21917 0.92354 1.03245 1.03271 1.22509 0.94863 0.92947 0.87602 1.22229 1.02220 0.95304 1.02957 1.86309 1.30606 1.63465 1.39112 1.21316 0.86669 0.89614 0.91220 1.23134 0.93987 0.97079 0.98696 1.68987 1.04487 1.11491 1.23471 1.22042 0.98102 1.03229 0.91793 1.17499 0.83749 0.79386 0.83468 1.90801 1.57080 1.63936 1.29564 1.47686 1.16608 1.47573 1.18922 1.22099 0.94369 1.01573 0.87766 1.22627 0.80348 0.94503 1.00850 0.87388 1.23230 0.98679 1.00161 0.96950 1.21160 0.92769 0.82413 0.98284 1.44373 1.13294 1.07237 1.68014 1.19050 0.94788 0.84995 1.36881 0.90340 1.24834 0.96789 0.97937 1.00760 1.69972 1.11861 1.30517 1.44317 0.86100 0.79526 0.82805 0.77344 1.21578 1.21769 1.20624 1.21860 0.89534 0.91291 0.96947 1.23529 0.89041 0.87939 0.99572 1.68196 1.09105 1.21539 1.24328 0.91408 0.90228 0.91643 0.89020 0.91731 0.91932 0.90749 0.80041 0.92261 0.89973 0.90819 0.92016 0.91950 0.93097 0.93825 0.93702 0.93925 0.95755 0.79676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.56 37.16 0.36 -0.36 16 2 C 0.08 0.53 3.11 -26.73 -0.08 0.44 16 3 C -0.17 -1.04 9.53 37.16 0.35 -0.68 16 4 O -0.29 -2.48 9.76 -18.15 -0.18 -2.65 16 5 C 0.30 2.85 7.47 -16.71 -0.12 2.73 16 6 C 0.04 0.34 11.18 -17.16 -0.19 0.15 16 7 N -0.37 -4.12 6.34 -9.48 -0.06 -4.18 16 8 C -0.01 -0.16 6.55 -82.88 -0.54 -0.71 16 9 C 0.57 9.09 7.64 -12.30 -0.09 8.99 16 10 O -0.54 -9.90 15.75 5.33 0.08 -9.81 16 11 N -0.58 -9.22 2.92 -172.27 -0.50 -9.73 16 12 C 0.08 1.11 8.01 59.85 0.48 1.59 16 13 C 0.12 2.27 3.48 -65.52 -0.23 2.04 16 14 H 0.11 2.24 7.02 -51.93 -0.36 1.88 16 15 C -0.15 -2.90 6.53 -24.90 -0.16 -3.07 16 16 C 0.18 4.36 5.38 -3.06 -0.02 4.35 16 17 N -0.60 -15.51 3.40 -169.77 -0.58 -16.09 16 18 C -0.23 -6.42 10.27 -15.06 -0.15 -6.58 16 19 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 20 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 21 N -0.92 -27.08 10.35 55.49 0.57 -26.51 16 22 Si 0.91 22.22 29.56 -169.99 -5.02 17.20 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.13 2.76 6.78 -2.27 -0.02 2.75 16 27 C 0.16 1.79 10.76 -17.02 -0.18 1.61 16 28 N -0.50 -5.28 8.80 -12.76 -0.11 -5.40 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.70 6.99 -51.93 -0.36 0.33 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.06 0.73 7.97 -51.93 -0.41 0.32 16 38 H 0.08 0.98 5.84 -51.93 -0.30 0.68 16 39 H 0.07 1.01 5.97 -51.93 -0.31 0.70 16 40 H 0.06 1.09 7.33 -51.93 -0.38 0.71 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.38 7.28 -51.93 -0.38 1.00 16 43 H 0.04 1.16 7.62 -51.93 -0.40 0.76 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.03 0.50 5.98 -51.93 -0.31 0.19 16 47 H 0.19 1.91 7.65 -52.48 -0.40 1.50 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -32.27 378.93 -7.76 -40.03 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.97 Total: -1.54 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -0.70 Total: 12.97 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.68 Total: -61.90 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.09 Total: -12.47 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.27 -7.76 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033079073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.964 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds