Wall clock time and date at job start Tue Mar 31 2020 18:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47217 * 2 1 4 4 O 1.42897 * 109.46859 * 120.00338 * 2 1 3 5 5 C 1.35487 * 116.99824 * 150.00270 * 4 2 1 6 6 C 1.39633 * 119.97256 * 179.97438 * 5 4 2 7 7 N 1.31536 * 120.03636 * 179.71894 * 6 5 4 8 8 C 1.33212 * 119.98497 * 0.54874 * 7 6 5 9 9 C 1.47915 * 120.02177 * 179.74611 * 8 7 6 10 10 O 1.21545 * 119.99632 * 186.37762 * 9 8 7 11 11 N 1.34773 * 119.99800 * 6.37628 * 9 8 7 12 12 C 1.46505 * 120.00239 * 5.55944 * 11 9 8 13 13 C 1.46498 * 119.99908 * 185.55995 * 11 9 8 14 14 H 1.09000 * 110.91777 * 356.09805 * 13 11 9 15 15 C 1.55155 * 111.00470 * 119.99830 * 13 11 9 16 16 C 1.54327 * 103.10274 * 153.66610 * 15 13 11 17 17 N 1.47029 * 107.26997 * 337.71793 * 16 15 13 18 18 C 1.36935 * 125.64585 * 178.90173 * 17 16 15 19 19 H 1.08004 * 119.99225 * 174.92606 * 18 17 16 20 20 C 1.38802 * 120.00328 * 354.93135 * 18 17 16 21 21 N 1.31621 * 120.00070 * 6.39696 * 20 18 17 22 22 Si 1.86801 * 120.00077 * 186.39552 * 20 18 17 23 23 H 1.48498 * 109.47370 * 94.99017 * 22 20 18 24 24 H 1.48501 * 109.47451 * 214.99117 * 22 20 18 25 25 H 1.48498 * 109.46961 * 334.99061 * 22 20 18 26 26 C 1.47426 * 108.70247 * 358.94171 * 17 16 15 27 27 C 1.39384 * 119.95585 * 359.46797 * 8 7 6 28 28 N 1.32083 * 119.96370 * 0.25444 * 27 8 7 29 29 H 1.08994 * 109.47094 * 300.00566 * 1 2 3 30 30 H 1.09003 * 109.46900 * 60.00255 * 1 2 3 31 31 H 1.08997 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46634 * 239.99777 * 2 1 3 33 33 H 1.09001 * 109.46907 * 59.99858 * 3 2 1 34 34 H 1.08994 * 109.46683 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46977 * 299.99698 * 3 2 1 36 36 H 1.07993 * 119.98430 * 359.96792 * 6 5 4 37 37 H 1.09000 * 109.46602 * 276.03317 * 12 11 9 38 38 H 1.09003 * 109.46992 * 36.02817 * 12 11 9 39 39 H 1.08996 * 109.47179 * 156.03687 * 12 11 9 40 40 H 1.09002 * 110.71987 * 35.21482 * 15 13 11 41 41 H 1.08997 * 110.72542 * 272.11718 * 15 13 11 42 42 H 1.08998 * 109.88312 * 97.13718 * 16 15 13 43 43 H 1.08999 * 109.88193 * 218.15243 * 16 15 13 44 44 H 0.97001 * 119.99813 * 180.02562 * 21 20 18 45 45 H 1.08997 * 110.36612 * 142.96451 * 26 17 16 46 46 H 1.08996 * 110.36780 * 265.29067 * 26 17 16 47 47 H 1.08005 * 120.02278 * 180.27257 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1970 -1.3121 1.0653 6 6 3.7212 -1.9900 2.1678 7 7 4.8745 -2.6149 2.0692 8 6 5.5480 -2.5918 0.9201 9 6 6.8476 -3.2895 0.8100 10 8 7.5164 -3.1728 -0.1982 11 7 7.2901 -4.0545 1.8275 12 6 6.4323 -4.2940 2.9908 13 6 8.6289 -4.6466 1.7703 14 1 9.1092 -4.4314 0.8158 15 6 9.5037 -4.1591 2.9554 16 6 10.5162 -5.3091 3.1391 17 7 9.9174 -6.5161 2.5506 18 6 10.5066 -7.7507 2.4894 19 1 9.9514 -8.5957 2.1095 20 6 11.8171 -7.9163 2.9158 21 7 12.4518 -6.9190 3.4946 22 14 12.6800 -9.5545 2.6682 23 1 13.4682 -9.5137 1.4104 24 1 13.5889 -9.8134 3.8137 25 1 11.6688 -10.6387 2.5838 26 6 8.5781 -6.1767 2.0363 27 6 5.0245 -1.9147 -0.1800 28 7 3.8637 -1.2925 -0.0805 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 3.1776 -2.0047 3.1008 37 1 6.5284 -3.4634 3.6901 38 1 5.3951 -4.3776 2.6663 39 1 6.7353 -5.2189 3.4814 40 1 8.8993 -4.0303 3.8534 41 1 10.0159 -3.2313 2.7007 42 1 11.4472 -5.0690 2.6256 43 1 10.7086 -5.4677 4.2002 44 1 13.3678 -7.0346 3.7922 45 1 8.3796 -6.7159 1.1101 46 1 7.8163 -6.4069 2.7810 47 1 5.5676 -1.8991 -1.1135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033079073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:51 Heat of formation + Delta-G solvation = 4.408401 kcal Electronic energy + Delta-G solvation = -28611.786090 eV Core-core repulsion = 24603.242180 eV Total energy + Delta-G solvation = -4008.543909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.66033 -41.07741 -39.80001 -38.87205 -36.50563 -35.32373 -34.40138 -33.97532 -31.92830 -31.02037 -29.15673 -28.19769 -27.94893 -26.73444 -26.18191 -25.50779 -22.84303 -22.28283 -22.03391 -20.57301 -19.72368 -19.21438 -18.92878 -18.23345 -17.64915 -17.23703 -16.72202 -16.44034 -16.15594 -16.04424 -15.86170 -15.56545 -15.19258 -14.82632 -14.53421 -14.36496 -14.19343 -14.01829 -13.87713 -13.71067 -13.53509 -13.39955 -13.23185 -12.98990 -12.91908 -12.75480 -12.56403 -12.28948 -12.22584 -12.11739 -12.00514 -11.86321 -11.81444 -11.71901 -11.50923 -11.40063 -10.70218 -10.28050 -9.97696 -9.62961 -8.90197 -7.86584 -5.22228 -0.68744 -0.14346 1.46377 1.49200 1.54494 1.57430 1.61338 1.82972 2.49945 2.56999 2.81509 2.85847 3.27714 3.32470 3.55920 3.67408 3.84710 3.89439 3.94597 3.96901 4.04360 4.19502 4.22264 4.31088 4.47212 4.54908 4.62371 4.67630 4.70468 4.77928 4.81102 4.86353 4.86890 4.95082 4.98841 5.08616 5.20581 5.23811 5.25491 5.43702 5.52665 5.61624 5.72768 5.89302 5.91398 6.17529 6.26616 6.47002 6.94847 7.08263 7.73991 8.38503 9.24072 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.039145 B = 0.002039 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.116340 B =13731.352157 C =13789.530950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.166 4.166 4 O -0.289 6.289 5 C 0.301 3.699 6 C 0.050 3.950 7 N -0.372 5.372 8 C -0.030 4.030 9 C 0.574 3.426 10 O -0.570 6.570 11 N -0.580 5.580 12 C 0.087 3.913 13 C 0.137 3.863 14 H 0.086 0.914 15 C -0.132 4.132 16 C 0.188 3.812 17 N -0.624 5.624 18 C -0.244 4.244 19 H 0.084 0.916 20 C -0.064 4.064 21 N -0.949 5.949 22 Si 0.980 3.020 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.266 1.266 26 C 0.131 3.869 27 C 0.161 3.839 28 N -0.508 5.508 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.217 0.783 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.014 0.986 43 H 0.015 0.985 44 H 0.248 0.752 45 H 0.037 0.963 46 H 0.044 0.956 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.040 16.622 -3.755 31.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.224 4.224 4 O -0.193 6.193 5 C 0.116 3.884 6 C -0.118 4.118 7 N -0.089 5.089 8 C -0.167 4.167 9 C 0.361 3.639 10 O -0.450 6.450 11 N -0.309 5.309 12 C -0.054 4.054 13 C 0.032 3.968 14 H 0.105 0.895 15 C -0.171 4.171 16 C 0.063 3.937 17 N -0.351 5.351 18 C -0.373 4.373 19 H 0.101 0.899 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.808 3.192 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.191 1.191 26 C 0.005 3.995 27 C 0.003 3.997 28 N -0.238 5.238 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.234 0.766 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -26.689 16.598 -4.029 31.687 hybrid contribution 1.175 -0.790 -0.266 1.441 sum -25.515 15.808 -4.295 30.320 Atomic orbital electron populations 1.21927 0.90498 1.03514 1.04385 1.22746 0.96261 0.92985 0.86619 1.22214 1.01019 0.95064 1.04076 1.86329 1.29824 1.63121 1.39997 1.21568 0.86765 0.88969 0.91086 1.23664 0.93025 0.95461 0.99642 1.68894 1.05210 1.12111 1.22721 1.21517 0.97375 1.04741 0.93092 1.17895 0.84530 0.78845 0.82620 1.90777 1.58405 1.65010 1.30822 1.47659 1.15644 1.47586 1.20060 1.22237 0.94560 1.01739 0.86868 1.22124 0.82076 0.93077 0.99497 0.89542 1.23029 0.97653 0.98347 0.98106 1.20886 0.93021 0.83992 0.95827 1.44641 1.14989 1.06976 1.68456 1.19437 0.95307 0.86225 1.36303 0.89866 1.25692 0.97582 1.01530 1.00950 1.70181 1.11735 1.32447 1.45347 0.85045 0.78308 0.79131 0.76750 1.21612 1.21948 1.19086 1.21968 0.87823 0.92798 0.96893 1.23518 0.89242 0.87619 0.99361 1.68240 1.08857 1.21682 1.25009 0.90905 0.88520 0.91800 0.89908 0.91190 0.93707 0.89116 0.76622 0.90945 0.88415 0.91377 0.89810 0.90807 0.96782 0.96683 0.94262 0.94446 0.93836 0.79460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.56 71.98 0.69 -0.30 16 2 C 0.07 0.80 3.11 30.60 0.10 0.89 16 3 C -0.17 -1.69 9.53 71.98 0.69 -1.01 16 4 O -0.29 -4.16 9.76 -87.87 -0.86 -5.02 16 5 C 0.30 5.08 7.47 84.92 0.63 5.71 16 6 C 0.05 0.75 11.18 85.07 0.95 1.70 16 7 N -0.37 -7.43 6.34 -183.92 -1.17 -8.59 16 8 C -0.03 -0.74 6.55 41.78 0.27 -0.46 16 9 C 0.57 17.89 7.64 86.81 0.66 18.55 16 10 O -0.57 -21.34 15.75 -3.86 -0.06 -21.40 16 11 N -0.58 -17.92 2.92 -817.21 -2.38 -20.31 16 12 C 0.09 2.11 8.01 127.77 1.02 3.13 16 13 C 0.14 5.18 3.48 46.55 0.16 5.34 16 14 H 0.09 3.68 7.02 -2.39 -0.02 3.66 16 15 C -0.13 -5.06 6.53 31.78 0.21 -4.85 16 16 C 0.19 9.49 5.38 86.73 0.47 9.96 16 17 N -0.62 -32.77 3.40 -691.01 -2.35 -35.12 16 18 C -0.24 -13.90 10.27 84.03 0.86 -13.04 16 19 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 20 C -0.06 -3.71 5.48 84.86 0.47 -3.25 16 21 N -0.95 -57.68 10.35 21.65 0.22 -57.46 16 22 Si 0.98 46.33 29.56 68.60 2.03 48.36 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.13 5.54 6.78 87.02 0.59 6.13 16 27 C 0.16 3.49 10.76 84.93 0.91 4.41 16 28 N -0.51 -9.92 8.80 -307.08 -2.70 -12.62 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 1.12 6.99 -2.39 -0.02 1.10 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.22 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.07 1.58 7.97 -2.39 -0.02 1.56 16 38 H 0.10 2.08 5.84 -2.39 -0.01 2.07 16 39 H 0.07 1.72 5.97 -2.39 -0.01 1.71 16 40 H 0.08 2.84 7.33 -2.39 -0.02 2.83 16 41 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.01 0.80 7.28 -2.39 -0.02 0.78 16 43 H 0.01 0.83 7.62 -2.39 -0.02 0.81 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 46 H 0.04 1.71 5.98 -2.39 -0.01 1.69 16 47 H 0.19 3.85 7.65 -2.91 -0.02 3.83 16 Total: -1.00 -71.51 378.93 2.40 -69.11 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.98 Total: 10.14 kcal Atomic # 6 Polarization: 24.23 SS G_CDS: 8.68 Total: 32.91 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -8.37 Total: -134.10 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.92 Total: -26.43 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -71.51 2.40 -69.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033079073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.520 kcal (2) G-P(sol) polarization free energy of solvation -71.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds